UHGV-0122214

Genome information

vOTU vOTU-071971

Genome length 39,039 bps

CDS count 63

Completeness 94.69% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122214
vOTU ID	vOTU-071971
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_314170
BioSample	SAMEA4384402
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.01
Jumbo phage	No

Genome content
Genome length	39,039 bps
GC content	43.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.96%
Average CDS length	579.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122214_1	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0122214_2	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0122214_2	UniRef90	UniRef90_UPI00156F0BDA	phage head-tail connector protein	NA
UHGV-0122214_2	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0122214_2	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0122214_2	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0122214_3	PHROG	phrog_2724	NA	unknown function
UHGV-0122214_3	UniRef90	UniRef90_UPI00156EAC25	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0122214_3	eggNOG-mapper	1121931.AUHG01000010_gene612	This protein binds to 23S rRNA in the presence of protein L20	NA
UHGV-0122214_3	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0122214_3	COG	COG0261	Ribosomal protein L21	NA
UHGV-0122214_3	Structural annotation	PF07498	NA	NA
UHGV-0122214_4	PHROG	phrog_422	major head protein	head and packaging
UHGV-0122214_4	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0122214_4	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0122214_4	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0122214_5	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0122214_5	UniRef90	UniRef90_UPI001571586D	NA	NA
UHGV-0122214_5	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0122214_5	Pfam	PF14265	NA	DUF4355
UHGV-0122214_5	Structural annotation	PF14265	NA	NA
UHGV-0122214_6	PHROG	phrog_13199	NA	unknown function
UHGV-0122214_6	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0122214_7	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0122214_7	UniRef90	UniRef90_A0A3R6TX12	NA	NA
UHGV-0122214_7	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0122214_7	Pfam	PF14359	NA	DUF4406
UHGV-0122214_7	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0122214_8	PHROG	phrog_918	NA	unknown function
UHGV-0122214_8	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0122214_8	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0122214_8	Pfam	PF19791	NA	DUF6275
UHGV-0122214_8	Structural annotation	PF19791	NA	NA
UHGV-0122214_9	PHROG	phrog_3675	NA	unknown function
UHGV-0122214_9	UniRef90	UniRef90_A0A1M7JY59	YjcQ protein	NA
UHGV-0122214_9	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-0122214_9	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0122214_9	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0122214_10	Structural annotation	PF11344	NA	NA
UHGV-0122214_11	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0122214_11	UniRef90	UniRef90_UPI00157127C3	minor capsid protein	NA
UHGV-0122214_11	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0122214_11	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0122214_11	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0122214_11	COG	COG2369	NA	NA
UHGV-0122214_11	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0122214_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-0122214_12	UniRef90	UniRef90_A0A2V2D7F4	Phage portal protein	NA
UHGV-0122214_12	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0122214_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0122214_12	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0122214_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0122214_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122214_13	PHROG	phrog_10250	NA	unknown function
UHGV-0122214_13	UniRef90	UniRef90_A0A2V2D9F3	PBSX family phage terminase large subunit	NA
UHGV-0122214_13	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0122214_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0122214_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0122214_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122214_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0122214_14	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0122214_14	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0122214_14	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0122214_14	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0122214_14	Structural annotation	PF16677	NA	NA
UHGV-0122214_18	PHROG	phrog_8680	NA	unknown function
UHGV-0122214_18	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0122214_18	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0122214_18	Pfam	PF14386	NA	DUF4417
UHGV-0122214_18	Structural annotation	PF14386	NA	NA
UHGV-0122214_19	PHROG	phrog_11237	NA	unknown function
UHGV-0122214_19	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0122214_20	PHROG	phrog_6568	NA	unknown function
UHGV-0122214_22	UniRef90	UniRef90_A0A412ELZ1	NA	NA
UHGV-0122214_22	Pfam	PF19789	NA	DUF6273
UHGV-0122214_22	Structural annotation	PF19789	NA	NA
UHGV-0122214_24	PHROG	phrog_15077	NA	unknown function
UHGV-0122214_24	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0122214_25	PHROG	phrog_8684	NA	unknown function
UHGV-0122214_25	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-0122214_25	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0122214_25	Pfam	PF09643	YopX protein	YopX
UHGV-0122214_25	Pfam	PF04448	NA	DUF551
UHGV-0122214_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0122214_27	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0122214_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0122214_27	UniRef90	UniRef90_UPI001C01D594	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0122214_27	eggNOG-mapper	742765.HMPREF9457_03403	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0122214_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0122214_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0122214_27	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0122214_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0122214_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122214_30	UniRef90	UniRef90_UPI00156F3625	single-stranded DNA-binding protein	NA
UHGV-0122214_30	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-0122214_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0122214_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0122214_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0122214_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0122214_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0122214_31	PHROG	phrog_29887	NA	unknown function
UHGV-0122214_31	UniRef90	UniRef90_UPI001379B79E	NA	NA
UHGV-0122214_32	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0122214_32	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-0122214_32	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0122214_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0122214_32	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0122214_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0122214_32	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0122214_33	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122214_33	UniRef90	UniRef90_UPI001C030B8A	NA	NA
UHGV-0122214_33	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0122214_33	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0122214_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0122214_33	Structural annotation	PF14297	NA	NA
UHGV-0122214_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0122214_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122214_34	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0122214_34	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0122214_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0122214_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0122214_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0122214_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0122214_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122214_35	UniRef90	UniRef90_UPI00156E3AA2	recombinase RecT	NA
UHGV-0122214_35	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0122214_35	Pfam	PF03837	RecT family	RecT
UHGV-0122214_35	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0122214_35	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0122214_35	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0122214_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122214_36	UniRef90	UniRef90_UPI0015715373	YqaJ viral recombinase family protein	NA
UHGV-0122214_36	eggNOG-mapper	411902.CLOBOL_00693	YqaJ-like viral recombinase domain	NA
UHGV-0122214_36	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0122214_36	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0122214_36	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0122214_36	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0122214_37	UniRef90	UniRef90_UPI00156FCC15	helix-turn-helix domain-containing protein	NA
UHGV-0122214_39	Structural annotation	PF19128	NA	NA
UHGV-0122214_40	PHROG	phrog_3777	NA	unknown function
UHGV-0122214_40	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0122214_40	Structural annotation	PF18441	NA	NA
UHGV-0122214_42	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0122214_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0122214_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122214_45	UniRef90	UniRef90_UPI00191710C2	helix-turn-helix transcriptional regulator	NA
UHGV-0122214_45	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0122214_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122214_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0122214_45	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0122214_47	UniRef90	UniRef90_A0A1C6J701	Helix-turn-helix	NA
UHGV-0122214_47	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0122214_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122214_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0122214_48	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0122214_48	UniRef90	UniRef90_UPI0015700369	restriction endonuclease	NA
UHGV-0122214_48	eggNOG-mapper	411459.RUMOBE_01428	Restriction endonuclease	NA
UHGV-0122214_48	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0122214_48	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0122214_48	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0122214_49	PHROG	phrog_5319	outer membrane protein	other
UHGV-0122214_49	UniRef90	UniRef90_UPI00156DD7EE	zinc ribbon domain-containing protein	NA
UHGV-0122214_49	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0122214_49	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0122214_50	KOfam	K14059	int; integrase	NA
UHGV-0122214_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0122214_50	UniRef90	UniRef90_UPI00191722F2	site-specific integrase	NA
UHGV-0122214_50	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0122214_50	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0122214_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122214_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0122214_50	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0122214_51	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0122214_51	PHROG	phrog_1794	amidase	lysis
UHGV-0122214_51	UniRef90	UniRef90_A0A1C6J4E5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0122214_51	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0122214_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0122214_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0122214_51	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0122214_52	PHROG	phrog_37799	NA	unknown function
UHGV-0122214_52	UniRef90	UniRef90_UPI00156F2401	phage holin family protein	NA
UHGV-0122214_52	eggNOG-mapper	1151292.QEW_0990	Bacteriophage holin family	NA
UHGV-0122214_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0122214_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0122214_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0122214_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0122214_54	PHROG	phrog_16164	NA	unknown function
UHGV-0122214_54	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0122214_54	Structural annotation	PF17813, NF032891	NA	NA
UHGV-0122214_55	PHROG	phrog_22212	NA	unknown function
UHGV-0122214_55	UniRef90	UniRef90_A0A4S2F369	Peptidase (Fragment)	NA
UHGV-0122214_55	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0122214_55	COG	COG4926	Phage-related protein	NA
UHGV-0122214_56	PHROG	phrog_1194	NA	unknown function
UHGV-0122214_56	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0122214_56	Pfam	PF20458	NA	DUF6711
UHGV-0122214_56	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0122214_57	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0122214_57	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0122214_57	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0122214_57	COG	COG5283	Phage-related tail protein	NA
UHGV-0122214_58	PHROG	phrog_2066	NA	unknown function
UHGV-0122214_58	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0122214_59	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0122214_59	UniRef90	UniRef90_UPI00156E7CD5	NA	NA
UHGV-0122214_59	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0122214_59	Pfam	PF19591	NA	DUF6096
UHGV-0122214_59	Structural annotation	PF19591	NA	NA
UHGV-0122214_60	PHROG	phrog_158	major tail protein	tail
UHGV-0122214_60	UniRef90	UniRef90_UPI00156F5797	phage tail protein	NA
UHGV-0122214_60	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0122214_60	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0122214_60	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0122214_61	PHROG	phrog_78	tail terminator	connector
UHGV-0122214_61	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-0122214_61	Structural annotation	PF05657	NA	NA
UHGV-0122214_62	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0122214_62	UniRef90	UniRef90_UPI001D01C150	HK97 gp10 family phage protein	NA
UHGV-0122214_62	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0122214_62	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0122214_62	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0122214_62	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA