UHGV-0123286

Genome information

Genome length 21,471 bps

CDS count 38

Completeness 50.73% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123286
vOTU ID	vOTU-030378
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_319158
BioSample	SAMN01041705
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.41
Jumbo phage	No

Genome content
Genome length	21,471 bps
GC content	47.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	87.48%
Average CDS length	498.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123286_1	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0123286_1	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0123286_1	UniRef90	UniRef90_UPI0010DE9CC8	lysis system i-spanin subunit Rz	NA
UHGV-0123286_1	eggNOG-mapper	432201.K7P710_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-0123286_1	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0123286_2	PHROG	phrog_17029	NA	unknown function
UHGV-0123286_2	UniRef90	UniRef90_P03706	Endolysin	NA
UHGV-0123286_2	eggNOG-mapper	1524881.A0A088CPU7_9CAUD	Phage lysozyme	NA
UHGV-0123286_2	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0123286_2	HAMAP	MF_04109	Endolysin	NA
UHGV-0123286_2	Structural annotation	MF_04109, COG4678	NA	NA
UHGV-0123286_3	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0123286_3	UniRef90	UniRef90_P03705	Antiholin	NA
UHGV-0123286_3	eggNOG-mapper	10761.Q716B7_BPSFV	Pfam:Phage_holin_3_1	NA
UHGV-0123286_3	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0123286_3	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0123286_3	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0123286_4	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0123286_4	UniRef90	UniRef90_E2QJL6	Antitermination protein	NA
UHGV-0123286_4	eggNOG-mapper	1090133.G8EYI3_9CAUD	heat shock protein binding	NA
UHGV-0123286_4	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0123286_4	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0123286_5	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-0123286_5	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123286_5	UniRef90	UniRef90_B1EP57	Serine/threonine-protein phosphatase 1	NA
UHGV-0123286_5	eggNOG-mapper	155864.EDL933_0858	Calcineurin-like phosphoesterase	NA
UHGV-0123286_5	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0123286_5	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-0123286_5	Structural annotation	PF12850, MF_01443, NF008516, COG0622	NA	NA
UHGV-0123286_6	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123286_6	UniRef90	UniRef90_P03770	Protein ninG	NA
UHGV-0123286_6	eggNOG-mapper	1147157.K7PHM2_9CAUD	Bacteriophage Lambda NinG protein	NA
UHGV-0123286_6	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0123286_6	Structural annotation	PF05766	NA	NA
UHGV-0123286_7	PHROG	phrog_672	NA	unknown function
UHGV-0123286_7	UniRef90	UniRef90_A0A1V3CAM0	Protein ninF	NA
UHGV-0123286_7	eggNOG-mapper	90371.CY43_01795	NinF protein	NA
UHGV-0123286_7	Pfam	PF05810	NinF protein	NinF
UHGV-0123286_8	PHROG	phrog_1511	NA	unknown function
UHGV-0123286_8	eggNOG-mapper	1147146.K7P8B7_9CAUD	exonuclease activity	NA
UHGV-0123286_9	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0123286_9	PHROG	phrog_33262	NA	unknown function
UHGV-0123286_9	UniRef90	UniRef90_UPI0011226670	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0123286_9	eggNOG-mapper	1168549.I6R0S6_9CAUD	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0123286_9	PADLOC	SspD_00001	SspD	SSP
UHGV-0123286_9	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0123286_9	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0123286_10	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0123286_10	UniRef90	UniRef90_P03765	Protein ninB	NA
UHGV-0123286_10	eggNOG-mapper	199310.c1554	NinB protein	NA
UHGV-0123286_10	Pfam	PF05772	NinB protein	NinB
UHGV-0123286_10	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0123286_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0123286_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0123286_11	UniRef90	UniRef90_A0A2V2J552	DNA helicase	NA
UHGV-0123286_11	eggNOG-mapper	254397.B6ETB7_9CAUD	DnaB-like helicase N terminal domain	NA
UHGV-0123286_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0123286_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0123286_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0123286_12	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0123286_12	UniRef90	UniRef90_A0A8D5QLK2	Phage_rep_O domain-containing protein	NA
UHGV-0123286_12	eggNOG-mapper	1127357.I1TEG0_9CAUD	DNA replication	NA
UHGV-0123286_12	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0123286_12	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0123286_12	Structural annotation	PF04492, TIGR01610, COG3388	NA	NA
UHGV-0123286_13	PHROG	phrog_1331	NA	unknown function
UHGV-0123286_13	UniRef90	UniRef90_A0A0J2A1R9	NA	NA
UHGV-0123286_13	eggNOG-mapper	10761.Q716D4_BPSFV	NA	NA
UHGV-0123286_14	PHROG	phrog_191	CII-like transcriptional activator	transcription regulation
UHGV-0123286_14	UniRef90	UniRef90_E3PHH4	Transcriptional activator protein	NA
UHGV-0123286_14	eggNOG-mapper	101570.Q5G8T2_9CAUD	Bacteriophage CII protein	NA
UHGV-0123286_14	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0123286_14	Structural annotation	PF05269	NA	NA
UHGV-0123286_15	UniRef90	UniRef90_A0A0C2AWU6	Cro	NA
UHGV-0123286_15	eggNOG-mapper	1147143.K7P6T9_9CAUD	Cro	NA
UHGV-0123286_15	Pfam	PF09048	Cro	Cro
UHGV-0123286_15	Structural annotation	PF09048	NA	NA
UHGV-0123286_16	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0123286_16	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0123286_16	UniRef90	UniRef90_Q9AZ21	Repressor protein cI	NA
UHGV-0123286_16	eggNOG-mapper	1147143.K7P7K3_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0123286_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123286_16	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0123286_16	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0123286_17	PHROG	phrog_6534	NA	unknown function
UHGV-0123286_17	eggNOG-mapper	1147146.K7P7U3_9CAUD	NA	NA
UHGV-0123286_18	PHROG	phrog_271	anti-termination protein N-like	transcription regulation
UHGV-0123286_18	UniRef90	UniRef90_A0A2T3V8P6	Regulatory protein N	NA
UHGV-0123286_18	eggNOG-mapper	1147146.K7P8A7_9CAUD	NA	NA
UHGV-0123286_19	PHROG	phrog_2471	NA	unknown function
UHGV-0123286_19	eggNOG-mapper	1147147.K7P6Y1_9CAUD	NA	NA
UHGV-0123286_20	PHROG	phrog_1578	NA	unknown function
UHGV-0123286_20	eggNOG-mapper	867696.E1XTF6_BPSAV	NA	NA
UHGV-0123286_21	PHROG	phrog_1510	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0123286_21	UniRef90	UniRef90_O48416	Protein gp17	NA
UHGV-0123286_21	eggNOG-mapper	173443.Q8HAH1_BPST6	Pfam:Gp17	NA
UHGV-0123286_21	Pfam	PF17420	Superinfection exclusion gene product 17	GP17
UHGV-0123286_22	PHROG	phrog_550	CIII anti-termination	transcription regulation
UHGV-0123286_22	UniRef90	UniRef90_P18681	Regulatory protein CIII	NA
UHGV-0123286_22	Pfam	PF08134	cIII protein family	cIII
UHGV-0123286_23	PHROG	phrog_2055	Kil protein for bacterial septation inhibition	other
UHGV-0123286_23	UniRef90	UniRef90_P18682	Protein kil	NA
UHGV-0123286_23	eggNOG-mapper	10761.Q716E4_BPSFV	Bacteriophage lambda Kil protein	NA
UHGV-0123286_23	Pfam	PF06301	Bacteriophage lambda Kil protein	Lambda_Kil
UHGV-0123286_24	PHROG	phrog_1723	recombinase	other
UHGV-0123286_24	UniRef90	UniRef90_A0A0H3CPM1	Gp42	NA
UHGV-0123286_24	eggNOG-mapper	1147147.K7P7W5_9CAUD	NA	NA
UHGV-0123286_25	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0123286_25	UniRef90	UniRef90_A0A0C2DES7	DNA single-strand annealing protein essential recombination function protein Erf	NA
UHGV-0123286_25	eggNOG-mapper	754331.AEME01000001_gene3599	ERF superfamily	NA
UHGV-0123286_25	Pfam	PF04404	ERF superfamily	ERF
UHGV-0123286_25	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0123286_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0123286_26	UniRef90	UniRef90_Q9MCR0	Gp40	NA
UHGV-0123286_26	eggNOG-mapper	754331.AEME01000001_gene3600	NA	NA
UHGV-0123286_27	PHROG	phrog_656	abc2 anti-RecBCD	moron, auxiliary metabolic gene and host takeover
UHGV-0123286_27	UniRef90	UniRef90_P11191	Anti-RecBCD protein 2	NA
UHGV-0123286_27	eggNOG-mapper	1524881.A0A088CQ60_9CAUD	NA	NA
UHGV-0123286_27	Pfam	PF11043	Bacteriophage P22, anti-RecBCD protein 2	Anti-RecBCD_p2
UHGV-0123286_27	dbAPIS	APIS020	Bacteriophage P22 Abc2 protein binds to the RecBCD enzyme from E. coli to promote phage growth and recombination; the RecBCD-Abc2 structure shows that Abc2 binds to the Chi-recognition domains of the RecC subunit in a position that might enable it to mediate the loading of phage recombinases onto its single-stranded DNA products.	NA
UHGV-0123286_27	Structural annotation	PF11043	NA	NA
UHGV-0123286_28	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0123286_28	UniRef90	UniRef90_A0A2R3NM21	Gene 24 protein	NA
UHGV-0123286_28	eggNOG-mapper	1147145.K7P7M4_9CAUD	NA	NA
UHGV-0123286_28	Pfam	PF17399	NA	DUF5405
UHGV-0123286_28	Structural annotation	PF17399	NA	NA
UHGV-0123286_29	PHROG	phrog_1117	NA	unknown function
UHGV-0123286_29	UniRef90	UniRef90_UPI0015D5BEA6	NA	NA
UHGV-0123286_29	eggNOG-mapper	1524881.A0A088CPT5_9CAUD	NA	NA
UHGV-0123286_29	Pfam	PF10930	NA	DUF2737
UHGV-0123286_29	Structural annotation	PF10930	NA	NA
UHGV-0123286_30	PHROG	phrog_614	NA	unknown function
UHGV-0123286_30	UniRef90	UniRef90_A0A658XY20	Bacteriophage protein	NA
UHGV-0123286_30	eggNOG-mapper	1090133.G8EYH3_9CAUD	NA	NA
UHGV-0123286_31	PHROG	phrog_3126	NA	unknown function
UHGV-0123286_31	UniRef90	UniRef90_A0A2X3JVV3	Transposase	NA
UHGV-0123286_31	eggNOG-mapper	1524881.A0A088CQ13_9CAUD	NA	NA
UHGV-0123286_32	PHROG	phrog_3205	NA	unknown function
UHGV-0123286_32	UniRef90	UniRef90_A0A4Y8GH41	Ead/Ea22-like family protein	NA
UHGV-0123286_32	eggNOG-mapper	155864.EDL933_3272	nuclear chromosome segregation	NA
UHGV-0123286_32	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-0123286_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0123286_32	Structural annotation	PF13935	NA	NA
UHGV-0123286_33	PHROG	phrog_9263	NA	unknown function
UHGV-0123286_33	eggNOG-mapper	1124654.G9L6B3_9CAUD	NA	NA
UHGV-0123286_33	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0123286_34	PHROG	phrog_60	NA	unknown function
UHGV-0123286_34	UniRef90	UniRef90_A0A2U9LFN4	NA	NA
UHGV-0123286_34	eggNOG-mapper	155864.EDL933_1717	NA	NA
UHGV-0123286_34	Pfam	PF04448	NA	DUF551
UHGV-0123286_35	PHROG	phrog_285	NA	unknown function
UHGV-0123286_35	UniRef90	UniRef90_A0A1U9TRX9	Bacteriophage protein	NA
UHGV-0123286_35	eggNOG-mapper	103807.Q8W656_9CAUD	NA	NA
UHGV-0123286_35	Pfam	PF13973	NA	DUF4222
UHGV-0123286_35	Structural annotation	PF13973, NF037951, COG4481	NA	NA
UHGV-0123286_36	PHROG	phrog_676	NA	unknown function
UHGV-0123286_36	eggNOG-mapper	1147143.K7P798_9CAUD	NA	NA
UHGV-0123286_36	Structural annotation	PF16857, MF_00273, COG2157	NA	NA
UHGV-0123286_37	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0123286_37	PHROG	phrog_7244	integrase	integration and excision
UHGV-0123286_37	UniRef90	UniRef90_P16407	Integrase	NA
UHGV-0123286_37	eggNOG-mapper	10742.Q77WA5_BPHK0	Phage integrase family	NA
UHGV-0123286_37	Pfam	PF09003	Bacteriophage lambda integrase, Arm DNA-binding domain	Arm-DNA-bind_1
UHGV-0123286_37	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0123286_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123286_37	Structural annotation	PF00589, PF09003, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0123286_38	KOfam	K07647	torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]	NA
UHGV-0123286_38	PHROG	phrog_18358	NA	unknown function
UHGV-0123286_38	UniRef90	UniRef90_P39453	Sensor protein TorS	NA
UHGV-0123286_38	eggNOG-mapper	362663.ECP_0991	Member of the two-component regulatory system TorS TorR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Detects the presence of TMAO in the medium and, in response, activates TorR via a four-step phosphorelay. When TMAO is removed, TorS can dephosphorylate TorR, probably by a reverse phosphorelay involving His-860 and Asp-733	NA
UHGV-0123286_38	Pfam	PF21689	Sensor protein TorS, sensor domain	TorS_sensor_domain
UHGV-0123286_38	Pfam	PF00672	HAMP domain	HAMP
UHGV-0123286_38	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0123286_38	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0123286_38	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0123286_38	Pfam	PF01627	Hpt domain	Hpt
UHGV-0123286_38	NCBIFam	NF008543.0	TMAO reductase system sensor histidine kinase/response regulator TorS	NA
UHGV-0123286_38	COG	COG0642	Signal transduction histidine kinase	NA