UHGV-0122645

Genome information

Genome length 21,296 bps

CDS count 33

Completeness 59.73% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122645
vOTU ID	vOTU-032347
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_336164
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.62
Jumbo phage	No

Genome content
Genome length	21,296 bps
GC content	46.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.96%
Average CDS length	610.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122645_2	eggNOG-mapper	478749.BRYFOR_05797	NA	NA
UHGV-0122645_3	PHROG	phrog_5881	NA	unknown function
UHGV-0122645_3	Structural annotation	PF14524, TIGR04204	NA	NA
UHGV-0122645_4	PHROG	phrog_962	holin	lysis
UHGV-0122645_4	UniRef90	UniRef90_UPI00085C48B3	phage holin	NA
UHGV-0122645_4	eggNOG-mapper	887929.HMP0721_1251	Bacteriophage holin	NA
UHGV-0122645_4	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0122645_4	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0122645_4	COG	COG5546	NA	NA
UHGV-0122645_4	Structural annotation	COG5546	NA	NA
UHGV-0122645_6	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0122645_6	PHROG	phrog_894	endolysin	lysis
UHGV-0122645_6	UniRef90	UniRef90_A0A1M6JRQ3	Peptidase M15	NA
UHGV-0122645_6	eggNOG-mapper	445971.ANASTE_02319	Peptidase M15	NA
UHGV-0122645_6	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0122645_6	COG	COG3108	NA	NA
UHGV-0122645_6	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0122645_7	PHROG	phrog_27545	NA	unknown function
UHGV-0122645_7	UniRef90	UniRef90_R6EL00	Glycosyl hydrolase family 18 family protein	NA
UHGV-0122645_7	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0122645_10	KOfam	K10461	KLHL24_35; kelch-like protein 24/35	NA
UHGV-0122645_10	PHROG	phrog_27227	NA	unknown function
UHGV-0122645_10	Pfam	PF13854	Kelch motif	Kelch_5
UHGV-0122645_10	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0122645_12	PHROG	phrog_521	tail protein	tail
UHGV-0122645_12	UniRef90	UniRef90_A0A7X3GDP9	NA	NA
UHGV-0122645_12	eggNOG-mapper	469616.FMAG_00546	NA	NA
UHGV-0122645_12	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0122645_12	COG	COG3778	NA	NA
UHGV-0122645_12	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0122645_13	PHROG	phrog_6	baseplate protein	tail
UHGV-0122645_13	UniRef90	UniRef90_A0A7X3GDN4	Baseplate J family protein	NA
UHGV-0122645_13	eggNOG-mapper	293826.Amet_2430	Baseplate J-like protein	NA
UHGV-0122645_13	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0122645_13	COG	COG3299	NA	NA
UHGV-0122645_13	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0122645_14	PHROG	phrog_120	baseplate protein	tail
UHGV-0122645_14	UniRef90	UniRef90_A0A7X5SR09	NA	NA
UHGV-0122645_14	eggNOG-mapper	536232.CLM_1674	NA	NA
UHGV-0122645_14	Pfam	PF10934	NA	DUF2634
UHGV-0122645_14	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0122645_14	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0122645_16	KOfam	K06905	NA	NA
UHGV-0122645_16	PHROG	phrog_400	tail protein	tail
UHGV-0122645_16	eggNOG-mapper	1002809.SSIL_1434	Late control gene D protein	NA
UHGV-0122645_16	COG	COG3500	NA	NA
UHGV-0122645_16	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0122645_17	PHROG	phrog_5184	NA	unknown function
UHGV-0122645_17	eggNOG-mapper	1285586.H131_21257	LysM domain	NA
UHGV-0122645_17	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0122645_17	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0122645_18	PHROG	phrog_8927	tail length tape measure protein	tail
UHGV-0122645_18	UniRef90	UniRef90_A0A268IEE7	TMP_3 domain-containing protein	NA
UHGV-0122645_18	eggNOG-mapper	1179226.AJXO01000005_gene1865	Phage tail tape measure protein	NA
UHGV-0122645_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0122645_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0122645_18	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0122645_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0122645_20	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0122645_20	UniRef90	UniRef90_A0A2P1RZI8	Phage portal protein	NA
UHGV-0122645_20	eggNOG-mapper	469617.FUAG_00844	NA	NA
UHGV-0122645_20	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0122645_21	PHROG	phrog_365	tail protein	tail
UHGV-0122645_21	UniRef90	UniRef90_UPI001C101F78	phage tail tube protein	NA
UHGV-0122645_21	eggNOG-mapper	1095747.HMPREF1049_2004	Phage tail tube protein	NA
UHGV-0122645_21	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0122645_21	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0122645_22	PHROG	phrog_1480	tail sheath	tail
UHGV-0122645_22	UniRef90	UniRef90_A0A841KX31	Phage_sheath_1C domain-containing protein	NA
UHGV-0122645_22	eggNOG-mapper	293826.Amet_2420	Phage tail sheath C-terminal domain	NA
UHGV-0122645_22	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0122645_22	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0122645_22	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0122645_23	PHROG	phrog_525	NA	unknown function
UHGV-0122645_23	eggNOG-mapper	1095747.HMPREF1049_2006	NA	NA
UHGV-0122645_23	Pfam	PF20765	NA	DUF6838
UHGV-0122645_23	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0122645_24	UniRef90	UniRef90_UPI0011A7607C	HK97 gp10 family phage protein	NA
UHGV-0122645_24	eggNOG-mapper	1095747.HMPREF1049_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0122645_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0122645_24	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0122645_25	PHROG	phrog_25	head closure Hc1	connector
UHGV-0122645_25	UniRef90	UniRef90_R6Q6F7	Phage head-tail adaptor	NA
UHGV-0122645_25	eggNOG-mapper	641107.CDLVIII_1341	Phage head-tail adaptor	NA
UHGV-0122645_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0122645_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0122645_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0122645_26	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0122645_26	UniRef90	UniRef90_UPI00195DB364	head-tail connector protein	NA
UHGV-0122645_26	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0122645_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0122645_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0122645_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0122645_27	UniRef90	UniRef90_A0A6B9SRA3	Major capsid protein	NA
UHGV-0122645_27	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0122645_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0122645_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0122645_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0122645_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0122645_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0122645_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0122645_28	UniRef90	UniRef90_UPI001ABB38AC	Clp protease ClpP	NA
UHGV-0122645_28	eggNOG-mapper	500633.CLOHIR_00366	Belongs to the peptidase S14 family	NA
UHGV-0122645_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0122645_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0122645_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0122645_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0122645_29	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0122645_29	eggNOG-mapper	1203606.HMPREF1526_00980	Portal protein	NA
UHGV-0122645_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0122645_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0122645_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0122645_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0122645_30	UniRef90	UniRef90_A0A5C0SI17	Terminase large subunit	NA
UHGV-0122645_30	eggNOG-mapper	1243664.CAVL020000054_gene3026	Terminase	NA
UHGV-0122645_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0122645_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0122645_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0122645_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0122645_31	PHROG	phrog_1066	NA	unknown function
UHGV-0122645_31	eggNOG-mapper	1196322.A370_05721	NA	NA
UHGV-0122645_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0122645_31	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0122645_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122645_32	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0122645_32	eggNOG-mapper	1111134.HMPREF1253_1193	NA	NA
UHGV-0122645_32	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0122645_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122645_33	eggNOG-mapper	936375.HMPREF1152_0670	NA	NA
UHGV-0122645_33	Structural annotation	PF21578	NA	NA