UHGV-0122484

Genome information

Genome length 42,442 bps

CDS count 68

Completeness 96.04% (high-quality)

geNomad score 0.9600

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122484
vOTU ID	vOTU-070261
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_335027
BioSample	SAMN00792056
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9600
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.11
Jumbo phage	No

Genome content
Genome length	42,442 bps
GC content	48.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	84.31%
Average CDS length	530.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122484_2	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0122484_2	UniRef90	UniRef90_A0A3B9DV76	HTH_59 domain-containing protein	NA
UHGV-0122484_2	eggNOG-mapper	592028.GCWU000321_01370	NA	NA
UHGV-0122484_2	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0122484_2	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0122484_5	PHROG	phrog_10797	NA	unknown function
UHGV-0122484_5	UniRef90	UniRef90_A0A0X8K8T8	Glycoprotease	NA
UHGV-0122484_5	eggNOG-mapper	742743.HMPREF9453_00542	NA	NA
UHGV-0122484_5	Structural annotation	PF20132	NA	NA
UHGV-0122484_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0122484_6	PHROG	phrog_291	endolysin	lysis
UHGV-0122484_6	UniRef90	UniRef90_UPI001D0872FD	glycosyl hydrolase family 25	NA
UHGV-0122484_6	eggNOG-mapper	910314.HMPREF9220_0603	Glycosyl hydrolases family 25	NA
UHGV-0122484_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0122484_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0122484_6	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0122484_7	PHROG	phrog_199	holin	lysis
UHGV-0122484_7	UniRef90	UniRef90_A0A1G5VKB0	Bacteriophage holin family protein	NA
UHGV-0122484_7	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-0122484_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0122484_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0122484_10	KOfam	K14059	int; integrase	NA
UHGV-0122484_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0122484_10	UniRef90	UniRef90_R7MX88	Tyr recombinase domain-containing protein	NA
UHGV-0122484_10	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0122484_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122484_10	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0122484_10	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0122484_12	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0122484_12	UniRef90	UniRef90_UPI00034E606D	phage tail protein	NA
UHGV-0122484_12	eggNOG-mapper	927704.SELR_16630	Phage tail-collar fibre protein	NA
UHGV-0122484_12	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0122484_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0122484_12	Structural annotation	PF12571	NA	NA
UHGV-0122484_13	PHROG	phrog_48	tail protein	tail
UHGV-0122484_13	UniRef90	UniRef90_UPI00034E1C3D	phage tail protein I	NA
UHGV-0122484_13	eggNOG-mapper	927704.SELR_16640	Phage tail protein (Tail_P2_I)	NA
UHGV-0122484_13	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0122484_13	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0122484_13	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0122484_13	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0122484_14	PHROG	phrog_6	baseplate protein	tail
UHGV-0122484_14	UniRef90	UniRef90_UPI001D032AB4	baseplate J/gp47 family protein	NA
UHGV-0122484_14	eggNOG-mapper	927704.SELR_16650	Baseplate J-like protein	NA
UHGV-0122484_14	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0122484_14	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0122484_14	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0122484_15	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0122484_15	UniRef90	UniRef90_A0A6I2UI30	GPW_gp25 domain-containing protein	NA
UHGV-0122484_15	eggNOG-mapper	1064535.MELS_1110	GPW Gp25 family protein	NA
UHGV-0122484_15	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0122484_15	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0122484_16	PHROG	phrog_76	tail protein	tail
UHGV-0122484_16	UniRef90	UniRef90_UPI0011C8292A	phage tail protein	NA
UHGV-0122484_16	eggNOG-mapper	1064535.MELS_1109	Phage P2 GpU	NA
UHGV-0122484_16	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0122484_16	COG	COG3499	NA	NA
UHGV-0122484_16	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0122484_17	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0122484_17	UniRef90	UniRef90_UPI000420570C	PAAR domain-containing protein	NA
UHGV-0122484_17	eggNOG-mapper	927704.SELR_16680	PAAR repeat-containing protein	NA
UHGV-0122484_17	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0122484_17	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0122484_17	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0122484_18	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0122484_18	UniRef90	UniRef90_G0VPF2	Prophage MuMc02	NA
UHGV-0122484_18	eggNOG-mapper	1273103.NM10_08049	Phage baseplate assembly protein V	NA
UHGV-0122484_18	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0122484_18	Structural annotation	PF05606, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0122484_19	KOfam	K06905	NA	NA
UHGV-0122484_19	PHROG	phrog_52	tail protein	tail
UHGV-0122484_19	UniRef90	UniRef90_G0VPF1	Putative phage regulatory protein	NA
UHGV-0122484_19	eggNOG-mapper	1273103.NM10_08044	COG3500 Phage protein D	NA
UHGV-0122484_19	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0122484_19	COG	COG3500	NA	NA
UHGV-0122484_19	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0122484_20	PHROG	phrog_46	tail protein	tail
UHGV-0122484_20	UniRef90	UniRef90_UPI001CD3FA8C	tail protein X	NA
UHGV-0122484_20	eggNOG-mapper	1064535.MELS_1106	Phage Tail Protein X	NA
UHGV-0122484_20	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0122484_20	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0122484_20	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0122484_21	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0122484_21	UniRef90	UniRef90_A0A2S0MA97	Phage tail tape measure protein	NA
UHGV-0122484_21	eggNOG-mapper	1064535.MELS_1105	Phage-related minor tail protein	NA
UHGV-0122484_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0122484_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0122484_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0122484_21	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0122484_23	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0122484_23	UniRef90	UniRef90_UPI0011A27A71	phage tail assembly protein	NA
UHGV-0122484_23	eggNOG-mapper	1444309.JAQG01000145_gene2685	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0122484_23	Structural annotation	PF10109	NA	NA
UHGV-0122484_24	KOfam	K06908	NA	NA
UHGV-0122484_24	PHROG	phrog_55	head closure	connector
UHGV-0122484_24	UniRef90	UniRef90_S7J3W7	Phage major tail tube protein	NA
UHGV-0122484_24	eggNOG-mapper	1064535.MELS_1103	tail tube protein	NA
UHGV-0122484_24	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0122484_24	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0122484_24	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0122484_25	KOfam	K06907	NA	NA
UHGV-0122484_25	PHROG	phrog_23	tail sheath	tail
UHGV-0122484_25	UniRef90	UniRef90_A0A316QEM2	Phage tail protein	NA
UHGV-0122484_25	eggNOG-mapper	1273103.NM10_02222	COG3497 Phage tail sheath protein FI	NA
UHGV-0122484_25	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0122484_25	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0122484_27	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0122484_27	eggNOG-mapper	1064535.MELS_1100	NA	NA
UHGV-0122484_27	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0122484_28	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0122484_28	UniRef90	UniRef90_UPI001BE5FD78	phage tail protein	NA
UHGV-0122484_28	eggNOG-mapper	1064535.MELS_1099	Prophage minor tail protein Z (GPZ)	NA
UHGV-0122484_28	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0122484_28	Structural annotation	PF06763	NA	NA
UHGV-0122484_29	PHROG	phrog_2551	minor tail protein	tail
UHGV-0122484_29	UniRef90	UniRef90_A0A1Y4MP56	Sugar ABC transporter ATP-binding protein	NA
UHGV-0122484_29	eggNOG-mapper	1064535.MELS_1098	NA	NA
UHGV-0122484_29	Structural annotation	PF13856	NA	NA
UHGV-0122484_31	PHROG	phrog_29	major head protein	head and packaging
UHGV-0122484_31	UniRef90	UniRef90_UPI00073E3456	major capsid protein	NA
UHGV-0122484_31	eggNOG-mapper	1064535.MELS_1096	Phage major capsid protein E	NA
UHGV-0122484_31	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0122484_31	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0122484_32	PHROG	phrog_49	head decoration	head and packaging
UHGV-0122484_32	UniRef90	UniRef90_UPI00073F9C7C	head decoration protein	NA
UHGV-0122484_32	eggNOG-mapper	1273103.NM10_02257	Bacteriophage lambda head decoration protein D	NA
UHGV-0122484_32	Structural annotation	PF02924	NA	NA
UHGV-0122484_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0122484_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0122484_33	UniRef90	UniRef90_UPI00073EB35F	Clp protease ClpP	NA
UHGV-0122484_33	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-0122484_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0122484_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0122484_33	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0122484_34	PHROG	phrog_21	portal protein	head and packaging
UHGV-0122484_34	UniRef90	UniRef90_UPI001E50A69D	phage portal protein	NA
UHGV-0122484_34	eggNOG-mapper	1280706.AUJE01000010_gene655	Phage portal protein	NA
UHGV-0122484_34	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0122484_34	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0122484_34	COG	COG5511	Phage capsid protein	NA
UHGV-0122484_34	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0122484_35	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0122484_35	UniRef90	UniRef90_UPI00034E6D13	NA	NA
UHGV-0122484_35	eggNOG-mapper	1064535.MELS_1092	NA	NA
UHGV-0122484_35	Pfam	PF19645	NA	DUF6148
UHGV-0122484_35	Structural annotation	PF19645	NA	NA
UHGV-0122484_36	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0122484_36	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0122484_36	UniRef90	UniRef90_A0A6N7W1I2	Terminase	NA
UHGV-0122484_36	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0122484_36	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0122484_36	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0122484_36	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0122484_36	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0122484_36	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0122484_37	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0122484_37	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0122484_37	eggNOG-mapper	1273103.NM10_02282	NA	NA
UHGV-0122484_37	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0122484_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122484_38	UniRef90	UniRef90_A0A329NRW1	NA	NA
UHGV-0122484_38	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-0122484_38	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0122484_43	PHROG	phrog_236	nucleotide kinase	other
UHGV-0122484_43	UniRef90	UniRef90_A0A6I2UE94	NA	NA
UHGV-0122484_43	Pfam	PF11753	NA	DUF3310
UHGV-0122484_44	UniRef90	UniRef90_UPI001C0340B7	NA	NA
UHGV-0122484_44	eggNOG-mapper	679201.HMPREF9334_00850	NA	NA
UHGV-0122484_44	Pfam	PF07866	NA	DUF1653
UHGV-0122484_44	COG	COG4728	NA	NA
UHGV-0122484_45	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0122484_45	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0122484_45	UniRef90	UniRef90_A0A355U3P8	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0122484_45	eggNOG-mapper	246194.CHY_0300	dUTP diphosphatase	NA
UHGV-0122484_45	Pfam	PF00692	dUTPase	dUTPase
UHGV-0122484_45	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0122484_45	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0122484_47	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0122484_47	UniRef90	UniRef90_A0A4D6AVD0	Putative methyltransferase	NA
UHGV-0122484_47	eggNOG-mapper	706434.HMPREF9429_00385	methyltransferase	NA
UHGV-0122484_47	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0122484_47	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0122484_47	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0122484_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0122484_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122484_49	UniRef90	UniRef90_C9LLV4	Single-stranded DNA-binding protein	NA
UHGV-0122484_49	eggNOG-mapper	592028.GCWU000321_00485	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0122484_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0122484_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0122484_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0122484_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0122484_49	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0122484_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0122484_53	Structural annotation	PF01844, NF040563	NA	NA
UHGV-0122484_59	PHROG	phrog_14367	NA	unknown function
UHGV-0122484_59	UniRef90	UniRef90_H1CYZ6	LysM domain-containing protein	NA
UHGV-0122484_59	eggNOG-mapper	568816.Acin_1401	LysM domain	NA
UHGV-0122484_59	COG	COG1388	LysM repeat	NA
UHGV-0122484_59	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0122484_61	PHROG	phrog_585	NA	unknown function
UHGV-0122484_61	UniRef90	UniRef90_UPI0004840DCF	NA	NA
UHGV-0122484_61	eggNOG-mapper	1280692.AUJL01000004_gene865	NA	NA
UHGV-0122484_61	Pfam	PF10711	NA	DUF2513
UHGV-0122484_61	Structural annotation	PF10711, MF_01819, TIGR04176, COG1695	NA	NA
UHGV-0122484_63	UniRef90	UniRef90_E2ZAE3	HTH_17 domain-containing protein	NA
UHGV-0122484_63	eggNOG-mapper	706434.HMPREF9429_00399	Helix-turn-helix domain	NA
UHGV-0122484_63	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0122484_63	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0122484_64	UniRef90	UniRef90_A0A2N5PKD3	Phage repressor protein	NA
UHGV-0122484_64	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0122484_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0122484_64	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0122484_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0122484_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122484_65	UniRef90	UniRef90_R6WYZ7	Phage-like protein	NA
UHGV-0122484_65	eggNOG-mapper	1262449.CP6013_3167	Helix-turn-helix domain protein	NA
UHGV-0122484_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122484_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0122484_65	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0122484_67	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0122484_67	UniRef90	UniRef90_UPI00195C1B82	Abi family protein	NA
UHGV-0122484_67	eggNOG-mapper	927704.SELR_16790	Abi-like protein	NA
UHGV-0122484_67	PADLOC	AbiD	AbiD	Abi
UHGV-0122484_67	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0122484_67	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0122484_67	Structural annotation	PF07751, COG4823	NA	NA