UHGV-0122775

Genome information

Genome length 31,025 bps

CDS count 59

Completeness 84.78% (medium-quality)

geNomad score 0.9579

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122775
vOTU ID	vOTU-033556
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_322116
BioSample	SAMN00791915
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9579
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.71
Jumbo phage	No

Genome content
Genome length	31,025 bps
GC content	33.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.01%
Average CDS length	480.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122775_2	eggNOG-mapper	1280681.AUJZ01000019_gene1752	NA	NA
UHGV-0122775_4	UniRef90	UniRef90_UPI00156D410B	helix-turn-helix domain-containing protein	NA
UHGV-0122775_4	eggNOG-mapper	1232446.BAIE02000010_gene1963	NA	NA
UHGV-0122775_4	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0122775_4	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0122775_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0122775_7	PHROG	phrog_435	endolysin	lysis
UHGV-0122775_7	UniRef90	UniRef90_UPI001D075068	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0122775_7	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0122775_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0122775_7	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0122775_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0122775_7	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0122775_8	PHROG	phrog_4105	NA	unknown function
UHGV-0122775_8	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0122775_9	PHROG	phrog_1129	holin	lysis
UHGV-0122775_9	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-0122775_9	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0122775_9	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0122775_9	Structural annotation	PF06946	NA	NA
UHGV-0122775_13	eggNOG-mapper	1280698.AUJS01000007_gene1056	NA	NA
UHGV-0122775_13	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-0122775_14	PHROG	phrog_32322	NA	unknown function
UHGV-0122775_14	UniRef90	UniRef90_G9R126	Ig-like_bact domain-containing protein	NA
UHGV-0122775_14	eggNOG-mapper	1232446.BAIE02000011_gene1581	NA	NA
UHGV-0122775_14	Pfam	PF13754	NA	Big_3_4
UHGV-0122775_14	Structural annotation	PF13754	NA	NA
UHGV-0122775_15	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0122775_15	PHROG	phrog_11157	NA	unknown function
UHGV-0122775_15	UniRef90	UniRef90_G9R125	Big_13 domain-containing protein	NA
UHGV-0122775_15	eggNOG-mapper	1232446.BAIE02000011_gene1582	NA	NA
UHGV-0122775_15	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0122775_15	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0122775_15	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0122775_16	PHROG	phrog_13141	NA	unknown function
UHGV-0122775_16	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0122775_16	eggNOG-mapper	552396.HMPREF0863_00266	NA	NA
UHGV-0122775_16	Structural annotation	PF20747	NA	NA
UHGV-0122775_17	PHROG	phrog_538	minor tail protein	tail
UHGV-0122775_17	UniRef90	UniRef90_UPI001D08549E	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0122775_17	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-0122775_17	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0122775_17	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0122775_18	eggNOG-mapper	1232446.BAIE02000011_gene1585	NA	NA
UHGV-0122775_18	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0122775_19	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0122775_19	UniRef90	UniRef90_G9R121	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0122775_19	eggNOG-mapper	665956.HMPREF1032_00108	Phage tail tape measure protein, TP901 family	NA
UHGV-0122775_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0122775_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0122775_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0122775_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0122775_22	PHROG	phrog_88	major tail protein	tail
UHGV-0122775_22	UniRef90	UniRef90_G9R119	Phi13 family phage major tail protein	NA
UHGV-0122775_22	eggNOG-mapper	543734.LCABL_11170	NA	NA
UHGV-0122775_22	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0122775_22	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0122775_23	UniRef90	UniRef90_R7FK52	Phage protein HK97 gp10 family	NA
UHGV-0122775_23	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0122775_24	Structural annotation	PF05657	NA	NA
UHGV-0122775_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0122775_26	PHROG	phrog_749	NA	unknown function
UHGV-0122775_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0122775_27	UniRef90	UniRef90_A0A3E3JY53	Phage major capsid protein	NA
UHGV-0122775_27	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0122775_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0122775_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0122775_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0122775_27	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0122775_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0122775_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0122775_28	UniRef90	UniRef90_G9R113	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0122775_28	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0122775_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0122775_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0122775_28	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0122775_29	UniRef90	UniRef90_G9R112	HK97 family phage portal protein	NA
UHGV-0122775_29	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0122775_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0122775_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0122775_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0122775_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0122775_30	UniRef90	UniRef90_A0A1Q6MQJ0	Terminase	NA
UHGV-0122775_30	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0122775_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0122775_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0122775_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0122775_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0122775_31	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0122775_31	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0122775_31	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0122775_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0122775_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0122775_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0122775_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122775_32	UniRef90	UniRef90_A0A7I8DXT8	HNHc domain-containing protein	NA
UHGV-0122775_32	eggNOG-mapper	525378.HMPREF0793_1869	HNH nucleases	NA
UHGV-0122775_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0122775_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0122775_34	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0122775_36	PHROG	phrog_1828	NA	unknown function
UHGV-0122775_36	eggNOG-mapper	1450694.BTS2_0549	NA	NA
UHGV-0122775_38	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0122775_38	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0122775_38	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-0122775_38	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0122775_38	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0122775_38	COG	COG0305	Replicative DNA helicase	NA
UHGV-0122775_38	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0122775_39	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122775_39	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-0122775_39	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0122775_39	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0122775_40	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0122775_40	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0122775_40	eggNOG-mapper	1232446.BAIE02000002_gene815	NA	NA
UHGV-0122775_40	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0122775_42	Structural annotation	PF18300, MF_00085, NF003076	NA	NA
UHGV-0122775_44	eggNOG-mapper	1232446.BAIE02000002_gene811	NA	NA
UHGV-0122775_49	PHROG	phrog_5051	NA	unknown function
UHGV-0122775_51	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0122775_51	PHROG	phrog_216	integrase	integration and excision
UHGV-0122775_51	UniRef90	UniRef90_G9R0Z2	Tyr recombinase domain-containing protein	NA
UHGV-0122775_51	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0122775_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122775_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0122775_51	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0122775_52	PHROG	phrog_3634	NA	unknown function
UHGV-0122775_52	UniRef90	UniRef90_A0A3E3AEX0	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0122775_52	eggNOG-mapper	1232446.BAIE02000002_gene804	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0122775_52	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0122775_52	Structural annotation	PF13676, MF_03036, TIGR03646, COG4916	NA	NA
UHGV-0122775_56	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122775_56	UniRef90	UniRef90_G9R0Z0	HNHc domain-containing protein	NA
UHGV-0122775_56	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-0122775_56	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0122775_56	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0122775_58	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0122775_58	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0122775_58	UniRef90	UniRef90_UPI001F38E41B	site-specific DNA-methyltransferase	NA
UHGV-0122775_58	eggNOG-mapper	910314.HMPREF9220_0636	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0122775_58	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0122775_58	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0122775_58	COG	COG0863	DNA modification methylase	NA
UHGV-0122775_59	UniRef90	UniRef90_UPI000E4FA7A6	site-specific DNA-methyltransferase	NA
UHGV-0122775_59	eggNOG-mapper	457405.FSDG_01570	DNA methylase	NA
UHGV-0122775_59	COG	COG0863	DNA modification methylase	NA
UHGV-0122775_59	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA