UHGV-0123308

Genome information

Genome length 34,886 bps

CDS count 42

Completeness 53.10% (medium-quality)

geNomad score 0.8710

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123308
vOTU ID	vOTU-018245
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_310164
BioSample	SAMEA37090918
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	53.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.8710
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.8
Jumbo phage	No

Genome content
Genome length	34,886 bps
GC content	53.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.50%
Average CDS length	778.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123308_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0123308_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0123308_1	UniRef90	UniRef90_UPI00101C2901	site-specific integrase	NA
UHGV-0123308_1	eggNOG-mapper	1433126.BN938_0141	Belongs to the 'phage' integrase family	NA
UHGV-0123308_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0123308_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0123308_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123308_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0123308_1	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0123308_2	eggNOG-mapper	709991.Odosp_3515	NA	NA
UHGV-0123308_3	KOfam	K13572	pafB; proteasome accessory factor B	NA
UHGV-0123308_3	UniRef90	UniRef90_UPI0013CFAEFB	WYL domain-containing protein	NA
UHGV-0123308_3	eggNOG-mapper	1121129.KB903360_gene3525	WYL domain	NA
UHGV-0123308_3	PADLOC	pfam13280	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated_signaling	CRISPR-CAS
UHGV-0123308_3	Pfam	PF13280	WYL domain	WYL
UHGV-0123308_3	COG	COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	NA
UHGV-0123308_3	Structural annotation	PF13280, PF09182, TIGR03985, COG2378	NA	NA
UHGV-0123308_4	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0123308_4	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0123308_4	UniRef90	UniRef90_A0A3D0NVQ0	DNA polymerase III subunit alpha (Fragment)	NA
UHGV-0123308_4	eggNOG-mapper	1121346.KB899810_gene1510	DNA polymerase	NA
UHGV-0123308_4	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0123308_4	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0123308_6	PHROG	phrog_30639	NA	unknown function
UHGV-0123308_6	eggNOG-mapper	1433126.BN938_0140	NA	NA
UHGV-0123308_6	Structural annotation	PF18975, PF10916, MF_01282, NF000022, COG4257, COG4379	NA	NA
UHGV-0123308_8	PHROG	phrog_873	endolysin	head and packaging
UHGV-0123308_8	UniRef90	UniRef90_UPI00189C60BB	structural protein P5	NA
UHGV-0123308_8	eggNOG-mapper	1433126.BN938_0138	NA	NA
UHGV-0123308_9	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0123308_9	UniRef90	UniRef90_UPI000C15DCE7	phage tail length tape measure family protein	NA
UHGV-0123308_9	eggNOG-mapper	1433126.BN938_0515	domain protein	NA
UHGV-0123308_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0123308_9	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0123308_10	PHROG	phrog_1841	Abi alpha-like abortive infection mechanism	moron, auxiliary metabolic gene and host takeover
UHGV-0123308_10	UniRef90	UniRef90_A0A1I2JJQ3	AIPR protein	NA
UHGV-0123308_10	eggNOG-mapper	28072.Nos7524_4292	AIPR protein	NA
UHGV-0123308_10	PADLOC	AbiU	AbiU	Abi
UHGV-0123308_10	Pfam	PF10592	AIPR protein	AIPR
UHGV-0123308_10	COG	COG2159	5-carboxyvanillate decarboxylase LigW (lignin degradation), amidohydro domain	NA
UHGV-0123308_10	Structural annotation	PF10592, PF04471, NF041935	NA	NA
UHGV-0123308_11	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-0123308_11	COG	COG4926	Phage-related protein	NA
UHGV-0123308_13	UniRef90	UniRef90_UPI00101CDCED	BspA family leucine-rich repeat surface protein	NA
UHGV-0123308_13	Pfam	PF03382	NA	DUF285
UHGV-0123308_13	Structural annotation	PF03382	NA	NA
UHGV-0123308_14	eggNOG-mapper	1121098.HMPREF1534_02334	NA	NA
UHGV-0123308_15	UniRef90	UniRef90_A0A143XDD0	NA	NA
UHGV-0123308_15	Pfam	PF14192	NA	DUF4314
UHGV-0123308_15	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0123308_15	Structural annotation	PF14192, NF007106	NA	NA
UHGV-0123308_17	Structural annotation	PF02185	NA	NA
UHGV-0123308_19	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0123308_19	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0123308_19	UniRef90	UniRef90_UPI001E56E7CE	DNA adenine methylase	NA
UHGV-0123308_19	eggNOG-mapper	1433126.BN938_0136	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0123308_19	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0123308_19	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0123308_19	COG	COG0338	DNA-adenine methylase	NA
UHGV-0123308_19	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0123308_22	Structural annotation	PF11836	NA	NA
UHGV-0123308_23	PHROG	phrog_1407	major tail protein	tail
UHGV-0123308_23	UniRef90	UniRef90_UPI00101DFFCB	phage tail tube protein	NA
UHGV-0123308_23	eggNOG-mapper	1236517.BAKO01000013_gene1445	Phage tail tube protein	NA
UHGV-0123308_23	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0123308_23	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0123308_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0123308_24	Structural annotation	PF11367	NA	NA
UHGV-0123308_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0123308_25	UniRef90	UniRef90_UPI001B3652B9	HK97 gp10 family phage protein	NA
UHGV-0123308_25	eggNOG-mapper	1433126.BN938_0520	NA	NA
UHGV-0123308_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0123308_25	Structural annotation	PF06763, TIGR01725	NA	NA
UHGV-0123308_26	PHROG	phrog_25	head closure Hc1	connector
UHGV-0123308_26	UniRef90	UniRef90_UPI00189E23FD	phage head closure protein	NA
UHGV-0123308_26	eggNOG-mapper	697281.Mahau_2908	Phage head-tail joining protein	NA
UHGV-0123308_26	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0123308_26	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0123308_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0123308_27	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0123308_27	UniRef90	UniRef90_UPI00189F93C6	phage gp6-like head-tail connector protein	NA
UHGV-0123308_27	eggNOG-mapper	1122963.AUHB01000003_gene3979	Phage gp6-like head-tail connector protein	NA
UHGV-0123308_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0123308_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0123308_27	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0123308_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0123308_28	UniRef90	UniRef90_UPI0013E9AE26	phage major capsid protein	NA
UHGV-0123308_28	eggNOG-mapper	1433126.BN938_0523	Phage capsid family	NA
UHGV-0123308_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0123308_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0123308_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0123308_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0123308_29	KOfam	K06904	NA	NA
UHGV-0123308_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0123308_29	UniRef90	UniRef90_UPI00101D63F6	HK97 family phage prohead protease	NA
UHGV-0123308_29	eggNOG-mapper	1120971.AUCA01000066_gene594	Caudovirus prohead serine protease	NA
UHGV-0123308_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0123308_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0123308_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0123308_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0123308_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0123308_30	UniRef90	UniRef90_UPI001EDCC252	phage portal protein	NA
UHGV-0123308_30	eggNOG-mapper	742740.HMPREF9474_01214	Phage portal protein	NA
UHGV-0123308_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0123308_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0123308_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0123308_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0123308_31	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0123308_31	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0123308_31	UniRef90	UniRef90_UPI00037BCD11	DNA adenine methylase	NA
UHGV-0123308_31	eggNOG-mapper	1123058.KB894236_gene750	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0123308_31	PADLOC	MTase_II_00144	Type II methyltransferase	RM
UHGV-0123308_31	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0123308_31	COG	COG0338	DNA-adenine methylase	NA
UHGV-0123308_31	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0123308_32	PHROG	phrog_9592	NA	unknown function
UHGV-0123308_32	UniRef90	UniRef90_UPI001F312253	ParB/Srx family N-terminal domain-containing protein	NA
UHGV-0123308_32	eggNOG-mapper	553218.CAMRE0001_1256	chromosome segregation	NA
UHGV-0123308_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0123308_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0123308_32	Structural annotation	MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0123308_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0123308_34	UniRef90	UniRef90_UPI0018A05C8D	terminase large subunit	NA
UHGV-0123308_34	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-0123308_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0123308_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0123308_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0123308_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0123308_35	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0123308_35	UniRef90	UniRef90_A0A143XD88	Phage terminase, small subunit	NA
UHGV-0123308_35	eggNOG-mapper	1433126.BN938_0084	Phage terminase, small subunit	NA
UHGV-0123308_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0123308_35	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0123308_35	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0123308_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0123308_36	PHROG	phrog_11900	NA	unknown function
UHGV-0123308_36	UniRef90	UniRef90_A0A1Y4AJR8	Cell filamentation protein Fic	NA
UHGV-0123308_36	eggNOG-mapper	1235803.C825_01806	Fic/DOC family	NA
UHGV-0123308_36	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0123308_36	COG	COG3177	Fic family protein	NA
UHGV-0123308_36	Structural annotation	PF02661, PF12728, TIGR02613, TIGR01764, COG3177, COG3311	NA	NA
UHGV-0123308_37	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0123308_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0123308_37	UniRef90	UniRef90_UPI0013ED82B6	tyrosine-type recombinase/integrase	NA
UHGV-0123308_37	eggNOG-mapper	1433126.BN938_0085	Belongs to the 'phage' integrase family	NA
UHGV-0123308_37	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0123308_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123308_37	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0123308_37	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-0123308_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0123308_39	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0123308_39	UniRef90	UniRef90_UPI001B37FC83	ATP-binding protein	NA
UHGV-0123308_39	eggNOG-mapper	1158294.JOMI01000001_gene1619	NA	NA
UHGV-0123308_39	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0123308_40	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0123308_40	eggNOG-mapper	1121423.JONT01000053_gene2590	DnaD domain protein	NA
UHGV-0123308_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0123308_40	Structural annotation	PF01978, MF_01819, NF041230, COG3355	NA	NA
UHGV-0123308_42	UniRef90	UniRef90_UPI0013EA6218	RteC domain-containing protein	NA
UHGV-0123308_42	eggNOG-mapper	1501391.LG35_05580	RteC protein	NA
UHGV-0123308_42	Pfam	PF09357	RteC protein	RteC
UHGV-0123308_42	Structural annotation	PF09357	NA	NA