UHGV-0122647

Genome information

Genome length 47,201 bps

CDS count 71

Completeness 94.12% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122647
vOTU ID	vOTU-013617
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_336174
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.07
Jumbo phage	No

Genome content
Genome length	47,201 bps
GC content	36.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.06%
Average CDS length	602.32 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122647_1	PHROG	phrog_1607	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122647_1	Structural annotation	PF08804	NA	NA
UHGV-0122647_3	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0122647_3	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0122647_3	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0122647_3	eggNOG-mapper	1276257.SSABA_v1c03220	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0122647_3	PADLOC	drt-UG29	DRT	DRT
UHGV-0122647_3	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0122647_3	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0122647_3	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0122647_3	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0122647_5	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-0122647_7	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0122647_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122647_10	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0122647_10	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0122647_13	PHROG	phrog_1220	head protein	head and packaging
UHGV-0122647_13	eggNOG-mapper	536232.CLM_2920	NA	NA
UHGV-0122647_13	Structural annotation	PF20747	NA	NA
UHGV-0122647_14	PHROG	phrog_538	minor tail protein	tail
UHGV-0122647_14	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0122647_14	eggNOG-mapper	1034347.CAHJ01000045_gene552	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0122647_14	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0122647_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0122647_15	PHROG	phrog_36410	NA	unknown function
UHGV-0122647_15	UniRef90	UniRef90_UPI0004A58ADD	phage tail family protein	NA
UHGV-0122647_15	eggNOG-mapper	1033738.CAEP01000018_gene3683	Phage tail protein	NA
UHGV-0122647_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0122647_15	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0122647_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0122647_16	UniRef90	UniRef90_UPI0003B2F533	phage tail tape measure protein	NA
UHGV-0122647_16	eggNOG-mapper	1410670.JHXF01000015_gene2302	Phage tail tape measure protein, TP901 family	NA
UHGV-0122647_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0122647_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0122647_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0122647_16	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0122647_17	PHROG	phrog_6541	NA	unknown function
UHGV-0122647_18	PHROG	phrog_6280	NA	unknown function
UHGV-0122647_18	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-0122647_18	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0122647_19	PHROG	phrog_6686	tail tube protein	tail
UHGV-0122647_19	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0122647_19	eggNOG-mapper	748727.CLJU_c31250	NA	NA
UHGV-0122647_19	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0122647_20	PHROG	phrog_7585	NA	unknown function
UHGV-0122647_20	eggNOG-mapper	445335.CBN_3080	NA	NA
UHGV-0122647_20	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0122647_21	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0122647_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0122647_21	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0122647_22	PHROG	phrog_8435	NA	unknown function
UHGV-0122647_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0122647_23	PHROG	phrog_4020	NA	unknown function
UHGV-0122647_23	eggNOG-mapper	445335.CBN_3083	NA	NA
UHGV-0122647_24	Structural annotation	PF07498	NA	NA
UHGV-0122647_25	PHROG	phrog_29	major head protein	head and packaging
UHGV-0122647_25	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0122647_25	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0122647_25	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0122647_25	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0122647_26	PHROG	phrog_909	major head protein	head and packaging
UHGV-0122647_26	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-0122647_26	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-0122647_26	Structural annotation	PF02924	NA	NA
UHGV-0122647_27	eggNOG-mapper	1231057.AMGD01000018_gene3620	NA	NA
UHGV-0122647_27	Structural annotation	MF_02110	NA	NA
UHGV-0122647_29	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0122647_29	UniRef90	UniRef90_A0A2X2WBI1	Exonuclease SbcC	NA
UHGV-0122647_29	eggNOG-mapper	748727.CLJU_c31360	Portal protein	NA
UHGV-0122647_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0122647_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0122647_30	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-0122647_30	eggNOG-mapper	1211817.CCAT010000049_gene2492	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0122647_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0122647_31	KOfam	K07273	acm; lysozyme	NA
UHGV-0122647_31	PHROG	phrog_291	endolysin	lysis
UHGV-0122647_31	UniRef90	UniRef90_UPI00195EE7EA	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0122647_31	eggNOG-mapper	1123263.AUKY01000015_gene1625	lyzozyme M1	NA
UHGV-0122647_31	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0122647_31	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0122647_31	COG	COG1388	LysM repeat	NA
UHGV-0122647_32	PHROG	phrog_443	holin	lysis
UHGV-0122647_32	UniRef90	UniRef90_UPI000E5CA950	holin	NA
UHGV-0122647_32	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0122647_32	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0122647_32	Structural annotation	PF16945	NA	NA
UHGV-0122647_34	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0122647_35	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0122647_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122647_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0122647_37	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0122647_37	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0122647_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0122647_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0122647_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0122647_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122647_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0122647_41	PHROG	phrog_22292	NA	unknown function
UHGV-0122647_43	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0122647_43	eggNOG-mapper	1236514.BAKL01000015_gene1638	NA	NA
UHGV-0122647_43	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0122647_43	Structural annotation	PF20691, MF_00057, NF038299, COG1216	NA	NA
UHGV-0122647_44	eggNOG-mapper	1236514.BAKL01000015_gene1639	ParB-like nuclease domain	NA
UHGV-0122647_44	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0122647_45	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0122647_45	UniRef90	UniRef90_R7DB88	ParB-like protein	NA
UHGV-0122647_45	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-0122647_45	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0122647_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0122647_45	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0122647_46	PHROG	phrog_16126	NA	unknown function
UHGV-0122647_46	eggNOG-mapper	742740.HMPREF9474_02284	NA	NA
UHGV-0122647_48	PHROG	phrog_2412	NA	unknown function
UHGV-0122647_50	Structural annotation	PF14084	NA	NA
UHGV-0122647_51	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0122647_51	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0122647_51	UniRef90	UniRef90_A0A1M5KFY9	Ribonuclease H	NA
UHGV-0122647_51	eggNOG-mapper	1089553.Tph_c24630	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0122647_51	Pfam	PF00075	RNase H	RNase_H
UHGV-0122647_51	COG	COG0328	Ribonuclease HI	NA
UHGV-0122647_51	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0122647_52	Structural annotation	PF10922	NA	NA
UHGV-0122647_55	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0122647_56	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122647_56	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0122647_60	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0122647_60	UniRef90	UniRef90_A0A843GQD5	DNA_ligase_aden domain-containing protein	NA
UHGV-0122647_60	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-0122647_61	AcrCatalog	cluster_11486	NA	NA
UHGV-0122647_62	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-0122647_62	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0122647_62	UniRef90	UniRef90_A0A1W1UZM7	AAA domain (Dynein-related subfamily)	NA
UHGV-0122647_62	eggNOG-mapper	330395.Q30L55_9CAUD	ATPase activity	NA
UHGV-0122647_62	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0122647_62	Structural annotation	PF07728, MF_00016, TIGR01650, COG0714	NA	NA
UHGV-0122647_63	PHROG	phrog_1909	NA	unknown function
UHGV-0122647_63	eggNOG-mapper	1458697.W6E8E8_9CAUD	NA	NA
UHGV-0122647_64	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122647_64	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0122647_65	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0122647_65	PHROG	phrog_5696	NA	unknown function
UHGV-0122647_65	UniRef90	UniRef90_G5IHT0	N6_Mtase domain-containing protein	NA
UHGV-0122647_65	eggNOG-mapper	742733.HMPREF9469_05064	N-6 DNA Methylase	NA
UHGV-0122647_65	PADLOC	MTase_I_00012	Type I methyltransferase	RM
UHGV-0122647_65	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0122647_65	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0122647_65	Structural annotation	COG0286	NA	NA
UHGV-0122647_67	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0122647_67	UniRef90	UniRef90_A0A2J0N652	PDDEXK_1 domain-containing protein	NA
UHGV-0122647_67	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0122647_67	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0122647_68	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0122647_68	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0122647_68	UniRef90	UniRef90_UPI00195C3251	recombinase RecA	NA
UHGV-0122647_68	eggNOG-mapper	469616.FMAG_01147	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0122647_68	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0122647_68	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0122647_68	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0122647_70	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0122647_70	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0122647_70	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0122647_70	eggNOG-mapper	224324.aq_1008	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0122647_70	Pfam	PF02811	PHP domain	PHP
UHGV-0122647_70	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0122647_70	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0122647_70	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0122647_70	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0122647_70	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0122647_70	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0122647_71	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0122647_71	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0122647_71	UniRef90	UniRef90_A0A843GWB2	Type II methyltransferase	NA
UHGV-0122647_71	eggNOG-mapper	182217.HCW_02255	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0122647_71	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0122647_71	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0122647_71	COG	COG0863	DNA modification methylase	NA
UHGV-0122647_71	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA