UHGV-0122340

Genome information

Genome length 42,416 bps

CDS count 81

Completeness 100.00% (complete)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122340
vOTU ID	vOTU-006286
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_334308
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.36
Jumbo phage	No

Genome content
Genome length	42,416 bps
GC content	53.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	92.61%
Average CDS length	488.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122340_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0122340_1	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0122340_1	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0122340_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0122340_1	COG	COG2369	NA	NA
UHGV-0122340_1	Structural annotation	PF06152	NA	NA
UHGV-0122340_2	Structural annotation	PF18152	NA	NA
UHGV-0122340_3	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0122340_3	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0122340_3	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0122340_3	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0122340_3	Structural annotation	PF06810	NA	NA
UHGV-0122340_4	PHROG	phrog_212	major head protein	head and packaging
UHGV-0122340_4	UniRef90	UniRef90_A0A2V2FIN1	Phage capsid protein	NA
UHGV-0122340_4	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0122340_4	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0122340_5	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0122340_5	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0122340_6	PHROG	phrog_3366	NA	unknown function
UHGV-0122340_6	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0122340_6	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0122340_7	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0122340_7	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0122340_7	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0122340_7	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0122340_7	Structural annotation	PF11114	NA	NA
UHGV-0122340_8	PHROG	phrog_3266	tail completion	connector
UHGV-0122340_8	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0122340_8	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0122340_8	Structural annotation	PF12691	NA	NA
UHGV-0122340_9	PHROG	phrog_3099	NA	unknown function
UHGV-0122340_9	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0122340_9	Structural annotation	TIGR02126	NA	NA
UHGV-0122340_10	PHROG	phrog_11299	NA	unknown function
UHGV-0122340_10	eggNOG-mapper	1235797.C816_04185	NA	NA
UHGV-0122340_10	Structural annotation	PF10666	NA	NA
UHGV-0122340_11	PHROG	phrog_706	NA	unknown function
UHGV-0122340_11	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0122340_11	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0122340_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0122340_11	Structural annotation	PF06854	NA	NA
UHGV-0122340_12	PHROG	phrog_806	NA	unknown function
UHGV-0122340_12	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0122340_12	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0122340_12	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0122340_12	Pfam	PF11611	NA	DUF4352
UHGV-0122340_12	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0122340_13	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0122340_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0122340_13	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0122340_13	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0122340_13	COG	COG1511	NA	NA
UHGV-0122340_13	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0122340_14	PHROG	phrog_1194	NA	unknown function
UHGV-0122340_14	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0122340_14	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0122340_15	PHROG	phrog_13879	NA	unknown function
UHGV-0122340_15	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0122340_15	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0122340_17	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0122340_17	PHROG	phrog_11157	NA	unknown function
UHGV-0122340_17	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0122340_17	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0122340_17	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0122340_17	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0122340_17	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0122340_17	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0122340_18	PHROG	phrog_18725	NA	unknown function
UHGV-0122340_18	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0122340_18	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0122340_18	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0122340_20	PHROG	phrog_2295	NA	unknown function
UHGV-0122340_20	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0122340_20	Structural annotation	PF21722	NA	NA
UHGV-0122340_21	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0122340_21	Structural annotation	PF21722	NA	NA
UHGV-0122340_23	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0122340_23	Structural annotation	PF21722	NA	NA
UHGV-0122340_25	PHROG	phrog_2310	NA	unknown function
UHGV-0122340_25	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0122340_27	PHROG	phrog_4105	NA	unknown function
UHGV-0122340_27	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0122340_27	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0122340_28	PHROG	phrog_1129	holin	lysis
UHGV-0122340_28	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0122340_28	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0122340_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0122340_28	Structural annotation	PF06946	NA	NA
UHGV-0122340_29	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0122340_29	PHROG	phrog_435	endolysin	lysis
UHGV-0122340_29	UniRef90	UniRef90_UPI000A02B331	CHAP domain-containing protein	NA
UHGV-0122340_29	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0122340_29	Pfam	PF05257	CHAP domain	CHAP
UHGV-0122340_29	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0122340_29	Pfam	PF05036	SPOR domain	SPOR
UHGV-0122340_29	COG	COG3942	Surface antigen	NA
UHGV-0122340_29	Structural annotation	PF01520, PF01471, TIGR02883, COG0860	NA	NA
UHGV-0122340_30	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0122340_30	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0122340_32	PHROG	phrog_3754	NA	unknown function
UHGV-0122340_32	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0122340_33	PHROG	phrog_21718	NA	unknown function
UHGV-0122340_33	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0122340_34	PHROG	phrog_22984	NA	unknown function
UHGV-0122340_35	PHROG	phrog_16490	NA	unknown function
UHGV-0122340_35	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0122340_36	PHROG	phrog_20016	NA	unknown function
UHGV-0122340_36	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0122340_36	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0122340_36	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0122340_37	PHROG	phrog_28802	NA	unknown function
UHGV-0122340_37	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0122340_37	Structural annotation	PF12510	NA	NA
UHGV-0122340_38	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0122340_39	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0122340_39	PHROG	phrog_95	integrase	integration and excision
UHGV-0122340_39	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0122340_39	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0122340_39	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0122340_39	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0122340_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0122340_39	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0122340_40	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0122340_40	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0122340_44	UniRef90	UniRef90_A0A1V0QCF9	HTH cro/C1-type domain-containing protein	NA
UHGV-0122340_44	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0122340_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122340_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0122340_44	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0122340_45	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0122340_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122340_45	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0122340_47	PHROG	phrog_22529	NA	unknown function
UHGV-0122340_47	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0122340_47	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0122340_47	Pfam	PF06725	3D domain	3D
UHGV-0122340_47	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0122340_47	Structural annotation	COG3584	NA	NA
UHGV-0122340_49	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0122340_49	PHROG	phrog_4433	NA	unknown function
UHGV-0122340_49	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0122340_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0122340_49	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0122340_49	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0122340_50	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0122340_50	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0122340_50	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0122340_52	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0122340_52	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0122340_52	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0122340_52	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0122340_52	Structural annotation	PF05565	NA	NA
UHGV-0122340_53	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122340_53	UniRef90	UniRef90_UPI001C126E67	ERF family protein	NA
UHGV-0122340_53	eggNOG-mapper	559189.B6SBX8_9CAUD	ERF superfamily	NA
UHGV-0122340_53	Pfam	PF04404	ERF superfamily	ERF
UHGV-0122340_53	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0122340_54	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0122340_54	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0122340_54	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0122340_54	Structural annotation	PF05772	NA	NA
UHGV-0122340_56	PHROG	phrog_7566	NA	unknown function
UHGV-0122340_56	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0122340_56	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0122340_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0122340_57	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122340_57	UniRef90	UniRef90_R5CX84	Single-stranded DNA-binding protein	NA
UHGV-0122340_57	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0122340_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0122340_57	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0122340_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0122340_57	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0122340_57	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0122340_58	PHROG	phrog_15768	NA	unknown function
UHGV-0122340_58	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0122340_58	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0122340_58	Pfam	PF19808	NA	DUF6291
UHGV-0122340_58	Structural annotation	PF19808	NA	NA
UHGV-0122340_60	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122340_60	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0122340_60	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0122340_60	Pfam	PF06356	NA	DUF1064
UHGV-0122340_60	Structural annotation	PF06356	NA	NA
UHGV-0122340_61	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0122340_61	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0122340_61	UniRef90	UniRef90_A0A7X8MLD3	Methyltransferase	NA
UHGV-0122340_61	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0122340_61	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0122340_61	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0122340_61	COG	COG0863	DNA modification methylase	NA
UHGV-0122340_61	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0122340_63	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0122340_63	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0122340_63	UniRef90	UniRef90_A0A8D9PDD1	DNA (Cytosine 5) methyltransferase	NA
UHGV-0122340_63	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0122340_63	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0122340_63	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0122340_63	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0122340_68	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0122340_72	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0122340_73	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0122340_74	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0122340_74	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0122340_74	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0122340_74	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0122340_74	Structural annotation	PF16677	NA	NA
UHGV-0122340_75	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122340_75	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0122340_75	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0122340_75	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0122340_75	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0122340_75	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0122340_75	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0122340_75	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122340_75	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0122340_76	PHROG	phrog_533	portal protein	head and packaging
UHGV-0122340_76	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0122340_76	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0122340_76	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0122340_76	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0122340_78	PHROG	phrog_8680	NA	unknown function
UHGV-0122340_78	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0122340_78	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0122340_78	Pfam	PF14386	NA	DUF4417
UHGV-0122340_78	Structural annotation	PF14386	NA	NA