UHGV-0123198

Genome information

Genome length 10,364 bps

CDS count 14

Completeness 74.62% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123198
vOTU ID	vOTU-034236
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_320083
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.53
Jumbo phage	No

Genome content
Genome length	10,364 bps
GC content	36.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	14
CDS density	94.12%
Average CDS length	704.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123198_5	PHROG	phrog_2038	upper collar connector	connector
UHGV-0123198_5	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0123198_5	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0123198_5	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0123198_5	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0123198_6	Structural annotation	PF20934	NA	NA
UHGV-0123198_7	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0123198_7	UniRef90	UniRef90_A0A843HBI5	Ig-like domain-containing protein	NA
UHGV-0123198_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0123198_9	PHROG	phrog_11037	NA	unknown function
UHGV-0123198_9	UniRef90	UniRef90_A0A4P6M1D5	Peptidoglycan endopeptidase RipA	NA
UHGV-0123198_9	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0123198_9	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0123198_9	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0123198_9	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0123198_11	KOfam	K07273	acm; lysozyme	NA
UHGV-0123198_11	PHROG	phrog_291	endolysin	lysis
UHGV-0123198_11	UniRef90	UniRef90_E6MGW6	Glycosyl hydrolase family 25	NA
UHGV-0123198_11	eggNOG-mapper	887929.HMP0721_1250	hydrolase, family 25	NA
UHGV-0123198_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0123198_11	COG	COG1388	LysM repeat	NA
UHGV-0123198_11	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0123198_13	PHROG	phrog_2150	terminase	head and packaging
UHGV-0123198_13	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0123198_13	eggNOG-mapper	1094755.MCO_01569	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0123198_13	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0123198_13	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0123198_14	Structural annotation	PF17427	NA	NA