UHGV-0122534

Genome information

Genome length 35,277 bps

CDS count 62

Completeness 96.83% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122534
vOTU ID	vOTU-012442
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_321068
BioSample	SAMN00715208
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.25
Jumbo phage	No

Genome content
Genome length	35,277 bps
GC content	47.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.01%
Average CDS length	535.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122534_1	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0122534_1	UniRef90	UniRef90_UPI0009356454	helix-turn-helix domain-containing protein	NA
UHGV-0122534_1	eggNOG-mapper	1401067.HMPREF0872_03330	NA	NA
UHGV-0122534_1	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0122534_1	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0122534_2	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122534_2	UniRef90	UniRef90_A0A8B1AP42	AP2 domain-containing protein	NA
UHGV-0122534_2	eggNOG-mapper	936580.HMPREF1516_0698	NA	NA
UHGV-0122534_2	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0122534_3	PHROG	phrog_14350	NA	unknown function
UHGV-0122534_3	UniRef90	UniRef90_F7NK80	NA	NA
UHGV-0122534_3	eggNOG-mapper	679201.HMPREF9334_00497	NA	NA
UHGV-0122534_4	UniRef90	UniRef90_UPI0008E3B79D	ParB N-terminal domain-containing protein	NA
UHGV-0122534_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0122534_5	UniRef90	UniRef90_S7HTA2	TarH domain-containing protein	NA
UHGV-0122534_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0122534_6	PHROG	phrog_291	endolysin	lysis
UHGV-0122534_6	UniRef90	UniRef90_A0A0U1L0T6	Glycosyl hydrolase, family 25	NA
UHGV-0122534_6	eggNOG-mapper	1232428.CAVO010000067_gene417	Glycosyl hydrolases family 25	NA
UHGV-0122534_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0122534_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0122534_6	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0122534_7	PHROG	phrog_28789	NA	unknown function
UHGV-0122534_7	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0122534_7	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0122534_9	PHROG	phrog_38707	NA	unknown function
UHGV-0122534_9	eggNOG-mapper	1273103.NM10_08089	tail collar domain protein	NA
UHGV-0122534_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0122534_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0122534_11	PHROG	phrog_1084	NA	unknown function
UHGV-0122534_11	eggNOG-mapper	1273103.NM10_08079	NA	NA
UHGV-0122534_11	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0122534_12	PHROG	phrog_1863	NA	unknown function
UHGV-0122534_14	PHROG	phrog_32639	NA	unknown function
UHGV-0122534_15	KOfam	K14059	int; integrase	NA
UHGV-0122534_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0122534_15	UniRef90	UniRef90_S7J9K9	Site-specific tyrosine recombinase XerC	NA
UHGV-0122534_15	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0122534_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122534_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0122534_15	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0122534_18	PHROG	phrog_11393	tail fiber protein	tail
UHGV-0122534_18	eggNOG-mapper	1111454.HMPREF1250_0201	tail collar domain protein	NA
UHGV-0122534_18	COG	COG4675	Phage tail collar domain	NA
UHGV-0122534_19	PHROG	phrog_521	tail protein	tail
UHGV-0122534_19	UniRef90	UniRef90_I0GWS5	Phage related protein	NA
UHGV-0122534_19	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0122534_19	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0122534_19	COG	COG3778	NA	NA
UHGV-0122534_19	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0122534_20	PHROG	phrog_6	baseplate protein	tail
UHGV-0122534_20	UniRef90	UniRef90_A0A2S0M4L2	Baseplate_J domain-containing protein	NA
UHGV-0122534_20	eggNOG-mapper	1273103.NM10_00999	Baseplate J-like protein	NA
UHGV-0122534_20	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0122534_20	COG	COG3299	NA	NA
UHGV-0122534_20	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0122534_21	PHROG	phrog_120	baseplate protein	tail
UHGV-0122534_21	UniRef90	UniRef90_A0A2S0M4I9	NA	NA
UHGV-0122534_21	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0122534_21	Pfam	PF10934	NA	DUF2634
UHGV-0122534_21	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0122534_21	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0122534_22	PHROG	phrog_579	NA	unknown function
UHGV-0122534_22	UniRef90	UniRef90_A0A2S0M4I6	NA	NA
UHGV-0122534_22	eggNOG-mapper	1123250.KB908414_gene2116	NA	NA
UHGV-0122534_22	Pfam	PF10844	NA	DUF2577
UHGV-0122534_22	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0122534_23	PHROG	phrog_400	tail protein	tail
UHGV-0122534_23	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0122534_23	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0122534_23	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0122534_23	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0122534_24	PHROG	phrog_5184	NA	unknown function
UHGV-0122534_24	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0122534_24	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0122534_24	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0122534_24	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0122534_25	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0122534_25	UniRef90	UniRef90_UPI001645A310	phage tail tape measure protein	NA
UHGV-0122534_25	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0122534_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0122534_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0122534_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0122534_25	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0122534_26	PHROG	phrog_2722	NA	unknown function
UHGV-0122534_27	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0122534_27	UniRef90	UniRef90_UPI001645A435	XkdN-like protein	NA
UHGV-0122534_27	eggNOG-mapper	1232428.CAVO010000003_gene1002	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0122534_27	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0122534_27	Structural annotation	PF08890	NA	NA
UHGV-0122534_28	PHROG	phrog_365	tail protein	tail
UHGV-0122534_28	UniRef90	UniRef90_A0A2S0M4K4	Phage portal protein	NA
UHGV-0122534_28	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0122534_28	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0122534_28	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0122534_29	PHROG	phrog_1480	tail sheath	tail
UHGV-0122534_29	UniRef90	UniRef90_UPI0016491346	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0122534_29	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0122534_29	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0122534_29	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0122534_29	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0122534_30	PHROG	phrog_525	NA	unknown function
UHGV-0122534_30	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-0122534_30	Pfam	PF20765	NA	DUF6838
UHGV-0122534_31	UniRef90	UniRef90_UPI001645C731	HK97 gp10 family phage protein	NA
UHGV-0122534_31	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0122534_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0122534_31	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0122534_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-0122534_32	UniRef90	UniRef90_UPI001648A1FB	phage head closure protein	NA
UHGV-0122534_32	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0122534_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0122534_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0122534_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0122534_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0122534_33	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0122534_33	UniRef90	UniRef90_UPI001647B235	head-tail connector protein	NA
UHGV-0122534_33	eggNOG-mapper	861450.HMPREF0080_02048	Phage gp6-like head-tail connector protein	NA
UHGV-0122534_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0122534_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0122534_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0122534_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0122534_34	UniRef90	UniRef90_UPI000E53779F	phage major capsid protein	NA
UHGV-0122534_34	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0122534_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0122534_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0122534_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0122534_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0122534_35	KOfam	K06904	NA	NA
UHGV-0122534_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0122534_35	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-0122534_35	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-0122534_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0122534_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0122534_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0122534_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0122534_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0122534_36	UniRef90	UniRef90_UPI0016454394	phage portal protein	NA
UHGV-0122534_36	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0122534_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0122534_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0122534_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0122534_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0122534_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0122534_37	UniRef90	UniRef90_UPI00164586AB	terminase large subunit	NA
UHGV-0122534_37	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0122534_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0122534_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0122534_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0122534_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0122534_38	PHROG	phrog_1066	NA	unknown function
UHGV-0122534_38	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0122534_38	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0122534_39	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122534_39	UniRef90	UniRef90_A0A8D4UTL0	HNHc domain-containing protein	NA
UHGV-0122534_39	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0122534_39	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0122534_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0122534_39	Structural annotation	NF008448	NA	NA
UHGV-0122534_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122534_41	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0122534_41	eggNOG-mapper	1265507.KB899636_gene1634	NA	NA
UHGV-0122534_41	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0122534_42	PHROG	phrog_37395	NA	unknown function
UHGV-0122534_43	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122534_43	UniRef90	UniRef90_UPI001E47E116	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0122534_43	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0122534_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0122534_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122534_44	eggNOG-mapper	1151292.QEW_0318	NA	NA
UHGV-0122534_44	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0122534_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0122534_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122534_45	UniRef90	UniRef90_UPI0013B408A0	single-stranded DNA-binding protein	NA
UHGV-0122534_45	eggNOG-mapper	1232410.KI421428_gene1074	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0122534_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0122534_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0122534_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0122534_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0122534_45	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0122534_49	PHROG	phrog_236	nucleotide kinase	other
UHGV-0122534_49	UniRef90	UniRef90_UPI001F0F7AF9	NA	NA
UHGV-0122534_49	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-0122534_49	Pfam	PF11753	NA	DUF3310
UHGV-0122534_49	Structural annotation	PF11753	NA	NA
UHGV-0122534_52	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122534_52	UniRef90	UniRef90_UPI0018C7AF31	NA	NA
UHGV-0122534_52	eggNOG-mapper	706434.HMPREF9429_00177	NA	NA
UHGV-0122534_52	Structural annotation	COG2250	NA	NA
UHGV-0122534_55	PHROG	phrog_9403	NA	unknown function
UHGV-0122534_56	PHROG	phrog_3777	NA	unknown function
UHGV-0122534_56	UniRef90	UniRef90_A0A410PX07	NA	NA
UHGV-0122534_56	eggNOG-mapper	1504823.CCMM01000006_gene385	Antirestriction protein (ArdA)	NA
UHGV-0122534_56	Pfam	PF12957	NA	DUF3846
UHGV-0122534_56	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0122534_62	PHROG	phrog_2232	NA	unknown function
UHGV-0122534_62	UniRef90	UniRef90_A0A848EW21	NA	NA
UHGV-0122534_62	eggNOG-mapper	883156.HMPREF9282_01213	NA	NA
UHGV-0122534_62	Pfam	PF14337	Abortive infection alpha	Abi_alpha