UHGV-0122438

Genome information

Genome length 52,329 bps

CDS count 93

Completeness 90.14% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122438
vOTU ID	vOTU-068305
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_313274
BioSample	SAMEA4370581
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.72
Jumbo phage	No

Genome content
Genome length	52,329 bps
GC content	35.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	88.35%
Average CDS length	499.23 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122438_1	eggNOG-mapper	411470.RUMGNA_00744	SNF2 family N-terminal domain	NA
UHGV-0122438_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0122438_6	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-0122438_6	eggNOG-mapper	861454.HMPREF9099_01735	NA	NA
UHGV-0122438_6	Pfam	PF07866	NA	DUF1653
UHGV-0122438_6	COG	COG4728	NA	NA
UHGV-0122438_6	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0122438_7	PHROG	phrog_8684	NA	unknown function
UHGV-0122438_7	UniRef90	UniRef90_A0A3D2KEV6	YopX domain-containing protein	NA
UHGV-0122438_7	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0122438_7	Pfam	PF09643	YopX protein	YopX
UHGV-0122438_7	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0122438_9	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0122438_9	UniRef90	UniRef90_A0A3D5WJX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0122438_9	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0122438_9	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0122438_9	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0122438_11	PHROG	phrog_24490	NA	unknown function
UHGV-0122438_11	eggNOG-mapper	1235793.C809_02212	NA	NA
UHGV-0122438_12	PHROG	phrog_25456	NA	unknown function
UHGV-0122438_13	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122438_13	UniRef90	UniRef90_UPI001F28F4A1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0122438_13	eggNOG-mapper	1234679.BN424_2639	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0122438_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0122438_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0122438_14	PHROG	phrog_3657	NA	unknown function
UHGV-0122438_14	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-0122438_16	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0122438_16	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0122438_16	UniRef90	UniRef90_A0A011UJY5	NA	NA
UHGV-0122438_16	eggNOG-mapper	1004785.AMBLS11_12500	NA	NA
UHGV-0122438_16	Pfam	PF12684	NA	DUF3799
UHGV-0122438_16	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0122438_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0122438_21	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0122438_21	UniRef90	UniRef90_R6V613	Phage antirepressor protein	NA
UHGV-0122438_21	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-0122438_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0122438_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0122438_21	COG	COG3617	Prophage antirepressor	NA
UHGV-0122438_21	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0122438_22	Structural annotation	PF12729	NA	NA
UHGV-0122438_24	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0122438_24	UniRef90	UniRef90_R7BGJ4	Phage regulatory protein rha family	NA
UHGV-0122438_24	eggNOG-mapper	411459.RUMOBE_01391	NA	NA
UHGV-0122438_24	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0122438_24	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0122438_24	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0122438_24	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0122438_25	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0122438_25	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0122438_25	UniRef90	UniRef90_A0A1Q6LL60	HTH cro/C1-type domain-containing protein	NA
UHGV-0122438_25	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0122438_25	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0122438_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122438_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0122438_25	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0122438_26	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0122438_26	Structural annotation	NF040910	NA	NA
UHGV-0122438_29	PHROG	phrog_17196	kinase	other
UHGV-0122438_29	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0122438_29	Structural annotation	PF13619, PF17577, PF19537, COG3536	NA	NA
UHGV-0122438_30	PHROG	phrog_2566	NA	unknown function
UHGV-0122438_31	PHROG	phrog_18190	NA	unknown function
UHGV-0122438_31	UniRef90	UniRef90_A0A3A8WLR6	Peptidase S74 domain-containing protein	NA
UHGV-0122438_31	eggNOG-mapper	1298920.KI911353_gene2679	NA	NA
UHGV-0122438_31	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0122438_31	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-0122438_32	PHROG	phrog_1194	NA	unknown function
UHGV-0122438_32	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0122438_32	Pfam	PF20458	NA	DUF6711
UHGV-0122438_32	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0122438_33	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0122438_33	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0122438_33	UniRef90	UniRef90_A0A416G2X7	AntA domain-containing protein	NA
UHGV-0122438_33	eggNOG-mapper	552396.HMPREF0863_00756	P22_AR N-terminal domain	NA
UHGV-0122438_33	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0122438_33	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0122438_33	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0122438_35	UniRef90	UniRef90_A0A1C5WHU9	Ribbon-helix-helix protein, copG family	NA
UHGV-0122438_35	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0122438_35	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0122438_36	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0122438_37	PHROG	phrog_9418	NA	unknown function
UHGV-0122438_37	UniRef90	UniRef90_A0A318EUB9	Zinc ribbon protein	NA
UHGV-0122438_37	eggNOG-mapper	658655.HMPREF0988_00910	NA	NA
UHGV-0122438_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0122438_38	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0122438_38	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0122438_39	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0122438_39	PHROG	phrog_670	endolysin	lysis
UHGV-0122438_39	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0122438_39	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0122438_39	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0122438_39	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0122438_39	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0122438_41	PHROG	phrog_36112	NA	unknown function
UHGV-0122438_41	eggNOG-mapper	476272.RUMHYD_01969	NA	NA
UHGV-0122438_41	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0122438_42	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0122438_42	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0122438_43	Structural annotation	PF05657	NA	NA
UHGV-0122438_44	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0122438_45	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0122438_46	PHROG	phrog_443	holin	lysis
UHGV-0122438_46	UniRef90	UniRef90_UPI000CF1F0AD	holin	NA
UHGV-0122438_46	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0122438_46	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0122438_46	Structural annotation	PF16945	NA	NA
UHGV-0122438_47	PHROG	phrog_1863	NA	unknown function
UHGV-0122438_47	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0122438_48	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0122438_48	Structural annotation	TIGR01560	NA	NA
UHGV-0122438_49	PHROG	phrog_774	NA	unknown function
UHGV-0122438_49	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0122438_50	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0122438_50	Structural annotation	PF21169	NA	NA
UHGV-0122438_51	PHROG	phrog_29	major head protein	head and packaging
UHGV-0122438_51	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0122438_51	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0122438_51	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0122438_51	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0122438_52	PHROG	phrog_909	major head protein	head and packaging
UHGV-0122438_52	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0122438_52	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-0122438_53	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0122438_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0122438_54	UniRef90	UniRef90_A0A3R6ASF4	Phage portal protein	NA
UHGV-0122438_54	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0122438_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0122438_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0122438_56	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122438_56	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0122438_56	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0122438_56	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0122438_56	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0122438_57	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0122438_57	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0122438_57	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0122438_57	COG	COG5410	NA	NA
UHGV-0122438_57	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0122438_63	PHROG	phrog_28328	NA	unknown function
UHGV-0122438_67	PHROG	phrog_1485	NA	unknown function
UHGV-0122438_67	UniRef90	UniRef90_R6M0A1	NA	NA
UHGV-0122438_67	eggNOG-mapper	240302.BN982_00203	NA	NA
UHGV-0122438_67	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0122438_67	Structural annotation	PF13384	NA	NA
UHGV-0122438_69	PHROG	phrog_21026	NA	unknown function
UHGV-0122438_73	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0122438_73	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0122438_74	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122438_74	UniRef90	UniRef90_A0A132HCB8	HNHc domain-containing protein	NA
UHGV-0122438_74	eggNOG-mapper	1123371.ATXH01000019_gene608	HNH nucleases	NA
UHGV-0122438_74	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0122438_74	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0122438_74	Structural annotation	COG1403	NA	NA
UHGV-0122438_75	PHROG	phrog_1257	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UHGV-0122438_76	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0122438_76	UniRef90	UniRef90_A0A415M7P1	XRE family transcriptional regulator	NA
UHGV-0122438_76	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0122438_76	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0122438_76	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0122438_83	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0122438_83	Structural annotation	PF13058	NA	NA
UHGV-0122438_84	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0122438_84	UniRef90	UniRef90_A0A1C7I613	Rha family transcriptional regulator	NA
UHGV-0122438_84	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0122438_84	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0122438_84	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0122438_84	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0122438_84	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0122438_85	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0122438_86	PHROG	phrog_20016	NA	unknown function
UHGV-0122438_86	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0122438_86	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0122438_86	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0122438_88	PHROG	phrog_16490	NA	unknown function
UHGV-0122438_88	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0122438_89	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0122438_90	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0122438_90	Structural annotation	NF033819	NA	NA
UHGV-0122438_92	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0122438_92	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0122438_92	UniRef90	UniRef90_A0A1C5S3W3	Stage II sporulation protein AC	NA
UHGV-0122438_92	eggNOG-mapper	1449050.JNLE01000003_gene3645	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0122438_92	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0122438_92	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0122438_92	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0122438_92	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0122438_92	Structural annotation	PF04542, MF_04164, TIGR02846	NA	NA
UHGV-0122438_93	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0122438_93	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0122438_93	UniRef90	UniRef90_R6LXZ8	RNA polymerase sigma factor	NA
UHGV-0122438_93	eggNOG-mapper	1449050.JNLE01000003_gene3646	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0122438_93	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0122438_93	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0122438_93	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0122438_93	NCBIFam	NF006158.0	RNA polymerase sporulation sigma factor SigE	NA
UHGV-0122438_93	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0122438_93	Structural annotation	PF04542, MF_00961, NF006158, COG1191	NA	NA