UHGV-0123164

Genome information

Genome length 44,811 bps

CDS count 61

Completeness 87.46% (medium-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123164
vOTU ID	vOTU-023156
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_321934
BioSample	SAMN00791943
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.03
Jumbo phage	No

Genome content
Genome length	44,811 bps
GC content	41.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.15%
Average CDS length	681.44 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123164_1	PHROG	phrog_5783	NA	unknown function
UHGV-0123164_1	UniRef90	UniRef90_R5KPF4	NYN domain-containing protein	NA
UHGV-0123164_1	eggNOG-mapper	465515.Mlut_22170	NYN domain	NA
UHGV-0123164_1	Pfam	PF01936	NYN domain	NYN
UHGV-0123164_1	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0123164_1	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0123164_3	UniRef90	UniRef90_R5YHC1	Ribosomal protein L7/L12	NA
UHGV-0123164_3	eggNOG-mapper	1280696.ATVY01000086_gene2001	NA	NA
UHGV-0123164_4	eggNOG-mapper	1280696.ATVY01000006_gene906	DNA/RNA non-specific endonuclease	NA
UHGV-0123164_4	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0123164_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0123164_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0123164_5	UniRef90	UniRef90_A0A3E2SXH2	Helix-turn-helix domain-containing protein	NA
UHGV-0123164_5	eggNOG-mapper	1203606.HMPREF1526_00998	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0123164_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123164_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0123164_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0123164_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF041951, COG1396, COG1974	NA	NA
UHGV-0123164_6	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0123164_7	UniRef90	UniRef90_A0A350XUK9	HTH cro/C1-type domain-containing protein	NA
UHGV-0123164_7	eggNOG-mapper	86416.Clopa_0315	Helix-turn-helix XRE-family like proteins	NA
UHGV-0123164_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123164_8	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0123164_10	PHROG	phrog_750	NA	unknown function
UHGV-0123164_10	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0123164_10	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0123164_11	PHROG	phrog_26314	NA	unknown function
UHGV-0123164_12	PHROG	phrog_22529	NA	unknown function
UHGV-0123164_12	UniRef90	UniRef90_A0A355KXV5	3D domain-containing protein	NA
UHGV-0123164_12	eggNOG-mapper	537007.BLAHAN_05080	3D domain	NA
UHGV-0123164_12	Pfam	PF06725	3D domain	3D
UHGV-0123164_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0123164_12	Structural annotation	PF06725, MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0123164_14	PHROG	phrog_674	NA	unknown function
UHGV-0123164_14	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0123164_14	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0123164_14	Pfam	PF07083	NA	DUF1351
UHGV-0123164_14	Structural annotation	PF07083	NA	NA
UHGV-0123164_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0123164_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0123164_15	UniRef90	UniRef90_A0A355KWE4	Recombinase	NA
UHGV-0123164_15	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0123164_15	Pfam	PF03837	RecT family	RecT
UHGV-0123164_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0123164_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0123164_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0123164_16	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0123164_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0123164_16	UniRef90	UniRef90_A0A355KXN6	Lactamase_B domain-containing protein	NA
UHGV-0123164_16	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0123164_16	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0123164_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0123164_16	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0123164_17	PHROG	phrog_398	NA	unknown function
UHGV-0123164_17	UniRef90	UniRef90_UPI001E4CD732	putative HNHc nuclease	NA
UHGV-0123164_17	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0123164_17	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0123164_17	Structural annotation	PF16784	NA	NA
UHGV-0123164_18	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0123164_18	UniRef90	UniRef90_A0A355KVK1	NA	NA
UHGV-0123164_18	eggNOG-mapper	755731.Clo1100_1141	NA	NA
UHGV-0123164_18	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0123164_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0123164_18	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0123164_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0123164_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0123164_19	UniRef90	UniRef90_A0A355KVR8	AAA domain-containing protein	NA
UHGV-0123164_19	eggNOG-mapper	1473546.CH76_01850	IstB-like ATP binding protein	NA
UHGV-0123164_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0123164_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0123164_19	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0123164_20	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0123164_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0123164_20	UniRef90	UniRef90_R6E553	DNA methylase family protein	NA
UHGV-0123164_20	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0123164_20	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0123164_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0123164_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0123164_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0123164_20	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0123164_22	PHROG	phrog_38338	NA	unknown function
UHGV-0123164_22	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0123164_22	eggNOG-mapper	665956.HMPREF1032_03098	NA	NA
UHGV-0123164_22	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0123164_23	PHROG	phrog_8470	NA	unknown function
UHGV-0123164_23	UniRef90	UniRef90_A0A7G8TD95	PcfJ domain-containing protein	NA
UHGV-0123164_23	eggNOG-mapper	1256908.HMPREF0373_02105	PcfJ-like protein	NA
UHGV-0123164_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0123164_23	Structural annotation	PF14284	NA	NA
UHGV-0123164_24	PHROG	phrog_3253	NA	unknown function
UHGV-0123164_24	UniRef90	UniRef90_A0A355KVS1	Resolvase	NA
UHGV-0123164_24	eggNOG-mapper	272563.CD630_29420	NA	NA
UHGV-0123164_25	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0123164_25	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0123164_25	UniRef90	UniRef90_A0A349DE48	Beta sliding clamp	NA
UHGV-0123164_25	eggNOG-mapper	1235793.C809_02201	DNA polymerase III beta subunit	NA
UHGV-0123164_25	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0123164_25	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0123164_25	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0123164_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0123164_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0123164_26	UniRef90	UniRef90_A0A355KXP4	Single-stranded DNA-binding protein	NA
UHGV-0123164_26	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0123164_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0123164_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0123164_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0123164_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0123164_26	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0123164_29	PHROG	phrog_4973	NA	unknown function
UHGV-0123164_29	UniRef90	UniRef90_R5Y7B1	Conserved domain protein	NA
UHGV-0123164_29	eggNOG-mapper	339671.Asuc_1218	Helix-turn-helix domain	NA
UHGV-0123164_29	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0123164_29	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0123164_31	PHROG	phrog_1558	NA	unknown function
UHGV-0123164_31	UniRef90	UniRef90_A0A2N5P3K0	HTH_11 domain-containing protein	NA
UHGV-0123164_31	eggNOG-mapper	665956.HMPREF1032_03078	NA	NA
UHGV-0123164_33	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0123164_33	UniRef90	UniRef90_A0A4R4D079	Terminase	NA
UHGV-0123164_33	eggNOG-mapper	457412.RSAG_04668	NA	NA
UHGV-0123164_33	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0123164_33	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0123164_33	COG	COG5484	NA	NA
UHGV-0123164_33	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0123164_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0123164_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0123164_34	UniRef90	UniRef90_A0A349DCJ8	PBSX family phage terminase large subunit	NA
UHGV-0123164_34	eggNOG-mapper	1032362.F6K8Q6_9CAUD	DNA packaging	NA
UHGV-0123164_34	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0123164_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0123164_34	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0123164_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0123164_35	UniRef90	UniRef90_A0A1H7MQM5	Phage portal protein, putative, A118 family	NA
UHGV-0123164_35	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0123164_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0123164_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0123164_36	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0123164_36	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0123164_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0123164_36	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0123164_36	COG	COG2369	NA	NA
UHGV-0123164_36	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0123164_37	PHROG	phrog_1865	NA	unknown function
UHGV-0123164_37	eggNOG-mapper	1391647.AVSV01000003_gene1805	NA	NA
UHGV-0123164_37	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-0123164_38	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0123164_38	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0123164_38	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-0123164_38	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0123164_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0123164_39	UniRef90	UniRef90_A0A355KUP4	t-SNARE coiled-coil homology domain-containing protein	NA
UHGV-0123164_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0123164_39	Structural annotation	PF06810	NA	NA
UHGV-0123164_40	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0123164_40	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0123164_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0123164_42	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0123164_43	PHROG	phrog_3366	NA	unknown function
UHGV-0123164_43	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0123164_43	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0123164_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0123164_44	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0123164_44	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0123164_44	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0123164_44	Structural annotation	PF11114	NA	NA
UHGV-0123164_45	PHROG	phrog_3266	tail completion	connector
UHGV-0123164_45	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0123164_45	Structural annotation	PF12691	NA	NA
UHGV-0123164_46	PHROG	phrog_3099	NA	unknown function
UHGV-0123164_46	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0123164_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0123164_47	Structural annotation	PF10666	NA	NA
UHGV-0123164_48	PHROG	phrog_706	NA	unknown function
UHGV-0123164_48	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0123164_48	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0123164_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0123164_48	Structural annotation	PF06854	NA	NA
UHGV-0123164_49	eggNOG-mapper	1504823.CCMM01000008_gene1032	phage tail tape measure protein	NA
UHGV-0123164_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0123164_50	PHROG	phrog_1194	NA	unknown function
UHGV-0123164_51	PHROG	phrog_1330	tail protein	tail
UHGV-0123164_51	UniRef90	UniRef90_R5YH87	CBM-cenC domain-containing protein	NA
UHGV-0123164_51	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0123164_51	COG	COG4926	Phage-related protein	NA
UHGV-0123164_51	Structural annotation	PF05113, PF04862, NF033848, COG3500	NA	NA
UHGV-0123164_52	PHROG	phrog_1401	NA	unknown function
UHGV-0123164_52	eggNOG-mapper	945713.IALB_0071	NA	NA
UHGV-0123164_52	Structural annotation	PF07761	NA	NA
UHGV-0123164_57	PHROG	phrog_1863	NA	unknown function
UHGV-0123164_57	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0123164_58	PHROG	phrog_263	holin	lysis
UHGV-0123164_58	UniRef90	UniRef90_A0A355KVP4	Phage holin	NA
UHGV-0123164_58	eggNOG-mapper	1121344.JHZO01000004_gene1372	SPP1 phage holin	NA
UHGV-0123164_58	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0123164_58	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0123164_58	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0123164_59	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0123164_59	PHROG	phrog_435	endolysin	lysis
UHGV-0123164_59	UniRef90	UniRef90_A0A350XYL2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0123164_59	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0123164_59	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0123164_59	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0123164_59	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0123164_59	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0123164_60	eggNOG-mapper	1408324.JNJK01000013_gene19	NA	NA
UHGV-0123164_61	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24