UHGV-0122651

Genome information

vOTU vOTU-019989

Genome length 40,175 bps

CDS count 67

Completeness 85.67% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122651
vOTU ID	vOTU-019989
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_336067
BioSample	SAMN00791906
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.41
Jumbo phage	No

Genome content
Genome length	40,175 bps
GC content	44.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.35%
Average CDS length	558.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122651_1	eggNOG-mapper	742735.HMPREF9467_05203	NA	NA
UHGV-0122651_2	UniRef90	UniRef90_UPI001D032E3A	NA	NA
UHGV-0122651_2	eggNOG-mapper	657322.FPR_11180	NA	NA
UHGV-0122651_2	Pfam	PF13711	NA	DUF4160
UHGV-0122651_3	eggNOG-mapper	1124982.MSI_9430	NA	NA
UHGV-0122651_4	PHROG	phrog_16228	NA	unknown function
UHGV-0122651_4	UniRef90	UniRef90_A0A416L7T2	Uma2 family endonuclease	NA
UHGV-0122651_4	eggNOG-mapper	478749.BRYFOR_07230	Putative restriction endonuclease	NA
UHGV-0122651_4	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0122651_4	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0122651_4	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0122651_5	PHROG	phrog_7854	endolysin	lysis
UHGV-0122651_5	UniRef90	UniRef90_A0A3R6UY66	NA	NA
UHGV-0122651_5	eggNOG-mapper	1304866.K413DRAFT_4757	cell wall binding	NA
UHGV-0122651_5	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0122651_5	Pfam	PF16729	NA	DUF5067
UHGV-0122651_5	Structural annotation	PF11611, PF19127	NA	NA
UHGV-0122651_6	UniRef90	UniRef90_UPI00156FB8DD	NA	NA
UHGV-0122651_6	eggNOG-mapper	457412.RSAG_01052	NA	NA
UHGV-0122651_6	Pfam	PF13711	NA	DUF4160
UHGV-0122651_6	Structural annotation	PF13711	NA	NA
UHGV-0122651_7	eggNOG-mapper	457412.RSAG_01053	NA	NA
UHGV-0122651_8	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0122651_8	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0122651_8	UniRef90	UniRef90_UPI00082AF38C	XRE family transcriptional regulator	NA
UHGV-0122651_8	eggNOG-mapper	97139.C824_00060	Peptidase S24-like	NA
UHGV-0122651_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122651_8	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0122651_8	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0122651_8	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0122651_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122651_9	UniRef90	UniRef90_A0A8G1TI02	XRE family transcriptional regulator	NA
UHGV-0122651_9	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0122651_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122651_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0122651_11	PHROG	phrog_3634	NA	unknown function
UHGV-0122651_11	UniRef90	UniRef90_A0A8B2X5Y3	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0122651_11	eggNOG-mapper	86416.Clopa_0575	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0122651_11	PADLOC	Effector_00071	TIR	CBASS
UHGV-0122651_11	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0122651_11	Structural annotation	PF13676, MF_03036, TIGR03646, COG4916	NA	NA
UHGV-0122651_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122651_17	UniRef90	UniRef90_A0A412YTC0	Recombinase	NA
UHGV-0122651_17	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-0122651_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0122651_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0122651_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0122651_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0122651_18	PHROG	phrog_674	NA	unknown function
UHGV-0122651_18	UniRef90	UniRef90_A0A417UIF1	NA	NA
UHGV-0122651_18	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0122651_18	Pfam	PF07083	NA	DUF1351
UHGV-0122651_18	Structural annotation	PF07083	NA	NA
UHGV-0122651_19	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0122651_19	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122651_19	UniRef90	UniRef90_UPI0009D67E94	recombinase RecT	NA
UHGV-0122651_19	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0122651_19	Pfam	PF03837	RecT family	RecT
UHGV-0122651_19	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0122651_19	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0122651_19	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0122651_20	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0122651_20	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-0122651_20	eggNOG-mapper	1231336.L248_2133	NA	NA
UHGV-0122651_22	PHROG	phrog_1029	NA	unknown function
UHGV-0122651_22	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-0122651_22	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-0122651_22	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0122651_23	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122651_23	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0122651_24	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122651_24	UniRef90	UniRef90_UPI000462AB4A	NA	NA
UHGV-0122651_24	eggNOG-mapper	1196322.A370_04251	NA	NA
UHGV-0122651_24	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0122651_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0122651_24	Structural annotation	PF14297	NA	NA
UHGV-0122651_25	PHROG	phrog_15077	NA	unknown function
UHGV-0122651_25	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0122651_25	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0122651_25	Structural annotation	NF038070	NA	NA
UHGV-0122651_27	UniRef90	UniRef90_UPI00164D9662	helix-turn-helix domain-containing protein	NA
UHGV-0122651_27	Structural annotation	PF13384, COG1710	NA	NA
UHGV-0122651_28	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0122651_29	PHROG	phrog_15198	NA	unknown function
UHGV-0122651_29	UniRef90	UniRef90_A0A3R6QEJ7	NA	NA
UHGV-0122651_29	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0122651_29	Pfam	PF04448	NA	DUF551
UHGV-0122651_29	Structural annotation	NF041588	NA	NA
UHGV-0122651_33	eggNOG-mapper	742733.HMPREF9469_01832	Belongs to the 'phage' integrase family	NA
UHGV-0122651_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0122651_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0122651_34	UniRef90	UniRef90_A0A396NT11	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0122651_34	eggNOG-mapper	742733.HMPREF9469_01838	sulfate reduction	NA
UHGV-0122651_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0122651_34	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0122651_37	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-0122651_37	eggNOG-mapper	742733.HMPREF9469_02894	NA	NA
UHGV-0122651_37	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0122651_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122651_38	UniRef90	UniRef90_A0A417C341	RNA polymerase subunit sigma-70	NA
UHGV-0122651_38	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-0122651_38	Structural annotation	PF02996	NA	NA
UHGV-0122651_39	PHROG	phrog_5881	NA	unknown function
UHGV-0122651_39	Structural annotation	PF14524, TIGR04204	NA	NA
UHGV-0122651_42	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0122651_42	UniRef90	UniRef90_UPI0009D78BBE	phage terminase small subunit	NA
UHGV-0122651_42	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0122651_42	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0122651_42	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0122651_42	COG	COG5484	NA	NA
UHGV-0122651_42	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0122651_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122651_43	PHROG	phrog_10250	NA	unknown function
UHGV-0122651_43	UniRef90	UniRef90_A0A3A6KHT5	PBSX family phage terminase large subunit	NA
UHGV-0122651_43	eggNOG-mapper	1211817.CCAT010000003_gene241	phage terminase, large subunit, PBSX family	NA
UHGV-0122651_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0122651_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0122651_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122651_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0122651_44	KOfam	K09961	NA	NA
UHGV-0122651_44	PHROG	phrog_146	portal protein	head and packaging
UHGV-0122651_44	UniRef90	UniRef90_A0A373CTT3	NA	NA
UHGV-0122651_44	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0122651_44	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0122651_44	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0122651_44	COG	COG3567	NA	NA
UHGV-0122651_44	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0122651_45	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0122651_45	UniRef90	UniRef90_A0A416C0J8	Minor capsid protein	NA
UHGV-0122651_45	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-0122651_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0122651_45	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0122651_45	Structural annotation	PF06152	NA	NA
UHGV-0122651_46	PHROG	phrog_35328	NA	unknown function
UHGV-0122651_47	KOfam	K09960	NA	NA
UHGV-0122651_47	PHROG	phrog_16985	NA	unknown function
UHGV-0122651_47	UniRef90	UniRef90_A0A3R6PR76	NA	NA
UHGV-0122651_47	eggNOG-mapper	1196322.A370_02033	NA	NA
UHGV-0122651_47	Pfam	PF09979	NA	DUF2213
UHGV-0122651_47	COG	COG3566	NA	NA
UHGV-0122651_47	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0122651_48	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0122651_48	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-0122651_48	eggNOG-mapper	742738.HMPREF9460_02514	NA	NA
UHGV-0122651_48	Structural annotation	PF09956	NA	NA
UHGV-0122651_49	PHROG	phrog_264	major head protein	head and packaging
UHGV-0122651_49	UniRef90	UniRef90_A0A3A6KBH3	NA	NA
UHGV-0122651_49	eggNOG-mapper	742738.HMPREF9460_02515	NA	NA
UHGV-0122651_49	Pfam	PF09950	NA	DUF2184
UHGV-0122651_49	COG	COG4834	NA	NA
UHGV-0122651_49	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0122651_51	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0122651_51	UniRef90	UniRef90_A0A373CYF1	NA	NA
UHGV-0122651_51	eggNOG-mapper	742738.HMPREF9460_02517	NA	NA
UHGV-0122651_51	Pfam	PF13262	NA	DUF4054
UHGV-0122651_51	Structural annotation	PF13262	NA	NA
UHGV-0122651_52	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0122651_52	eggNOG-mapper	1089548.KI783301_gene2613	NA	NA
UHGV-0122651_52	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0122651_53	UniRef90	UniRef90_A0A373CZD5	HK97 gp10 family phage protein	NA
UHGV-0122651_53	eggNOG-mapper	398512.JQKC01000053_gene2530	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0122651_53	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0122651_54	PHROG	phrog_525	NA	unknown function
UHGV-0122651_54	eggNOG-mapper	526218.Sterm_1435	NA	NA
UHGV-0122651_54	Pfam	PF20765	NA	DUF6838
UHGV-0122651_54	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0122651_56	PHROG	phrog_279	tail sheath	tail
UHGV-0122651_56	UniRef90	UniRef90_A0A373CW72	Phage tail sheath protein	NA
UHGV-0122651_56	eggNOG-mapper	1163671.JAGI01000002_gene3054	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0122651_56	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0122651_56	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0122651_56	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0122651_56	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0122651_57	PHROG	phrog_365	tail protein	tail
UHGV-0122651_57	UniRef90	UniRef90_A0A1C5M0P8	Phage-like element PBSX protein xkdM	NA
UHGV-0122651_57	eggNOG-mapper	1163671.JAGI01000002_gene3053	Phage tail tube protein	NA
UHGV-0122651_57	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0122651_57	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0122651_58	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0122651_58	UniRef90	UniRef90_A0A354IBX8	Phage portal protein	NA
UHGV-0122651_58	eggNOG-mapper	1121335.Clst_0400	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0122651_58	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0122651_58	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0122651_59	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0122651_59	UniRef90	UniRef90_A0A373CU39	TMP_3 domain-containing protein	NA
UHGV-0122651_59	eggNOG-mapper	1163671.JAGI01000002_gene3050	tape measure	NA
UHGV-0122651_59	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0122651_59	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0122651_59	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0122651_59	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0122651_60	PHROG	phrog_380	endolysin	lysis
UHGV-0122651_60	UniRef90	UniRef90_UPI00082A614A	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0122651_60	eggNOG-mapper	1163671.JAGI01000002_gene3049	positive regulation of growth rate	NA
UHGV-0122651_60	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0122651_60	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-0122651_61	PHROG	phrog_400	tail protein	tail
UHGV-0122651_61	eggNOG-mapper	1163671.JAGI01000002_gene3048	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0122651_61	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0122651_61	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0122651_62	PHROG	phrog_579	NA	unknown function
UHGV-0122651_62	UniRef90	UniRef90_A0A3A6KHR6	NA	NA
UHGV-0122651_62	eggNOG-mapper	1430331.EP10_10430	NA	NA
UHGV-0122651_62	Pfam	PF10844	NA	DUF2577
UHGV-0122651_62	Structural annotation	PF10844	NA	NA
UHGV-0122651_63	PHROG	phrog_120	baseplate protein	tail
UHGV-0122651_63	UniRef90	UniRef90_A0A415VN80	NA	NA
UHGV-0122651_63	eggNOG-mapper	1163671.JAGI01000002_gene3046	NA	NA
UHGV-0122651_63	Pfam	PF10934	NA	DUF2634
UHGV-0122651_63	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0122651_63	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0122651_64	PHROG	phrog_6	baseplate protein	tail
UHGV-0122651_64	UniRef90	UniRef90_A0A373CW25	Baseplate J/gp47 family protein	NA
UHGV-0122651_64	eggNOG-mapper	1163671.JAGI01000002_gene3045	Baseplate J-like protein	NA
UHGV-0122651_64	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0122651_64	COG	COG3299	NA	NA
UHGV-0122651_64	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0122651_65	PHROG	phrog_521	tail protein	tail
UHGV-0122651_65	UniRef90	UniRef90_A0A3A6KBL8	NA	NA
UHGV-0122651_65	eggNOG-mapper	1163671.JAGI01000002_gene3044	NA	NA
UHGV-0122651_65	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0122651_65	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0122651_65	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0122651_66	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0122651_66	UniRef90	UniRef90_UPI00115BCF4F	phage tail protein	NA
UHGV-0122651_66	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-0122651_66	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0122651_66	Structural annotation	PF12571, COG5301	NA	NA