UHGV-0122178

Genome information

Genome length 36,424 bps

CDS count 48

Completeness 99.90% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122178
vOTU ID	vOTU-030092
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324704
BioSample	SAMN00792044
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.79
Jumbo phage	No

Genome content
Genome length	36,424 bps
GC content	41.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.75%
Average CDS length	707.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122178_1	KOfam	K14059	int; integrase	NA
UHGV-0122178_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0122178_1	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0122178_1	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0122178_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122178_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0122178_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0122178_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0122178_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122178_2	UniRef90	UniRef90_A0A374NFM5	XRE family transcriptional regulator	NA
UHGV-0122178_2	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0122178_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0122178_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122178_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0122178_4	PHROG	phrog_10226	NA	unknown function
UHGV-0122178_4	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0122178_4	Structural annotation	COG4127	NA	NA
UHGV-0122178_5	PHROG	phrog_1914	NA	unknown function
UHGV-0122178_5	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0122178_5	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0122178_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0122178_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0122178_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0122178_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0122178_6	UniRef90	UniRef90_A0A374ND72	Transcriptional regulator	NA
UHGV-0122178_6	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0122178_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0122178_6	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0122178_7	UniRef90	UniRef90_A0A374N1V0	NA	NA
UHGV-0122178_7	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-0122178_7	Pfam	PF05339	NA	DUF739
UHGV-0122178_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0122178_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0122178_8	PHROG	phrog_3773	NA	unknown function
UHGV-0122178_8	Structural annotation	PF01423, MF_00257, NF041667	NA	NA
UHGV-0122178_9	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0122178_9	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0122178_9	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-0122178_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122178_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0122178_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0122178_11	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0122178_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0122178_11	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0122178_11	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0122178_12	Structural annotation	COG1862	NA	NA
UHGV-0122178_14	PHROG	phrog_408	NA	unknown function
UHGV-0122178_15	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122178_15	UniRef90	UniRef90_A0A412L7W2	NA	NA
UHGV-0122178_15	eggNOG-mapper	1151292.QEW_2472	NA	NA
UHGV-0122178_15	Pfam	PF10926	NA	DUF2800
UHGV-0122178_15	COG	COG2887	RecB family exonuclease	NA
UHGV-0122178_15	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0122178_16	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122178_16	UniRef90	UniRef90_A0A412UNI7	NA	NA
UHGV-0122178_16	eggNOG-mapper	573061.Clocel_0760	NA	NA
UHGV-0122178_16	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0122178_16	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0122178_17	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0122178_17	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0122178_17	UniRef90	UniRef90_A0A412UNJ8	POLAc domain-containing protein	NA
UHGV-0122178_17	eggNOG-mapper	1296660.S5M5X4_9CAUD	DNA polymerase family A	NA
UHGV-0122178_17	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0122178_17	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0122178_18	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0122178_18	UniRef90	UniRef90_UPI001D06E26F	virulence-associated E family protein	NA
UHGV-0122178_18	eggNOG-mapper	536232.CLM_2670	virulence-associated E family protein	NA
UHGV-0122178_18	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0122178_18	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0122178_18	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0122178_19	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122178_19	UniRef90	UniRef90_A0A412UNG8	VRR-NUC domain-containing protein	NA
UHGV-0122178_19	eggNOG-mapper	97138.C820_00219	VRR-NUC domain-containing protein	NA
UHGV-0122178_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0122178_19	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0122178_20	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0122178_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0122178_20	UniRef90	UniRef90_A0A412L7W0	ATP-dependent helicase	NA
UHGV-0122178_20	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-0122178_20	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0122178_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0122178_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0122178_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0122178_20	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0122178_22	Structural annotation	PF19824, MF_01506	NA	NA
UHGV-0122178_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0122178_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122178_23	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0122178_23	eggNOG-mapper	1341157.RF007C_00125	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0122178_23	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0122178_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122178_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0122178_23	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0122178_24	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0122178_24	Structural annotation	PF15597	NA	NA
UHGV-0122178_25	PHROG	phrog_25754	NA	unknown function
UHGV-0122178_25	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0122178_25	Structural annotation	PF06372, NF041655	NA	NA
UHGV-0122178_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122178_27	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0122178_27	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0122178_27	Pfam	PF07374	NA	DUF1492
UHGV-0122178_27	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0122178_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122178_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0122178_28	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-0122178_28	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0122178_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0122178_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0122178_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0122178_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122178_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0122178_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0122178_29	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0122178_29	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0122178_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0122178_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0122178_30	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0122178_30	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0122178_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0122178_30	COG	COG2369	NA	NA
UHGV-0122178_30	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0122178_32	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0122178_32	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0122178_32	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0122178_33	PHROG	phrog_2616	NA	unknown function
UHGV-0122178_33	Structural annotation	PF01281	NA	NA
UHGV-0122178_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0122178_34	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0122178_34	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0122178_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0122178_34	Structural annotation	PF06810	NA	NA
UHGV-0122178_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0122178_35	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0122178_35	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0122178_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0122178_36	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0122178_36	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0122178_37	PHROG	phrog_3366	NA	unknown function
UHGV-0122178_37	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0122178_37	Pfam	PF20536	NA	DUF6751
UHGV-0122178_37	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0122178_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0122178_38	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0122178_38	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0122178_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0122178_38	Structural annotation	PF11114	NA	NA
UHGV-0122178_39	PHROG	phrog_3266	tail completion	connector
UHGV-0122178_39	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0122178_39	Structural annotation	PF20765	NA	NA
UHGV-0122178_40	PHROG	phrog_3099	NA	unknown function
UHGV-0122178_40	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0122178_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0122178_41	PHROG	phrog_11299	NA	unknown function
UHGV-0122178_41	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0122178_41	Structural annotation	PF10666	NA	NA
UHGV-0122178_42	PHROG	phrog_706	NA	unknown function
UHGV-0122178_42	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0122178_42	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0122178_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0122178_42	Structural annotation	PF06854	NA	NA
UHGV-0122178_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0122178_44	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0122178_44	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0122178_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0122178_44	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0122178_45	PHROG	phrog_1194	NA	unknown function
UHGV-0122178_45	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0122178_45	Pfam	PF20458	NA	DUF6711
UHGV-0122178_45	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0122178_46	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0122178_47	PHROG	phrog_5302	tail protein	tail
UHGV-0122178_47	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-0122178_47	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0122178_47	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0122178_48	PHROG	phrog_5302	tail protein	tail
UHGV-0122178_48	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0122178_48	COG	COG5301	Phage-related tail fiber protein	NA