UHGV-0122481

Genome information

Genome length 36,656 bps

CDS count 47

Completeness 92.20% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122481
vOTU ID	vOTU-069906
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_339467
BioSample	SAMN01915206
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.20% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.75
Jumbo phage	No

Genome content
Genome length	36,656 bps
GC content	48.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.51%
Average CDS length	723.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122481_1	Structural annotation	PF02973	NA	NA
UHGV-0122481_2	Structural annotation	PF10651, NF009453	NA	NA
UHGV-0122481_4	PHROG	phrog_6616	tail protein	tail
UHGV-0122481_4	eggNOG-mapper	1507.HMPREF0262_00217	NA	NA
UHGV-0122481_4	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0122481_5	PHROG	phrog_1194	NA	unknown function
UHGV-0122481_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0122481_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0122481_6	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-0122481_6	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0122481_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0122481_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0122481_7	PHROG	phrog_8300	NA	unknown function
UHGV-0122481_7	eggNOG-mapper	1122918.KB907248_gene4491	NA	NA
UHGV-0122481_7	Structural annotation	PF06854	NA	NA
UHGV-0122481_8	PHROG	phrog_820	major tail protein	tail
UHGV-0122481_8	UniRef90	UniRef90_R6DLA9	Conserved domain protein	NA
UHGV-0122481_8	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0122481_8	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0122481_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0122481_9	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0122481_9	UniRef90	UniRef90_UPI0015BCA354	minor capsid protein	NA
UHGV-0122481_9	eggNOG-mapper	394503.Ccel_3286	NA	NA
UHGV-0122481_9	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0122481_9	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0122481_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0122481_10	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-0122481_11	PHROG	phrog_8710	NA	unknown function
UHGV-0122481_11	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0122481_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0122481_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0122481_12	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0122481_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0122481_13	UniRef90	UniRef90_R6DLA5	Phage major capsid protein	NA
UHGV-0122481_13	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0122481_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0122481_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0122481_14	Structural annotation	MF_02110	NA	NA
UHGV-0122481_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0122481_16	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-0122481_16	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0122481_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0122481_16	COG	COG2369	NA	NA
UHGV-0122481_16	Structural annotation	PF06152	NA	NA
UHGV-0122481_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0122481_17	UniRef90	UniRef90_R6E386	Phage minor capsid protein	NA
UHGV-0122481_17	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0122481_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0122481_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0122481_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122481_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0122481_18	UniRef90	UniRef90_A0A1M4ZB17	Phage terminase, large subunit, PBSX family	NA
UHGV-0122481_18	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0122481_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122481_18	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0122481_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0122481_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0122481_19	UniRef90	UniRef90_UPI000E4E3378	terminase small subunit	NA
UHGV-0122481_19	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0122481_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0122481_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0122481_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0122481_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122481_21	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0122481_21	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0122481_21	Structural annotation	PF04545	NA	NA
UHGV-0122481_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0122481_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0122481_24	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0122481_24	UniRef90	UniRef90_A0A3D1I1E6	ParB domain-containing protein	NA
UHGV-0122481_24	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-0122481_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0122481_24	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0122481_24	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0122481_24	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0122481_25	Structural annotation	NF001606	NA	NA
UHGV-0122481_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0122481_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122481_26	UniRef90	UniRef90_R6HY68	Endodeoxyribonuclease RusA	NA
UHGV-0122481_26	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0122481_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0122481_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0122481_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0122481_28	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0122481_28	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0122481_28	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-0122481_28	eggNOG-mapper	552396.HMPREF0863_02435	Primase C terminal 2 (PriCT-2)	NA
UHGV-0122481_28	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0122481_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0122481_28	COG	COG3598	RecA-family ATPase	NA
UHGV-0122481_28	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0122481_29	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0122481_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0122481_29	UniRef90	UniRef90_R6I0L6	Type III restriction protein res subunit	NA
UHGV-0122481_29	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-0122481_29	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0122481_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0122481_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0122481_29	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0122481_29	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0122481_30	PHROG	phrog_2698	NA	unknown function
UHGV-0122481_30	UniRef90	UniRef90_A0A417IL23	NA	NA
UHGV-0122481_30	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-0122481_30	Structural annotation	PF05037	NA	NA
UHGV-0122481_31	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122481_31	UniRef90	UniRef90_UPI001411FE86	ATP-binding protein	NA
UHGV-0122481_31	eggNOG-mapper	394503.Ccel_3309	AAA domain	NA
UHGV-0122481_31	Pfam	PF13479	AAA domain	AAA_24
UHGV-0122481_31	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0122481_32	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0122481_32	PHROG	phrog_1499	NA	unknown function
UHGV-0122481_32	UniRef90	UniRef90_R6IXY5	AAA_15 domain-containing protein	NA
UHGV-0122481_32	eggNOG-mapper	411462.DORLON_00812	AAA ATPase domain	NA
UHGV-0122481_32	PADLOC	AAA_15	NA	NA
UHGV-0122481_32	Pfam	PF13476	AAA domain	AAA_23
UHGV-0122481_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0122481_32	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0122481_33	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0122481_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122481_33	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-0122481_33	eggNOG-mapper	203119.Cthe_0364	Helix-turn-helix XRE-family like proteins	NA
UHGV-0122481_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122481_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0122481_33	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0122481_35	UniRef90	UniRef90_UPI0009F73A1A	pentapeptide repeat-containing protein	NA
UHGV-0122481_35	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-0122481_35	COG	COG1357	NA	NA
UHGV-0122481_36	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0122481_36	PHROG	phrog_18750	NA	unknown function
UHGV-0122481_36	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0122481_36	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-0122481_36	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0122481_36	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0122481_36	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0122481_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0122481_39	UniRef90	UniRef90_A0A0B0HIQ0	HTH-type transcriptional regulator Xre	NA
UHGV-0122481_39	eggNOG-mapper	997346.HMPREF9374_3915	Helix-turn-helix XRE-family like proteins	NA
UHGV-0122481_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122481_39	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0122481_40	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0122481_40	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0122481_40	UniRef90	UniRef90_R6Q8R6	Repressor LexA	NA
UHGV-0122481_40	eggNOG-mapper	938278.CAJO01000051_gene819	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0122481_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0122481_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122481_40	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0122481_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0122481_41	PHROG	phrog_1847	NA	unknown function
UHGV-0122481_41	UniRef90	UniRef90_A0A1E3UAB7	T5orf172 domain-containing protein	NA
UHGV-0122481_41	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0122481_41	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0122481_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0122481_41	Structural annotation	PF19962	NA	NA
UHGV-0122481_42	KOfam	K14059	int; integrase	NA
UHGV-0122481_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0122481_42	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-0122481_42	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0122481_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122481_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0122481_42	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0122481_46	eggNOG-mapper	1265845.PWEIH_11360	NA	NA
UHGV-0122481_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0122481_47	UniRef90	UniRef90_A0A350XVI5	Minor capsid protein (Fragment)	NA
UHGV-0122481_47	eggNOG-mapper	86416.Clopa_0572	Phage minor capsid protein 2	NA
UHGV-0122481_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0122481_47	COG	COG2369	NA	NA