UHGV-0123492

Genome information

Genome length 18,802 bps

CDS count 24

Completeness 64.87% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123492
vOTU ID	vOTU-018512
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324504
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	64.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.05
Jumbo phage	No

Genome content
Genome length	18,802 bps
GC content	50.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	93.29%
Average CDS length	733.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123492_1	Structural annotation	PF17548	NA	NA
UHGV-0123492_2	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0123492_2	Structural annotation	PF17427	NA	NA
UHGV-0123492_5	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0123492_5	Structural annotation	PF03175, MF_04055, NF004419, COG0417	NA	NA
UHGV-0123492_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0123492_10	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0123492_10	eggNOG-mapper	1161906.I6P9K5_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0123492_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0123492_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0123492_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0123492_13	UniRef90	UniRef90_A6XAD5	Head protein	NA
UHGV-0123492_13	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0123492_13	Structural annotation	PF19821, PF07354, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0123492_14	PHROG	phrog_2248	tail protein	tail
UHGV-0123492_14	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0123492_14	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0123492_16	PHROG	phrog_2038	upper collar connector	connector
UHGV-0123492_16	UniRef90	UniRef90_A0A345BNP3	Upper collar protein	NA
UHGV-0123492_16	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0123492_16	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0123492_16	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0123492_18	PHROG	phrog_199	holin	lysis
UHGV-0123492_18	UniRef90	UniRef90_A0A4Q5BB08	Toxin secretion/phage lysis holin	NA
UHGV-0123492_18	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0123492_18	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0123492_18	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0123492_20	PHROG	phrog_13589	NA	unknown function
UHGV-0123492_21	KOfam	K07273	acm; lysozyme	NA
UHGV-0123492_21	PHROG	phrog_291	endolysin	lysis
UHGV-0123492_21	UniRef90	UniRef90_J9FII9	Glycoside hydrolase, family 25 (Fragment)	NA
UHGV-0123492_21	eggNOG-mapper	1329250.WOSG25_031550	Lyzozyme M1	NA
UHGV-0123492_21	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0123492_21	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0123492_21	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0123492_24	Structural annotation	PF17548	NA	NA