UHGV-0122181

Genome information

Genome length 36,794 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122181
vOTU ID	vOTU-068775
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324709
BioSample	SAMN00792044
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.3
Jumbo phage	No

Genome content
Genome length	36,794 bps
GC content	34.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.23%
Average CDS length	636.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122181_2	KOfam	K14059	int; integrase	NA
UHGV-0122181_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0122181_2	UniRef90	UniRef90_A0A3D0HM31	Site-specific integrase	NA
UHGV-0122181_2	eggNOG-mapper	1235793.C809_01886	Phage integrase family	NA
UHGV-0122181_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122181_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0122181_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0122181_3	PHROG	phrog_27136	NA	unknown function
UHGV-0122181_3	UniRef90	UniRef90_UPI001CED3949	zinc ribbon domain-containing protein	NA
UHGV-0122181_3	eggNOG-mapper	1282664.H354_06486	Short C-terminal domain	NA
UHGV-0122181_4	PHROG	phrog_87	metallo-protease	other
UHGV-0122181_4	UniRef90	UniRef90_UPI001C0108EA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0122181_4	eggNOG-mapper	1304866.K413DRAFT_0835	Zn peptidase	NA
UHGV-0122181_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0122181_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0122181_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0122181_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0122181_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122181_5	UniRef90	UniRef90_R5ZAU1	Conserved domain protein	NA
UHGV-0122181_5	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0122181_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122181_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0122181_5	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0122181_6	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0122181_6	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0122181_6	Pfam	PF05339	NA	DUF739
UHGV-0122181_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0122181_7	eggNOG-mapper	411461.DORFOR_00023	NA	NA
UHGV-0122181_9	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0122181_9	UniRef90	UniRef90_A0A413RZW5	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0122181_9	Pfam	PF05534	HicB family	HicB
UHGV-0122181_9	NCBIFam	NF041551.1	YlcI/YnfO family protein	NA
UHGV-0122181_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122181_12	UniRef90	UniRef90_K1SBE3	Phage-type endonuclease family protein (Fragment)	NA
UHGV-0122181_12	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0122181_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0122181_12	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0122181_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0122181_12	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0122181_13	PHROG	phrog_674	NA	unknown function
UHGV-0122181_13	UniRef90	UniRef90_A0A413RZX0	NA	NA
UHGV-0122181_13	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0122181_13	Pfam	PF07083	NA	DUF1351
UHGV-0122181_13	Structural annotation	PF07083	NA	NA
UHGV-0122181_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0122181_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122181_14	UniRef90	UniRef90_A0A413RCV3	Recombinase	NA
UHGV-0122181_14	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0122181_14	Pfam	PF03837	RecT family	RecT
UHGV-0122181_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0122181_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0122181_15	PHROG	phrog_2113	NA	unknown function
UHGV-0122181_15	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0122181_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0122181_16	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122181_16	UniRef90	UniRef90_A0A373VSB3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0122181_16	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0122181_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0122181_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0122181_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0122181_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122181_17	UniRef90	UniRef90_A0A1Y4B2C4	NA	NA
UHGV-0122181_17	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-0122181_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0122181_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0122181_17	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0122181_20	PHROG	phrog_17690	NA	unknown function
UHGV-0122181_20	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0122181_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0122181_21	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0122181_21	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0122181_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0122181_21	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0122181_22	PHROG	phrog_21026	NA	unknown function
UHGV-0122181_22	Structural annotation	NF037951	NA	NA
UHGV-0122181_25	PHROG	phrog_20593	NA	unknown function
UHGV-0122181_26	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0122181_26	UniRef90	UniRef90_A0A413RZZ9	Class I SAM-dependent methyltransferase	NA
UHGV-0122181_26	eggNOG-mapper	469604.HMPREF0946_01120	methyltransferase	NA
UHGV-0122181_26	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0122181_26	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0122181_26	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0122181_26	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0122181_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122181_29	UniRef90	UniRef90_A0A7C6D6F2	Sigma70_r4 domain-containing protein	NA
UHGV-0122181_29	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-0122181_29	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0122181_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0122181_30	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0122181_30	UniRef90	UniRef90_A0A416VUY5	Phage portal protein	NA
UHGV-0122181_30	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0122181_30	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0122181_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0122181_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122181_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122181_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0122181_31	UniRef90	UniRef90_A0A416VUT0	PBSX family phage terminase large subunit	NA
UHGV-0122181_31	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0122181_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0122181_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0122181_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122181_31	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0122181_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0122181_32	UniRef90	UniRef90_A0A416VUR7	Phage portal protein	NA
UHGV-0122181_32	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-0122181_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0122181_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0122181_33	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-0122181_33	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0122181_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0122181_33	COG	COG2369	NA	NA
UHGV-0122181_33	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0122181_35	PHROG	phrog_3675	NA	unknown function
UHGV-0122181_35	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0122181_35	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0122181_35	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0122181_35	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0122181_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0122181_36	UniRef90	UniRef90_C0CSR8	Phage minor structural protein GP20	NA
UHGV-0122181_36	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0122181_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0122181_36	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0122181_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0122181_37	UniRef90	UniRef90_A0A416VUP1	Phage major capsid protein	NA
UHGV-0122181_37	eggNOG-mapper	1449050.JNLE01000003_gene3889	Phage capsid family	NA
UHGV-0122181_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0122181_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0122181_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0122181_37	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0122181_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0122181_38	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0122181_39	PHROG	phrog_3366	NA	unknown function
UHGV-0122181_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0122181_40	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0122181_40	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0122181_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0122181_40	Structural annotation	PF11114	NA	NA
UHGV-0122181_41	PHROG	phrog_3266	tail completion	connector
UHGV-0122181_41	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0122181_41	Structural annotation	PF20765	NA	NA
UHGV-0122181_42	PHROG	phrog_3099	NA	unknown function
UHGV-0122181_42	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0122181_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0122181_43	PHROG	phrog_11299	NA	unknown function
UHGV-0122181_43	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0122181_43	Structural annotation	PF10666	NA	NA
UHGV-0122181_44	PHROG	phrog_706	NA	unknown function
UHGV-0122181_44	UniRef90	UniRef90_UPI0011DC8B0C	Gp15 family bacteriophage protein	NA
UHGV-0122181_44	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0122181_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0122181_44	Structural annotation	PF06854	NA	NA
UHGV-0122181_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0122181_45	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0122181_45	COG	COG5412	Phage-related protein	NA
UHGV-0122181_45	Structural annotation	PF11172	NA	NA
UHGV-0122181_46	PHROG	phrog_1194	NA	unknown function
UHGV-0122181_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0122181_47	PHROG	phrog_6616	tail protein	tail
UHGV-0122181_48	PHROG	phrog_3971	NA	unknown function
UHGV-0122181_48	eggNOG-mapper	1121866.AUGK01000003_gene1445	NA	NA
UHGV-0122181_50	PHROG	phrog_199	holin	lysis
UHGV-0122181_50	UniRef90	UniRef90_UPI000E4FBD87	phage holin family protein	NA
UHGV-0122181_50	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0122181_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0122181_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0122181_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0122181_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0122181_51	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0122181_51	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0122181_51	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0122181_51	Structural annotation	PF14359	NA	NA
UHGV-0122181_52	UniRef90	UniRef90_A0A413S044	Peptidase_C39_2 domain-containing protein	NA
UHGV-0122181_52	eggNOG-mapper	398512.JQKC01000001_gene2264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0122181_52	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0122181_52	COG	COG4990	Predicted cysteine peptidase, C39 family	NA
UHGV-0122181_52	Structural annotation	PF03412, PF18342, NF033920, NF041850, COG3271, COG4991	NA	NA