UHGV-0122270

Genome information

Genome length 30,209 bps

CDS count 40

Completeness 88.71% (medium-quality)

geNomad score 0.9489

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122270
vOTU ID	vOTU-040132
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_314815
BioSample	SAMN01828407
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9489
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.68
Jumbo phage	No

Genome content
Genome length	30,209 bps
GC content	28.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.66%
Average CDS length	701.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122270_1	KOfam	K14059	int; integrase	NA
UHGV-0122270_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0122270_1	UniRef90	UniRef90_A0A7I0ADR4	Site-specific integrase	NA
UHGV-0122270_1	eggNOG-mapper	984892.SPSE_1462	Phage integrase family	NA
UHGV-0122270_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0122270_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0122270_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122270_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0122270_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0122270_2	PHROG	phrog_19329	NA	unknown function
UHGV-0122270_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0122270_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0122270_3	UniRef90	UniRef90_UPI0012448628	helix-turn-helix domain-containing protein	NA
UHGV-0122270_3	eggNOG-mapper	1159488.SEQMU2_01585	Helix-turn-helix XRE-family like proteins	NA
UHGV-0122270_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122270_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0122270_3	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0122270_4	UniRef90	UniRef90_A0A855TRR3	NA	NA
UHGV-0122270_4	eggNOG-mapper	1159488.SEQMU2_01590	NA	NA
UHGV-0122270_4	Pfam	PF05339	NA	DUF739
UHGV-0122270_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0122270_4	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0122270_5	PHROG	phrog_9848	NA	unknown function
UHGV-0122270_6	PHROG	phrog_369	NA	unknown function
UHGV-0122270_6	UniRef90	UniRef90_UPI0018884D3C	NA	NA
UHGV-0122270_6	Pfam	PF06900	NA	DUF1270
UHGV-0122270_6	Structural annotation	PF06900	NA	NA
UHGV-0122270_7	PHROG	phrog_2527	NA	unknown function
UHGV-0122270_7	UniRef90	UniRef90_A0A077UD95	NA	NA
UHGV-0122270_8	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0122270_8	UniRef90	UniRef90_UPI00026C13DB	host-nuclease inhibitor Gam family protein	NA
UHGV-0122270_8	eggNOG-mapper	130478.Q9B0G4_9CAUD	DNA protection	NA
UHGV-0122270_8	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0122270_8	Structural annotation	PF07352	NA	NA
UHGV-0122270_9	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122270_9	UniRef90	UniRef90_UPI001E38E6AC	ERF family protein	NA
UHGV-0122270_9	eggNOG-mapper	1405498.SSIM_07545	ERF superfamily	NA
UHGV-0122270_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-0122270_9	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0122270_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0122270_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122270_10	UniRef90	UniRef90_UPI00026C13D9	single-stranded DNA-binding protein	NA
UHGV-0122270_10	eggNOG-mapper	1168613.I1W659_9CAUD	Single-strand binding protein family	NA
UHGV-0122270_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0122270_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0122270_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0122270_10	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0122270_11	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0122270_11	UniRef90	UniRef90_UPI00026C128A	DnaD domain protein	NA
UHGV-0122270_11	eggNOG-mapper	1273712.R9QSV5_9CAUD	calcium ion binding	NA
UHGV-0122270_11	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0122270_11	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0122270_11	Structural annotation	PF09681, TIGR01446, NF033788, COG3935	NA	NA
UHGV-0122270_12	PHROG	phrog_31805	NA	unknown function
UHGV-0122270_13	PHROG	phrog_14652	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122270_13	UniRef90	UniRef90_UPI001371B3EF	MazG-like family protein	NA
UHGV-0122270_13	eggNOG-mapper	279808.SH1788	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0122270_13	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0122270_13	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0122270_13	Structural annotation	PF12643, MF_01019, NF001613, COG0140	NA	NA
UHGV-0122270_14	PHROG	phrog_17486	NA	unknown function
UHGV-0122270_15	KOfam	K24072	xpf; positive control factor	NA
UHGV-0122270_15	PHROG	phrog_1190	RNA polymerase sigma factor	transcription regulation
UHGV-0122270_15	UniRef90	UniRef90_UPI00138AC616	RNA polymerase subunit sigma-70	NA
UHGV-0122270_15	eggNOG-mapper	458233.MCCL_0918	Sigma-70, region 4	NA
UHGV-0122270_15	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0122270_15	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0122270_16	PHROG	phrog_22310	NA	unknown function
UHGV-0122270_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0122270_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122270_17	UniRef90	UniRef90_A0A509LXQ2	HNH endonuclease	NA
UHGV-0122270_17	eggNOG-mapper	215167.Q4ZCM6_9CAUD	HNH endonuclease	NA
UHGV-0122270_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0122270_18	PHROG	phrog_1066	NA	unknown function
UHGV-0122270_18	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0122270_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0122270_19	UniRef90	UniRef90_A0A509LUT8	Terminase large subunit	NA
UHGV-0122270_19	eggNOG-mapper	1235755.ANAM01000006_gene2372	COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0122270_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0122270_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0122270_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0122270_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0122270_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0122270_20	UniRef90	UniRef90_A0A509LWD3	Phage portal protein	NA
UHGV-0122270_20	eggNOG-mapper	1235755.ANAM01000006_gene2373	Phage portal protein	NA
UHGV-0122270_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0122270_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0122270_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0122270_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0122270_21	KOfam	K06904	NA	NA
UHGV-0122270_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0122270_21	UniRef90	UniRef90_UPI00137097EC	HK97 family phage prohead protease	NA
UHGV-0122270_21	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-0122270_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0122270_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0122270_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0122270_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0122270_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0122270_22	UniRef90	UniRef90_A0A509LUG2	Phage major capsid protein	NA
UHGV-0122270_22	eggNOG-mapper	1235755.ANAM01000006_gene2375	Phage capsid family	NA
UHGV-0122270_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0122270_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0122270_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0122270_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0122270_23	PHROG	phrog_6480	Arc-like repressor	transcription regulation
UHGV-0122270_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0122270_24	UniRef90	UniRef90_A0A509LVT6	Phage gp6-like head-tail connector protein	NA
UHGV-0122270_24	eggNOG-mapper	195103.CPF_1583	Phage gp6-like head-tail connector protein	NA
UHGV-0122270_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0122270_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0122270_25	PHROG	phrog_25	head closure Hc1	connector
UHGV-0122270_25	UniRef90	UniRef90_A0A509LY81	Head-tail adaptor protein	NA
UHGV-0122270_25	eggNOG-mapper	240302.BN982_00186	NA	NA
UHGV-0122270_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0122270_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0122270_25	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0122270_26	UniRef90	UniRef90_UPI0011B4FB37	HK97 gp10 family phage protein	NA
UHGV-0122270_26	eggNOG-mapper	1458856.A0A059T5F3_9CAUD	NA	NA
UHGV-0122270_26	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0122270_27	PHROG	phrog_78	tail terminator	connector
UHGV-0122270_27	UniRef90	UniRef90_A0A1B3XJG6	NA	NA
UHGV-0122270_27	eggNOG-mapper	215167.Q4ZCT3_9CAUD	NA	NA
UHGV-0122270_27	Structural annotation	PF05657	NA	NA
UHGV-0122270_28	PHROG	phrog_88	major tail protein	tail
UHGV-0122270_28	UniRef90	UniRef90_A0A509LUM9	Phage tail protein	NA
UHGV-0122270_28	eggNOG-mapper	1235755.ANAM01000006_gene2381	Phage tail tube protein	NA
UHGV-0122270_28	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0122270_28	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0122270_28	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0122270_29	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0122270_30	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0122270_30	PHROG	phrog_4070	tail length tape measure protein	tail
UHGV-0122270_30	UniRef90	UniRef90_A0A6A2CTE7	Lysostaphin	NA
UHGV-0122270_30	eggNOG-mapper	874267.G4KNQ9_9CAUD	peptidoglycan catabolic process	NA
UHGV-0122270_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0122270_30	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0122270_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0122270_30	Structural annotation	PF01551, NF040883, COG3953, COG0739	NA	NA
UHGV-0122270_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0122270_31	UniRef90	UniRef90_UPI0013693484	phage tail family protein	NA
UHGV-0122270_31	eggNOG-mapper	186152.Q8SDP2_9CAUD	Phage tail protein	NA
UHGV-0122270_31	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0122270_31	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0122270_32	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0122270_32	UniRef90	UniRef90_A0A239T448	FtbL	NA
UHGV-0122270_32	eggNOG-mapper	169963.lmo0123	Prophage endopeptidase tail	NA
UHGV-0122270_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0122270_32	COG	COG4926	Phage-related protein	NA
UHGV-0122270_32	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0122270_33	PHROG	phrog_6907	NA	unknown function
UHGV-0122270_34	PHROG	phrog_8437	NA	unknown function
UHGV-0122270_34	UniRef90	UniRef90_A0A499SJU2	Minor structural protein	NA
UHGV-0122270_34	eggNOG-mapper	55511.Q4ZE17_9CAUD	NA	NA
UHGV-0122270_35	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0122270_35	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0122270_35	UniRef90	UniRef90_A0A509LY99	SGNH/GDSL hydrolase family protein	NA
UHGV-0122270_35	eggNOG-mapper	55511.Q4ZE16_9CAUD	NA	NA
UHGV-0122270_35	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0122270_36	PHROG	phrog_6183	minor tail protein	tail
UHGV-0122270_36	UniRef90	UniRef90_A0A509M0X7	NA	NA
UHGV-0122270_36	eggNOG-mapper	55511.Q4ZE15_9CAUD	NA	NA
UHGV-0122270_36	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0122270_37	PHROG	phrog_199	holin	lysis
UHGV-0122270_37	UniRef90	UniRef90_A0A509LXS3	Holin	NA
UHGV-0122270_37	eggNOG-mapper	904314.SEVCU012_0532	Bacteriophage holin family	NA
UHGV-0122270_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0122270_37	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0122270_37	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0122270_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0122270_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0122270_38	PHROG	phrog_833	endolysin	lysis
UHGV-0122270_38	UniRef90	UniRef90_A0A0E1VBQ0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0122270_38	eggNOG-mapper	458233.MCCL_0980	Ami_2	NA
UHGV-0122270_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0122270_38	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0122270_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0122270_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0122270_40	UniRef90	UniRef90_A0A4Y9KGE7	Site-specific integrase	NA
UHGV-0122270_40	eggNOG-mapper	1197952.I6SMN0_9CAUD	Phage integrase family	NA
UHGV-0122270_40	Pfam	PF00589	Phage integrase family	Phage_integrase