UHGV-0123177

Genome information

Genome length 27,918 bps

CDS count 43

Completeness 86.27% (medium-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123177
vOTU ID	vOTU-018971
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_320692
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.83
Jumbo phage	No

Genome content
Genome length	27,918 bps
GC content	39.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.84%
Average CDS length	598.12 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123177_1	PHROG	phrog_20163	NA	unknown function
UHGV-0123177_1	UniRef90	UniRef90_I2NTU1	ABC transporter, ATP-binding family protein	NA
UHGV-0123177_1	eggNOG-mapper	1114965.Spaf_0780	NA	NA
UHGV-0123177_1	COG	COG1131	ABC-type multidrug transport system, ATPase component	NA
UHGV-0123177_2	KOfam	K14059	int; integrase	NA
UHGV-0123177_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0123177_2	UniRef90	UniRef90_A0A4D6A9L0	Integrase	NA
UHGV-0123177_2	eggNOG-mapper	999425.HMPREF9186_01996	Belongs to the 'phage' integrase family	NA
UHGV-0123177_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0123177_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0123177_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123177_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0123177_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0123177_3	UniRef90	UniRef90_A0A1F1A2U3	NA	NA
UHGV-0123177_3	eggNOG-mapper	1460634.JCM19037_1434	Short C-terminal domain	NA
UHGV-0123177_3	Pfam	PF14472	NA	DUF4429
UHGV-0123177_4	PHROG	phrog_87	metallo-protease	other
UHGV-0123177_4	UniRef90	UniRef90_A0A4D6A8I2	Peptidase_M78 domain-containing protein	NA
UHGV-0123177_4	eggNOG-mapper	173707.Q938N7_9CAUD	Pfam:Peptidase_M78	NA
UHGV-0123177_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0123177_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0123177_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0123177_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0123177_5	UniRef90	UniRef90_A0A1F1A424	Transcriptional regulator	NA
UHGV-0123177_5	eggNOG-mapper	999425.HMPREF9186_01999	Transcriptional regulator	NA
UHGV-0123177_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123177_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0123177_5	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0123177_6	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0123177_6	UniRef90	UniRef90_A0A1F1CD60	DNA-binding protein	NA
UHGV-0123177_6	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0123177_7	PHROG	phrog_5866	NA	unknown function
UHGV-0123177_7	UniRef90	UniRef90_A0A7X3BPB2	HTH merR-type domain-containing protein	NA
UHGV-0123177_7	eggNOG-mapper	35344.A0A097PAT8_BPT12	NA	NA
UHGV-0123177_7	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0123177_8	PHROG	phrog_2113	NA	unknown function
UHGV-0123177_8	UniRef90	UniRef90_A0A6A8V8C7	HTH_11 domain-containing protein	NA
UHGV-0123177_8	eggNOG-mapper	1123314.AUIO01000015_gene674	NA	NA
UHGV-0123177_8	Structural annotation	PF11994, MF_01177, TIGR02944, COG1959	NA	NA
UHGV-0123177_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0123177_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0123177_10	UniRef90	UniRef90_A0A7X2X3C2	Replicative DNA helicase	NA
UHGV-0123177_10	eggNOG-mapper	1123314.AUIO01000016_gene818	Participates in initiation and elongation during chromosome replication	NA
UHGV-0123177_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0123177_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0123177_10	NCBIFam	NF004384.0	replicative DNA helicase	NA
UHGV-0123177_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0123177_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0123177_11	PHROG	phrog_1163	NA	unknown function
UHGV-0123177_11	UniRef90	UniRef90_A0A7X2X364	DnaD domain protein	NA
UHGV-0123177_11	eggNOG-mapper	1214184.ALKY01000039_gene945	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0123177_11	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0123177_11	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0123177_11	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0123177_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0123177_11	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG0640	NA	NA
UHGV-0123177_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0123177_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0123177_12	UniRef90	UniRef90_A0A4D6B4J6	DNA helicase loader	NA
UHGV-0123177_12	eggNOG-mapper	888049.HMPREF8578_0284	DNA-dependent DNA replication	NA
UHGV-0123177_12	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0123177_12	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0123177_12	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0123177_13	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-0123177_13	UniRef90	UniRef90_A0A4D6B3B6	DNA-binding protein	NA
UHGV-0123177_13	eggNOG-mapper	585203.SMSK564_1297	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0123177_13	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0123177_13	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0123177_14	PHROG	phrog_236	nucleotide kinase	other
UHGV-0123177_14	UniRef90	UniRef90_UPI0019553FA4	NA	NA
UHGV-0123177_14	eggNOG-mapper	1403946.Q615_SPAC00127G0145	NA	NA
UHGV-0123177_14	Pfam	PF11753	NA	DUF3310
UHGV-0123177_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0123177_15	UniRef90	UniRef90_A0A4D6B234	HTH cro/C1-type domain-containing protein	NA
UHGV-0123177_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123177_15	Structural annotation	PF01381, MF_00535, NF041575, COG3655	NA	NA
UHGV-0123177_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0123177_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0123177_17	UniRef90	UniRef90_A0A7X2X333	Single-stranded DNA-binding protein	NA
UHGV-0123177_17	eggNOG-mapper	1297534.CAUJ01000005_gene193	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0123177_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0123177_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0123177_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0123177_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0123177_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0123177_18	PHROG	phrog_121	NA	unknown function
UHGV-0123177_18	UniRef90	UniRef90_UPI001896D8BB	NA	NA
UHGV-0123177_18	eggNOG-mapper	1282664.H354_07590	NA	NA
UHGV-0123177_18	Pfam	PF07852	NA	DUF1642
UHGV-0123177_18	Structural annotation	PF07852, PF11061	NA	NA
UHGV-0123177_19	PHROG	phrog_33566	NA	unknown function
UHGV-0123177_19	UniRef90	UniRef90_A0A139Q9N5	NA	NA
UHGV-0123177_21	PHROG	phrog_29132	NA	unknown function
UHGV-0123177_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0123177_22	UniRef90	UniRef90_UPI001C8C424D	transcriptional regulator	NA
UHGV-0123177_22	eggNOG-mapper	873447.SPB_0690	Transcriptional regulator, RinA family	NA
UHGV-0123177_22	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0123177_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0123177_23	PHROG	phrog_216	integrase	integration and excision
UHGV-0123177_23	UniRef90	UniRef90_A0A4D6B299	Site-specific recombinase	NA
UHGV-0123177_23	eggNOG-mapper	644007.C5J955_9CAUD	Phage integrase family	NA
UHGV-0123177_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123177_23	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0123177_24	UniRef90	UniRef90_UPI0003FBCA67	NA	NA
UHGV-0123177_25	PHROG	phrog_121	NA	unknown function
UHGV-0123177_25	UniRef90	UniRef90_A0A6L6LDJ3	NA	NA
UHGV-0123177_25	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-0123177_25	Pfam	PF07852	NA	DUF1642
UHGV-0123177_25	Structural annotation	PF07852	NA	NA
UHGV-0123177_26	PHROG	phrog_98	NA	unknown function
UHGV-0123177_26	UniRef90	UniRef90_A0A0P0N5Y9	YopX domain-containing protein	NA
UHGV-0123177_26	eggNOG-mapper	768486.EHR_02675	YopX protein	NA
UHGV-0123177_26	Pfam	PF09643	YopX protein	YopX
UHGV-0123177_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0123177_27	PHROG	phrog_5627	NA	unknown function
UHGV-0123177_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123177_28	UniRef90	UniRef90_A0A062WSH4	Bacteriophage nuclease	NA
UHGV-0123177_28	eggNOG-mapper	888049.HMPREF8578_0692	endonuclease activity	NA
UHGV-0123177_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0123177_29	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0123177_29	UniRef90	UniRef90_A0A414CIM9	POU-specific domain-containing protein	NA
UHGV-0123177_29	eggNOG-mapper	1316408.HSISM1_1050	Phage terminase, small subunit	NA
UHGV-0123177_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0123177_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0123177_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0123177_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0123177_30	UniRef90	UniRef90_A0A7G1IQ86	Terminase	NA
UHGV-0123177_30	eggNOG-mapper	888049.HMPREF8578_0694	Terminase	NA
UHGV-0123177_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0123177_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0123177_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0123177_30	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0123177_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0123177_31	UniRef90	UniRef90_A0A4D6B580	Portal (Connector) protein	NA
UHGV-0123177_31	eggNOG-mapper	1316408.HSISM1_1052	Phage portal protein	NA
UHGV-0123177_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0123177_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0123177_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0123177_31	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0123177_32	KOfam	K06904	NA	NA
UHGV-0123177_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0123177_32	UniRef90	UniRef90_A0A414CJ71	HK97 family phage prohead protease	NA
UHGV-0123177_32	eggNOG-mapper	1316408.HSISM1_1053	Caudovirus prohead serine protease	NA
UHGV-0123177_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0123177_32	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0123177_32	COG	COG3740	Phage head maturation protease	NA
UHGV-0123177_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0123177_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0123177_33	UniRef90	UniRef90_A0A4D6B1V9	Capsid protein	NA
UHGV-0123177_33	eggNOG-mapper	1316408.HSISM1_1054	capsid protein	NA
UHGV-0123177_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0123177_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0123177_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0123177_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0123177_34	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0123177_34	UniRef90	UniRef90_A0A0P0N6K2	Phage transcriptional terminator	NA
UHGV-0123177_35	PHROG	phrog_2550	NA	unknown function
UHGV-0123177_35	UniRef90	UniRef90_T0U4H0	Orf46	NA
UHGV-0123177_35	eggNOG-mapper	644007.C5J965_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0123177_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0123177_36	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0123177_36	UniRef90	UniRef90_A0A414CIH3	Phage head closure protein	NA
UHGV-0123177_36	eggNOG-mapper	1316408.HSISM1_1057	Phage head-tail joining protein	NA
UHGV-0123177_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0123177_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0123177_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0123177_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0123177_37	UniRef90	UniRef90_A0A414CIF4	HK97 gp10 family phage protein	NA
UHGV-0123177_37	eggNOG-mapper	1316408.HSISM1_1058	NA	NA
UHGV-0123177_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0123177_37	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0123177_38	PHROG	phrog_78	tail terminator	connector
UHGV-0123177_38	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-0123177_38	eggNOG-mapper	1316408.HSISM1_1241	NA	NA
UHGV-0123177_38	Structural annotation	PF20765	NA	NA
UHGV-0123177_39	PHROG	phrog_88	major tail protein	tail
UHGV-0123177_39	UniRef90	UniRef90_T0U4F0	Phage major tail protein	NA
UHGV-0123177_39	eggNOG-mapper	1316408.HSISM1_1242	phage major tail protein, phi13 family	NA
UHGV-0123177_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0123177_39	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0123177_40	PHROG	phrog_709	NA	unknown function
UHGV-0123177_40	UniRef90	UniRef90_A0A0E4CSV4	Prophage pi2 protein 40	NA
UHGV-0123177_40	eggNOG-mapper	1316408.HSISM1_1243	NA	NA
UHGV-0123177_40	Structural annotation	PF11836	NA	NA
UHGV-0123177_41	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0123177_41	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0123177_41	UniRef90	UniRef90_A0A1F0KCN3	Phage tail tape measure protein	NA
UHGV-0123177_41	eggNOG-mapper	1316408.HSISM1_1244	Phage tail tape measure protein	NA
UHGV-0123177_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0123177_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0123177_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0123177_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0123177_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0123177_42	UniRef90	UniRef90_UPI001CC00BD7	phage tail protein	NA
UHGV-0123177_42	eggNOG-mapper	1316408.HSISM1_1245	NA	NA
UHGV-0123177_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0123177_43	PHROG	phrog_2189	tail protein	tail
UHGV-0123177_43	UniRef90	UniRef90_UPI000682608A	phage tail protein	NA
UHGV-0123177_43	eggNOG-mapper	1316408.HSISM1_1246	Phage minor structural protein	NA
UHGV-0123177_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0123177_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0123177_43	COG	COG1511	NA	NA
UHGV-0123177_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA