UHGV-0122812

Genome information

Genome length 45,268 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122812
vOTU ID	vOTU-010554
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_312546
BioSample	SAMEA37094668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.27
Jumbo phage	No

Genome content
Genome length	45,268 bps
GC content	48.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.70%
Average CDS length	705.41 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122812_1	eggNOG-mapper	469610.HMPREF0189_01216	NA	NA
UHGV-0122812_2	eggNOG-mapper	469610.HMPREF0189_01215	NA	NA
UHGV-0122812_3	eggNOG-mapper	469610.HMPREF0189_01213	NA	NA
UHGV-0122812_4	UniRef90	UniRef90_UPI001CF35204	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0122812_4	eggNOG-mapper	469610.HMPREF0189_02290	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0122812_4	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0122812_4	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0122812_6	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0122812_6	PHROG	phrog_7	endolysin	lysis
UHGV-0122812_6	UniRef90	UniRef90_A0A5B3FP35	Lysozyme	NA
UHGV-0122812_6	eggNOG-mapper	469610.HMPREF0189_02350	Phage lysozyme	NA
UHGV-0122812_6	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0122812_6	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0122812_6	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0122812_7	PHROG	phrog_199	holin	lysis
UHGV-0122812_7	UniRef90	UniRef90_UPI0012BCAC2D	phage holin family protein	NA
UHGV-0122812_7	eggNOG-mapper	762966.HMPREF9439_01063	Bacteriophage holin family	NA
UHGV-0122812_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0122812_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0122812_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0122812_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0122812_8	eggNOG-mapper	469610.HMPREF0189_02346	NA	NA
UHGV-0122812_8	Structural annotation	PF17065	NA	NA
UHGV-0122812_9	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0122812_9	UniRef90	UniRef90_UPI001F4F2EB0	phage tail assembly chaperone	NA
UHGV-0122812_9	eggNOG-mapper	762966.HMPREF9439_01057	Phage tail assembly chaperone protein	NA
UHGV-0122812_9	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0122812_9	Structural annotation	PF16778	NA	NA
UHGV-0122812_10	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0122812_10	eggNOG-mapper	563192.HMPREF0179_03429	domain, Protein	NA
UHGV-0122812_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0122812_10	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0122812_11	KOfam	K03988	C1QG; complement C1q subcomponent subunit C	NA
UHGV-0122812_11	PHROG	phrog_1640	tail protein	tail
UHGV-0122812_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0122812_11	Structural annotation	PF03906	NA	NA
UHGV-0122812_12	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-0122812_12	UniRef90	UniRef90_A0A6P2EJ50	Structural protein	NA
UHGV-0122812_12	eggNOG-mapper	1157708.KB907450_gene5438	NA	NA
UHGV-0122812_13	PHROG	phrog_9880	NA	unknown function
UHGV-0122812_13	eggNOG-mapper	645512.GCWU000246_01757	NA	NA
UHGV-0122812_13	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0122812_13	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0122812_14	PHROG	phrog_873	endolysin	head and packaging
UHGV-0122812_14	eggNOG-mapper	1380394.JADL01000008_gene3752	NA	NA
UHGV-0122812_14	Structural annotation	MF_04122	NA	NA
UHGV-0122812_15	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0122812_15	UniRef90	UniRef90_A0A6F8VD79	NA	NA
UHGV-0122812_15	eggNOG-mapper	557598.LHK_01551	NA	NA
UHGV-0122812_15	Structural annotation	PF12083	NA	NA
UHGV-0122812_16	PHROG	phrog_376	tail protein	tail
UHGV-0122812_16	UniRef90	UniRef90_A0A6F8VDG3	NA	NA
UHGV-0122812_16	eggNOG-mapper	557598.LHK_01546	NA	NA
UHGV-0122812_16	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0122812_17	PHROG	phrog_394	tail protein	tail
UHGV-0122812_17	eggNOG-mapper	557598.LHK_01545	NA	NA
UHGV-0122812_17	Structural annotation	PF17212	NA	NA
UHGV-0122812_18	PHROG	phrog_427	NA	unknown function
UHGV-0122812_18	UniRef90	UniRef90_Q775C8	Bbp16	NA
UHGV-0122812_18	eggNOG-mapper	194699.Q775C8_BPBPP	NA	NA
UHGV-0122812_18	Pfam	PF21190	Bbp16	Bbp16
UHGV-0122812_18	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0122812_19	PHROG	phrog_212	major head protein	head and packaging
UHGV-0122812_19	UniRef90	UniRef90_Q775C7	Bbp17	NA
UHGV-0122812_19	eggNOG-mapper	194699.Q775C7_BPBPP	viral capsid	NA
UHGV-0122812_19	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0122812_19	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0122812_20	PHROG	phrog_458	protease	other
UHGV-0122812_20	UniRef90	UniRef90_UPI0013EFD20D	protease	NA
UHGV-0122812_20	eggNOG-mapper	557598.LHK_01541	NA	NA
UHGV-0122812_21	PHROG	phrog_528	NA	unknown function
UHGV-0122812_22	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0122812_22	UniRef90	UniRef90_UPI0012BC467D	portal protein	NA
UHGV-0122812_22	eggNOG-mapper	194699.PORTL_BPBPP	Bacteriophage head to tail connecting protein	NA
UHGV-0122812_22	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0122812_22	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0122812_24	UniRef90	UniRef90_UPI0012BC2332	GNAT family N-acetyltransferase	NA
UHGV-0122812_24	eggNOG-mapper	1072685.IX83_07115	Acetyltransferase (GNAT) family	NA
UHGV-0122812_24	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0122812_24	COG	COG3375	Predicted acetyltransferase, GNAT superfamily	NA
UHGV-0122812_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122812_25	PHROG	phrog_5902	NA	unknown function
UHGV-0122812_25	UniRef90	UniRef90_UPI0012BCF9F6	terminase	NA
UHGV-0122812_25	eggNOG-mapper	665942.HMPREF1022_00139	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0122812_25	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0122812_25	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0122812_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0122812_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0122812_26	UniRef90	UniRef90_UPI0012BCC981	terminase small subunit	NA
UHGV-0122812_26	eggNOG-mapper	1095747.HMPREF1049_1836	Terminase small subunit	NA
UHGV-0122812_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0122812_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0122812_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0122812_27	Structural annotation	PF04218	NA	NA
UHGV-0122812_28	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122812_28	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0122812_29	eggNOG-mapper	762966.HMPREF9439_01020	NA	NA
UHGV-0122812_30	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0122812_30	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0122812_30	UniRef90	UniRef90_R5E5D4	DNA replication protein DnaC	NA
UHGV-0122812_30	eggNOG-mapper	469610.HMPREF0189_01096	IstB-like ATP binding protein	NA
UHGV-0122812_30	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0122812_30	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0122812_30	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0122812_31	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122812_31	eggNOG-mapper	469610.HMPREF0189_01095	NA	NA
UHGV-0122812_31	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0122812_31	Structural annotation	PF07106, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-0122812_33	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0122812_33	UniRef90	UniRef90_UPI001B8BEFB7	Cro/CI family transcriptional regulator	NA
UHGV-0122812_33	eggNOG-mapper	1038866.KB902768_gene5297	Nitrate reductase delta subunit	NA
UHGV-0122812_33	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0122812_33	COG	COG3381	Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation	NA
UHGV-0122812_33	Structural annotation	PF15943, NF041951, COG4197	NA	NA
UHGV-0122812_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0122812_34	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0122812_34	UniRef90	UniRef90_UPI0006D77E25	LexA family transcriptional regulator	NA
UHGV-0122812_34	eggNOG-mapper	1121921.KB898706_gene3022	Peptidase S24-like	NA
UHGV-0122812_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122812_34	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0122812_34	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0122812_34	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0122812_35	UniRef90	UniRef90_UPI001C3E8E16	restriction endonuclease	NA
UHGV-0122812_35	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0122812_35	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0122812_35	Structural annotation	PF04471, MF_00722, NF002876, COG1787	NA	NA
UHGV-0122812_39	UniRef90	UniRef90_A0A3D3SJ30	Transcriptional regulator	NA
UHGV-0122812_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122812_42	UniRef90	UniRef90_A0A6J5P0M3	Essential recombination function protein	NA
UHGV-0122812_42	eggNOG-mapper	1207076.ALAT01000105_gene1941	ERF superfamily	NA
UHGV-0122812_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0122812_42	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0122812_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0122812_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122812_43	UniRef90	UniRef90_F3QNN6	Single-stranded DNA-binding protein	NA
UHGV-0122812_43	eggNOG-mapper	469610.HMPREF0189_01394	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0122812_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0122812_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0122812_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0122812_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0122812_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0122812_44	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0122812_44	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0122812_44	eggNOG-mapper	742823.HMPREF9465_00905	Siphovirus Gp157	NA
UHGV-0122812_44	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0122812_44	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0122812_48	eggNOG-mapper	762966.HMPREF9439_00996	NA	NA
UHGV-0122812_49	eggNOG-mapper	762966.HMPREF9439_00996	NA	NA
UHGV-0122812_50	eggNOG-mapper	469610.HMPREF0189_01154	NA	NA
UHGV-0122812_51	PHROG	phrog_2164	NA	unknown function
UHGV-0122812_51	eggNOG-mapper	1158609.I586_00053	NA	NA
UHGV-0122812_52	UniRef90	UniRef90_A0A5B3FNV2	KTSC domain-containing protein	NA
UHGV-0122812_52	Structural annotation	PF13619	NA	NA
UHGV-0122812_53	UniRef90	UniRef90_F3QJA9	Toxin-antitoxin system, toxin component, Fic family	NA
UHGV-0122812_53	eggNOG-mapper	762966.HMPREF9439_01010	Virulence protein RhuM family	NA
UHGV-0122812_53	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0122812_53	COG	COG3943	NA	NA
UHGV-0122812_53	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0122812_55	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0122812_56	eggNOG-mapper	762966.HMPREF9439_00980	NA	NA
UHGV-0122812_56	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0122812_57	KOfam	K14059	int; integrase	NA
UHGV-0122812_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0122812_57	UniRef90	UniRef90_F3QJ78	Site-specific recombinase, phage integrase family	NA
UHGV-0122812_57	eggNOG-mapper	762966.HMPREF9439_00979	Belongs to the 'phage' integrase family	NA
UHGV-0122812_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0122812_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0122812_57	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0122812_58	KOfam	K07101	NA	NA
UHGV-0122812_58	UniRef90	UniRef90_A0A6L6YGX2	Phosphoribosyltransferase	NA
UHGV-0122812_58	eggNOG-mapper	469610.HMPREF0189_01145	Phosphoribosyl transferase domain	NA
UHGV-0122812_58	Pfam	PF00156	Phosphoribosyl transferase domain	Pribosyltran
UHGV-0122812_58	COG	COG2236	Hypoxanthine phosphoribosyltransferase	NA