UHGV-0122385

Genome information

Genome length 22,871 bps

CDS count 36

Completeness 50.12% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122385
vOTU ID	vOTU-016949
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_316865
BioSample	SAMN01773507
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.94
Jumbo phage	No

Genome content
Genome length	22,871 bps
GC content	51.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	86.64%
Average CDS length	557.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122385_1	PHROG	phrog_493	head-tail adaptor Ad1	connector
UHGV-0122385_1	UniRef90	UniRef90_A0A5A9CNT3	Protein singed	NA
UHGV-0122385_1	eggNOG-mapper	1028307.EAE_21065	NA	NA
UHGV-0122385_2	PHROG	phrog_1514	NA	unknown function
UHGV-0122385_2	eggNOG-mapper	1028307.EAE_21070	NA	NA
UHGV-0122385_3	PHROG	phrog_283	major head protein	head and packaging
UHGV-0122385_3	UniRef90	UniRef90_UPI001D0E813B	P22 coat - protein 5 family protein	NA
UHGV-0122385_3	eggNOG-mapper	78398.KS43_19450	P22 coat protein - gene protein 5	NA
UHGV-0122385_3	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0122385_3	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0122385_4	PHROG	phrog_784	NA	unknown function
UHGV-0122385_4	eggNOG-mapper	1028307.EAE_21080	NA	NA
UHGV-0122385_4	Pfam	PF20356	NA	DUF6651
UHGV-0122385_4	Structural annotation	PF20356	NA	NA
UHGV-0122385_5	PHROG	phrog_241	head morphogenesis	head and packaging
UHGV-0122385_5	UniRef90	UniRef90_R4YHI9	Phage_Mu_F domain-containing protein	NA
UHGV-0122385_5	eggNOG-mapper	1028307.EAE_21085	Head morphogenesis protein	NA
UHGV-0122385_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0122385_5	COG	COG2369	NA	NA
UHGV-0122385_5	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0122385_6	PHROG	phrog_145	portal protein	head and packaging
UHGV-0122385_6	UniRef90	UniRef90_A6T8C5	NA	NA
UHGV-0122385_6	eggNOG-mapper	1028307.EAE_21090	NA	NA
UHGV-0122385_6	Pfam	PF13264	NA	DUF4055
UHGV-0122385_6	Structural annotation	PF05133, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0122385_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122385_7	PHROG	phrog_38319	NA	unknown function
UHGV-0122385_7	UniRef90	UniRef90_A6T8C4	Terminase_6C domain-containing protein	NA
UHGV-0122385_7	eggNOG-mapper	1028307.EAE_21095	Terminase-like family	NA
UHGV-0122385_7	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0122385_7	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0122385_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122385_7	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-0122385_8	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0122385_8	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0122385_8	UniRef90	UniRef90_A0A4S4YCF9	Terminase small subunit	NA
UHGV-0122385_8	eggNOG-mapper	1028307.EAE_21100	terminase small subunit	NA
UHGV-0122385_8	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0122385_8	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0122385_8	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0122385_10	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0122385_10	eggNOG-mapper	571.MC52_01455	NA	NA
UHGV-0122385_11	PHROG	phrog_1356	holin	lysis
UHGV-0122385_11	UniRef90	UniRef90_A0A0M2KDI3	Membrane protein	NA
UHGV-0122385_11	eggNOG-mapper	1484158.PSNIH1_09125	NA	NA
UHGV-0122385_12	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0122385_12	PHROG	phrog_12853	NA	unknown function
UHGV-0122385_12	UniRef90	UniRef90_A0A2A5MEF5	PG_binding_3 domain-containing protein	NA
UHGV-0122385_12	eggNOG-mapper	393305.YE1815	secretion activating protein	NA
UHGV-0122385_12	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0122385_12	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0122385_12	COG	COG3926	Lysozyme family protein	NA
UHGV-0122385_12	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0122385_13	PHROG	phrog_785	holin	lysis
UHGV-0122385_13	UniRef90	UniRef90_A0A330YPJ8	Drug/metabolite transporter (DMT) superfamily permease	NA
UHGV-0122385_13	eggNOG-mapper	155864.EDL933_1818	LydA holin phage, holin superfamily III	NA
UHGV-0122385_13	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0122385_13	Structural annotation	PF16083	NA	NA
UHGV-0122385_14	PHROG	phrog_5286	NA	unknown function
UHGV-0122385_14	eggNOG-mapper	630626.EBL_c20700	NA	NA
UHGV-0122385_14	NCBIFam	NF033230.2	hypothetical protein	NA
UHGV-0122385_14	Structural annotation	NF033230	NA	NA
UHGV-0122385_15	PHROG	phrog_3501	NA	unknown function
UHGV-0122385_15	eggNOG-mapper	90371.CY43_10680	NA	NA
UHGV-0122385_16	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0122385_16	UniRef90	UniRef90_A0A486UAY6	Putative antitermination protein	NA
UHGV-0122385_16	eggNOG-mapper	1197719.A464_2031	Antitermination protein	NA
UHGV-0122385_16	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0122385_16	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0122385_16	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0122385_16	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0122385_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122385_17	UniRef90	UniRef90_A0A1Q8Z2A1	Crossover junction endodeoxyribonuclease RuvA	NA
UHGV-0122385_17	eggNOG-mapper	399742.Ent638_2254	PFAM endodeoxyribonuclease RusA	NA
UHGV-0122385_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0122385_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0122385_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0122385_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0122385_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0122385_18	UniRef90	UniRef90_A0A377ZT04	DNA helicase	NA
UHGV-0122385_18	eggNOG-mapper	1399774.JDWH01000024_gene4226	DnaB-like helicase N terminal domain	NA
UHGV-0122385_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0122385_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0122385_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0122385_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0122385_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0122385_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0122385_19	UniRef90	UniRef90_A0A330RXU1	ATP binding protein, IstB family	NA
UHGV-0122385_19	eggNOG-mapper	1399774.JDWH01000024_gene4225	DNA replication protein	NA
UHGV-0122385_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0122385_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0122385_19	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0122385_20	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122385_20	UniRef90	UniRef90_A0A2A5MIV7	Helix-turn-helix domain-containing protein	NA
UHGV-0122385_20	eggNOG-mapper	90371.CY43_10715	Helix-turn-helix domain	NA
UHGV-0122385_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0122385_20	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0122385_20	Structural annotation	PF13730, MF_01909, TIGR01610, COG5529	NA	NA
UHGV-0122385_21	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0122385_21	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0122385_21	UniRef90	UniRef90_A0A2J4YV98	XRE family transcriptional regulator	NA
UHGV-0122385_21	eggNOG-mapper	155864.EDL933_1367	Peptidase S24-like	NA
UHGV-0122385_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122385_21	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0122385_21	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0122385_21	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0122385_22	PHROG	phrog_1478	NA	unknown function
UHGV-0122385_22	eggNOG-mapper	1115512.EH105704_08_00630	NA	NA
UHGV-0122385_23	PHROG	phrog_35952	NA	unknown function
UHGV-0122385_24	PHROG	phrog_27579	NA	unknown function
UHGV-0122385_26	PHROG	phrog_8959	NA	unknown function
UHGV-0122385_26	eggNOG-mapper	1005994.GTGU_01793	NA	NA
UHGV-0122385_27	PHROG	phrog_1737	NA	unknown function
UHGV-0122385_27	eggNOG-mapper	1453496.AT03_15370	NA	NA
UHGV-0122385_27	Structural annotation	PF17345	NA	NA
UHGV-0122385_28	PHROG	phrog_340	NA	unknown function
UHGV-0122385_29	PHROG	phrog_1525	NA	unknown function
UHGV-0122385_29	eggNOG-mapper	371042.NG99_17025	NA	NA
UHGV-0122385_30	PHROG	phrog_1886	NA	unknown function
UHGV-0122385_30	eggNOG-mapper	1005994.GTGU_01797	NA	NA
UHGV-0122385_31	PHROG	phrog_1130	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0122385_31	UniRef90	UniRef90_A0A3T7Z3M5	Glycosyltransferase family 4 protein	NA
UHGV-0122385_32	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-0122385_32	PHROG	phrog_200	lipoprotein	other
UHGV-0122385_32	UniRef90	UniRef90_A0A2U0LHW6	Gp20	NA
UHGV-0122385_32	eggNOG-mapper	103807.Q8W654_9CAUD	SPFH domain / Band 7 family	NA
UHGV-0122385_32	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0122385_32	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0122385_33	PHROG	phrog_1515	NA	unknown function
UHGV-0122385_33	UniRef90	UniRef90_A0A286S1S7	2-polyprenylphenol hydrolase	NA
UHGV-0122385_33	eggNOG-mapper	716541.ECL_02717	NA	NA
UHGV-0122385_33	Structural annotation	PF17345	NA	NA
UHGV-0122385_35	UniRef90	UniRef90_A0A2L0KFG4	AlpA family transcriptional regulator	NA
UHGV-0122385_35	eggNOG-mapper	1147157.K7PKW1_9CAUD	Prophage CP4-57 regulatory protein (AlpA)	NA
UHGV-0122385_35	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0122385_36	KOfam	K14059	int; integrase	NA
UHGV-0122385_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0122385_36	UniRef90	UniRef90_A0A482IEN3	Integrase	NA
UHGV-0122385_36	eggNOG-mapper	399742.Ent638_2626	Belongs to the 'phage' integrase family	NA
UHGV-0122385_36	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0122385_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122385_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0122385_36	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA