UHGV-0122191

Genome information

Genome length 36,690 bps

CDS count 60

Completeness 88.37% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122191
vOTU ID	vOTU-072881
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_318700
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.92
Jumbo phage	No

Genome content
Genome length	36,690 bps
GC content	42.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.41%
Average CDS length	549.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122191_1	UniRef90	UniRef90_U2CXQ8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0122191_1	eggNOG-mapper	203119.Cthe_1750	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0122191_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0122191_1	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0122191_3	KOfam	K14059	int; integrase	NA
UHGV-0122191_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0122191_3	UniRef90	UniRef90_UPI00164A4E4A	site-specific integrase	NA
UHGV-0122191_3	eggNOG-mapper	1382358.JHVN01000005_gene3032	Phage integrase family	NA
UHGV-0122191_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0122191_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122191_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0122191_3	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0122191_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0122191_4	PHROG	phrog_435	endolysin	lysis
UHGV-0122191_4	UniRef90	UniRef90_F7KTY1	MurNAc-LAA domain-containing protein	NA
UHGV-0122191_4	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0122191_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0122191_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0122191_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0122191_4	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0122191_5	PHROG	phrog_443	holin	lysis
UHGV-0122191_5	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0122191_5	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0122191_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0122191_5	Structural annotation	PF16945	NA	NA
UHGV-0122191_7	Structural annotation	NF040910	NA	NA
UHGV-0122191_8	eggNOG-mapper	537007.BLAHAN_05250	NA	NA
UHGV-0122191_9	PHROG	phrog_21765	NA	unknown function
UHGV-0122191_9	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0122191_10	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0122191_10	PHROG	phrog_819	tail protein	tail
UHGV-0122191_10	UniRef90	UniRef90_A0A6N2UUB4	Collagen triple helix repeat (20 copies)	NA
UHGV-0122191_10	eggNOG-mapper	428127.EUBDOL_01210	self proteolysis	NA
UHGV-0122191_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0122191_10	COG	COG3209	NA	NA
UHGV-0122191_11	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0122191_11	Structural annotation	PF12733, COG2372	NA	NA
UHGV-0122191_12	PHROG	phrog_16164	NA	unknown function
UHGV-0122191_12	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0122191_12	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0122191_13	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-0122191_13	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0122191_13	COG	COG4675	Phage tail collar domain	NA
UHGV-0122191_13	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0122191_14	PHROG	phrog_11037	NA	unknown function
UHGV-0122191_14	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-0122191_14	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0122191_14	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0122191_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0122191_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0122191_14	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0122191_15	PHROG	phrog_13289	tail protein	tail
UHGV-0122191_15	UniRef90	UniRef90_A0A844KBR1	Prophage_tail domain-containing protein	NA
UHGV-0122191_15	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0122191_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0122191_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0122191_15	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0122191_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0122191_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0122191_16	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-0122191_16	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0122191_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0122191_16	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0122191_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0122191_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0122191_17	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0122191_17	PHROG	phrog_5218	NA	unknown function
UHGV-0122191_17	UniRef90	UniRef90_A0A174CPF9	Phage-related minor tail protein	NA
UHGV-0122191_17	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0122191_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0122191_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0122191_17	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0122191_19	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-0122191_19	Structural annotation	PF11836	NA	NA
UHGV-0122191_20	PHROG	phrog_88	major tail protein	tail
UHGV-0122191_20	UniRef90	UniRef90_A0A7G9G8N6	S-l_SbsC_C domain-containing protein	NA
UHGV-0122191_20	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0122191_20	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0122191_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0122191_20	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0122191_21	UniRef90	UniRef90_A0A7G9G8N8	Phage tail protein	NA
UHGV-0122191_21	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0122191_21	COG	COG5492	NA	NA
UHGV-0122191_21	Structural annotation	PF05657	NA	NA
UHGV-0122191_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0122191_22	UniRef90	UniRef90_A5ZPL5	Phage protein, HK97 gp10 family	NA
UHGV-0122191_22	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-0122191_22	Structural annotation	TIGR01725	NA	NA
UHGV-0122191_23	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0122191_23	UniRef90	UniRef90_A5ZPL6	Putative phage head-tail adaptor	NA
UHGV-0122191_23	eggNOG-mapper	97139.C824_05968	NA	NA
UHGV-0122191_23	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0122191_24	PHROG	phrog_5223	neck protein	connector
UHGV-0122191_24	eggNOG-mapper	1235792.C808_03062	NA	NA
UHGV-0122191_24	Structural annotation	TIGR01560	NA	NA
UHGV-0122191_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0122191_25	UniRef90	UniRef90_A0A7G9G8P2	Phage major capsid protein	NA
UHGV-0122191_25	eggNOG-mapper	411459.RUMOBE_00935	phage major capsid protein, HK97 family	NA
UHGV-0122191_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0122191_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0122191_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0122191_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0122191_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0122191_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0122191_26	UniRef90	UniRef90_A5ZPL9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0122191_26	eggNOG-mapper	411459.RUMOBE_00936	Belongs to the peptidase S14 family	NA
UHGV-0122191_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0122191_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0122191_26	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0122191_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0122191_27	UniRef90	UniRef90_A0A7G9G8P4	Phage portal protein	NA
UHGV-0122191_27	eggNOG-mapper	411459.RUMOBE_00937	NA	NA
UHGV-0122191_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0122191_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0122191_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0122191_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0122191_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0122191_28	UniRef90	UniRef90_A0A174CJU0	Phage terminase-like protein, large subunit	NA
UHGV-0122191_28	eggNOG-mapper	411459.RUMOBE_00938	NA	NA
UHGV-0122191_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0122191_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0122191_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0122191_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0122191_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0122191_29	UniRef90	UniRef90_A0A174CNJ8	Phage terminase, small subunit	NA
UHGV-0122191_29	eggNOG-mapper	1235792.C808_03067	Phage terminase, small subunit	NA
UHGV-0122191_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0122191_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0122191_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0122191_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0122191_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122191_30	UniRef90	UniRef90_A0A174CMA9	HNH domain-containing protein	NA
UHGV-0122191_30	eggNOG-mapper	411459.RUMOBE_00940	HNH endonuclease	NA
UHGV-0122191_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0122191_30	Structural annotation	PF05766	NA	NA
UHGV-0122191_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122191_31	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0122191_31	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-0122191_31	Structural annotation	PF02996	NA	NA
UHGV-0122191_32	PHROG	phrog_19011	NA	unknown function
UHGV-0122191_36	PHROG	phrog_29188	NA	unknown function
UHGV-0122191_40	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0122191_40	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0122191_40	UniRef90	UniRef90_UPI00148B1899	DNA adenine methylase	NA
UHGV-0122191_40	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0122191_40	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0122191_40	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0122191_40	COG	COG0338	DNA-adenine methylase	NA
UHGV-0122191_40	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0122191_41	PHROG	phrog_37410	NA	unknown function
UHGV-0122191_43	PHROG	phrog_1974	NA	unknown function
UHGV-0122191_43	UniRef90	UniRef90_A0A2Z4UAW3	Nucleoid-associated protein	NA
UHGV-0122191_43	eggNOG-mapper	537007.BLAHAN_05629	37-kD nucleoid-associated bacterial protein	NA
UHGV-0122191_43	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0122191_43	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0122191_43	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0122191_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0122191_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122191_45	UniRef90	UniRef90_A0A2Z4UEP8	Single-stranded DNA-binding protein	NA
UHGV-0122191_45	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-0122191_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0122191_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0122191_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0122191_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0122191_45	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0122191_46	PHROG	phrog_7566	NA	unknown function
UHGV-0122191_46	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0122191_47	eggNOG-mapper	1235800.C819_00510	NA	NA
UHGV-0122191_48	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0122191_48	UniRef90	UniRef90_A0A2Z4UCZ0	RNase H type-1 domain-containing protein	NA
UHGV-0122191_48	eggNOG-mapper	1123325.JHUV01000014_gene41	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0122191_48	Pfam	PF00075	RNase H	RNase_H
UHGV-0122191_48	COG	COG0328	Ribonuclease HI	NA
UHGV-0122191_48	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0122191_52	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122191_52	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0122191_52	Structural annotation	PF01446	NA	NA
UHGV-0122191_53	eggNOG-mapper	97139.C824_05931	NA	NA
UHGV-0122191_54	Structural annotation	COG1965	NA	NA
UHGV-0122191_59	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0122191_59	UniRef90	UniRef90_UPI00156DC4C4	helix-turn-helix domain-containing protein	NA
UHGV-0122191_59	eggNOG-mapper	574376.BAMA_16250	Helix-turn-helix XRE-family like proteins	NA
UHGV-0122191_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122191_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0122191_59	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0122191_60	eggNOG-mapper	742740.HMPREF9474_02604	sequence-specific DNA binding	NA
UHGV-0122191_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA