UHGV-0123013

Genome information

Genome length 41,460 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123013
vOTU ID	vOTU-059765
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_326282
BioSample	SAMN00791918
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	35
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	76.35
Jumbo phage	No

Genome content
Genome length	41,460 bps
GC content	34.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.13%
Average CDS length	604.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123013_1	PHROG	phrog_30113	NA	unknown function
UHGV-0123013_1	UniRef90	UniRef90_A0A8A4UWE5	NA	NA
UHGV-0123013_1	eggNOG-mapper	1423790.BN53_01020	NA	NA
UHGV-0123013_1	Pfam	PF12686	NA	DUF3800
UHGV-0123013_1	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-0123013_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0123013_2	PHROG	phrog_291	endolysin	lysis
UHGV-0123013_2	UniRef90	UniRef90_A0A4R6CS37	Glycoside hydrolase family 25	NA
UHGV-0123013_2	eggNOG-mapper	139871.Q9AZ81_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0123013_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0123013_2	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA
UHGV-0123013_4	PHROG	phrog_4325	holin	lysis
UHGV-0123013_4	eggNOG-mapper	891391.LAC30SC_06470	NA	NA
UHGV-0123013_4	Structural annotation	PF14248, COG2259	NA	NA
UHGV-0123013_5	PHROG	phrog_134	NA	unknown function
UHGV-0123013_6	PHROG	phrog_8791	NA	unknown function
UHGV-0123013_7	UniRef90	UniRef90_U6F3B7	Structural protein	NA
UHGV-0123013_7	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0123013_7	Structural annotation	PF19789	NA	NA
UHGV-0123013_8	eggNOG-mapper	1423758.BN55_00095	NA	NA
UHGV-0123013_9	PHROG	phrog_521	tail protein	tail
UHGV-0123013_9	UniRef90	UniRef90_A0A6A7K0U5	NA	NA
UHGV-0123013_9	eggNOG-mapper	326425.lhe_1197	NA	NA
UHGV-0123013_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0123013_9	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0123013_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0123013_10	UniRef90	UniRef90_A0A1Y4TYF3	Baseplate_J domain-containing protein	NA
UHGV-0123013_10	eggNOG-mapper	1206110.L0P7C2_9CAUD	Baseplate J-like protein	NA
UHGV-0123013_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0123013_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0123013_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0123013_11	UniRef90	UniRef90_L0P6H1	NA	NA
UHGV-0123013_11	eggNOG-mapper	326425.lhe_1199	NA	NA
UHGV-0123013_11	Pfam	PF10934	NA	DUF2634
UHGV-0123013_11	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0123013_11	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0123013_12	PHROG	phrog_579	NA	unknown function
UHGV-0123013_12	UniRef90	UniRef90_UPI000BEEFBAC	NA	NA
UHGV-0123013_12	eggNOG-mapper	97137.C821_00702	NA	NA
UHGV-0123013_12	Pfam	PF10844	NA	DUF2577
UHGV-0123013_12	Structural annotation	PF10844, MF_00216, TIGR00008	NA	NA
UHGV-0123013_13	KOfam	K06905	NA	NA
UHGV-0123013_13	PHROG	phrog_400	tail protein	tail
UHGV-0123013_13	UniRef90	UniRef90_L0P6D8	Phage late control gene D protein GPD	NA
UHGV-0123013_13	eggNOG-mapper	326425.lhe_1201	domain, Protein	NA
UHGV-0123013_13	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0123013_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0123013_14	PHROG	phrog_380	endolysin	lysis
UHGV-0123013_14	UniRef90	UniRef90_I7LD81	Putative LysM-like protein	NA
UHGV-0123013_14	eggNOG-mapper	326425.lhe_1202	protein containing LysM domain	NA
UHGV-0123013_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0123013_14	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-0123013_15	PHROG	phrog_1204	tail protein	tail
UHGV-0123013_15	UniRef90	UniRef90_A0A1Y4U0V0	TMP_3 domain-containing protein	NA
UHGV-0123013_15	eggNOG-mapper	326425.lhe_1203	phage tail tape measure protein	NA
UHGV-0123013_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0123013_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0123013_15	COG	COG5412	Phage-related protein	NA
UHGV-0123013_15	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0123013_16	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0123013_16	UniRef90	UniRef90_L0P6Y3	Phage XkdN-like protein	NA
UHGV-0123013_16	eggNOG-mapper	326425.lhe_1204	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0123013_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0123013_16	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0123013_17	PHROG	phrog_365	tail protein	tail
UHGV-0123013_17	UniRef90	UniRef90_A0A0R1U9R5	Sheath tail protein	NA
UHGV-0123013_17	eggNOG-mapper	326425.lhe_1205	Phage tail tube protein	NA
UHGV-0123013_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0123013_17	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0123013_18	PHROG	phrog_279	tail sheath	tail
UHGV-0123013_18	UniRef90	UniRef90_A0A2M9WND4	Phage tail protein	NA
UHGV-0123013_18	eggNOG-mapper	326425.lhe_1206	Phage tail sheath C-terminal domain	NA
UHGV-0123013_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0123013_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0123013_18	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0123013_19	PHROG	phrog_966	NA	unknown function
UHGV-0123013_19	eggNOG-mapper	97137.C821_00693	NA	NA
UHGV-0123013_20	PHROG	phrog_525	NA	unknown function
UHGV-0123013_20	eggNOG-mapper	1423754.BALY01000011_gene281	NA	NA
UHGV-0123013_20	Pfam	PF20765	NA	DUF6838
UHGV-0123013_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0123013_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0123013_21	UniRef90	UniRef90_A0A346MRJ2	HK97 gp10 family phage protein	NA
UHGV-0123013_21	eggNOG-mapper	326425.lhe_1208	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0123013_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0123013_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0123013_22	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0123013_22	UniRef90	UniRef90_A0A0F4LCZ2	Phage related protein	NA
UHGV-0123013_22	eggNOG-mapper	326425.lhe_1209	NA	NA
UHGV-0123013_22	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0123013_23	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0123013_23	eggNOG-mapper	326425.lhe_1210	NA	NA
UHGV-0123013_23	Structural annotation	PF05135	NA	NA
UHGV-0123013_24	PHROG	phrog_422	major head protein	head and packaging
UHGV-0123013_24	UniRef90	UniRef90_A0A0R1H9P0	Phage major capsid protein	NA
UHGV-0123013_24	eggNOG-mapper	326425.lhe_1211	NA	NA
UHGV-0123013_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0123013_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0123013_25	UniRef90	UniRef90_UPI0015EB926A	phage scaffolding protein	NA
UHGV-0123013_25	eggNOG-mapper	97137.C821_00687	Phage minor structural protein GP20	NA
UHGV-0123013_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0123013_25	Structural annotation	PF06810	NA	NA
UHGV-0123013_27	PHROG	phrog_3675	NA	unknown function
UHGV-0123013_27	UniRef90	UniRef90_I7K070	YjcQ protein	NA
UHGV-0123013_27	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-0123013_27	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0123013_27	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0123013_28	PHROG	phrog_27123	NA	unknown function
UHGV-0123013_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0123013_29	UniRef90	UniRef90_I7J255	Putative phage head protein	NA
UHGV-0123013_29	eggNOG-mapper	326425.lhe_1213	Phage Mu protein F like protein	NA
UHGV-0123013_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0123013_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0123013_29	COG	COG2369	NA	NA
UHGV-0123013_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0123013_30	UniRef90	UniRef90_UPI0015EC15DB	phage portal protein	NA
UHGV-0123013_30	eggNOG-mapper	97137.C821_00681	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0123013_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0123013_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0123013_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0123013_31	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0123013_31	UniRef90	UniRef90_A0A0P0EEZ6	Terminase	NA
UHGV-0123013_31	eggNOG-mapper	326425.lhe_1215	Terminase-like family	NA
UHGV-0123013_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0123013_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0123013_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0123013_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0123013_32	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-0123013_32	UniRef90	UniRef90_A0A3G6JNU1	Helix-turn-helix domain-containing protein	NA
UHGV-0123013_32	eggNOG-mapper	97137.C821_00678	NA	NA
UHGV-0123013_32	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0123013_32	Structural annotation	PF13022	NA	NA
UHGV-0123013_33	PHROG	phrog_33766	SieB superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0123013_33	UniRef90	UniRef90_UPI001CBAB150	terminase	NA
UHGV-0123013_33	eggNOG-mapper	257314.LJ_1442	Super-infection exclusion protein B	NA
UHGV-0123013_33	Pfam	PF14163	Super-infection exclusion protein B	SieB
UHGV-0123013_34	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0123013_34	UniRef90	UniRef90_A0A0R2D2J7	NA	NA
UHGV-0123013_34	eggNOG-mapper	1423754.BALY01000011_gene295	Phage transcriptional regulator, ArpU family	NA
UHGV-0123013_34	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0123013_34	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0123013_35	PHROG	phrog_11108	NA	unknown function
UHGV-0123013_35	eggNOG-mapper	326425.lhe_1218	NA	NA
UHGV-0123013_35	Structural annotation	PF13384, NF040595	NA	NA
UHGV-0123013_36	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0123013_36	UniRef90	UniRef90_UPI000BEEEAAC	VRR-NUC domain-containing protein	NA
UHGV-0123013_36	eggNOG-mapper	97137.C821_00673	VRR-NUC domain	NA
UHGV-0123013_36	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0123013_36	Structural annotation	PF03838, MF_04160, NF002583	NA	NA
UHGV-0123013_37	eggNOG-mapper	97137.C821_00672	NA	NA
UHGV-0123013_40	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0123013_40	UniRef90	UniRef90_UPI0007EFF8F9	virulence-associated E family protein	NA
UHGV-0123013_40	eggNOG-mapper	97137.C821_00665	Virulence-associated protein E	NA
UHGV-0123013_40	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0123013_40	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0123013_40	Structural annotation	PF05272, MF_04000, NF011296, COG5545	NA	NA
UHGV-0123013_43	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0123013_43	UniRef90	UniRef90_UPI001565ED1D	bifunctional DNA primase/polymerase	NA
UHGV-0123013_43	eggNOG-mapper	97137.C821_00664	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0123013_43	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0123013_43	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0123013_43	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0123013_43	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-0123013_44	eggNOG-mapper	326425.lhe_1227	NA	NA
UHGV-0123013_45	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0123013_45	UniRef90	UniRef90_A0A809KBQ9	Single-stranded DNA-binding protein	NA
UHGV-0123013_45	eggNOG-mapper	326425.lhe_1228	NA	NA
UHGV-0123013_45	Structural annotation	PF05037	NA	NA
UHGV-0123013_46	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0123013_46	UniRef90	UniRef90_UPI001F16A523	ATP-binding protein	NA
UHGV-0123013_46	eggNOG-mapper	97137.C821_00661	AAA domain	NA
UHGV-0123013_46	Pfam	PF13479	AAA domain	AAA_24
UHGV-0123013_46	COG	COG2887	RecB family exonuclease	NA
UHGV-0123013_46	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0123013_47	PHROG	phrog_13248	NA	unknown function
UHGV-0123013_47	UniRef90	UniRef90_UPI000BEEE2DB	sporulation protein Cse60	NA
UHGV-0123013_47	Pfam	PF10957	Sporulation protein Cse60	Spore_Cse60
UHGV-0123013_47	Structural annotation	PF10957	NA	NA
UHGV-0123013_49	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0123013_49	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0123013_49	UniRef90	UniRef90_UPI001F2C0186	DEAD/DEAH box helicase	NA
UHGV-0123013_49	eggNOG-mapper	326425.lhe_1231	Helicase C-terminal domain protein	NA
UHGV-0123013_49	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0123013_49	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0123013_49	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0123013_49	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0123013_49	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0123013_51	eggNOG-mapper	97137.C821_00657	NA	NA
UHGV-0123013_53	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0123013_53	UniRef90	UniRef90_UPI0018AADEBD	siphovirus Gp157 family protein	NA
UHGV-0123013_53	eggNOG-mapper	97137.C821_00655	Siphovirus Gp157	NA
UHGV-0123013_53	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0123013_53	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0123013_55	PHROG	phrog_823	NA	unknown function
UHGV-0123013_55	UniRef90	UniRef90_UPI001CC405E3	NA	NA
UHGV-0123013_55	eggNOG-mapper	891391.LAC30SC_06675	NA	NA
UHGV-0123013_55	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0123013_58	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0123013_58	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0123013_58	UniRef90	UniRef90_A0A2V4EN93	Phage repressor protein/antirepressor Ant	NA
UHGV-0123013_58	eggNOG-mapper	1206110.L0P8P6_9CAUD	DNA binding	NA
UHGV-0123013_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0123013_58	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0123013_58	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0123013_59	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0123013_59	UniRef90	UniRef90_UPI0015623476	helix-turn-helix domain-containing protein	NA
UHGV-0123013_59	eggNOG-mapper	97137.C821_00648	NA	NA
UHGV-0123013_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123013_59	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0123013_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0123013_60	UniRef90	UniRef90_N2A3E5	HTH cro/C1-type domain-containing protein	NA
UHGV-0123013_60	eggNOG-mapper	97137.C821_00647	sequence-specific DNA binding	NA
UHGV-0123013_60	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0123013_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0123013_60	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0123013_61	PHROG	phrog_87	metallo-protease	other
UHGV-0123013_61	UniRef90	UniRef90_A0A4S2BRV8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0123013_61	eggNOG-mapper	1423814.HMPREF0549_1751	Zn peptidase	NA
UHGV-0123013_61	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0123013_61	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0123013_61	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0123013_62	UniRef90	UniRef90_G8PD13	Prophage Lp1 protein 6	NA
UHGV-0123013_62	eggNOG-mapper	701521.PECL_876	NA	NA
UHGV-0123013_63	KOfam	K14059	int; integrase	NA
UHGV-0123013_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0123013_63	UniRef90	UniRef90_A0A809VU59	Site-specific integrase	NA
UHGV-0123013_63	eggNOG-mapper	326425.lhe_1242	Belongs to the 'phage' integrase family	NA
UHGV-0123013_63	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0123013_63	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0123013_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123013_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0123013_63	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA