UHGV-0123504

Genome information

Genome length 39,923 bps

CDS count 44

Completeness 72.14% (medium-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123504
vOTU ID	vOTU-023048
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_333796
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.73
Jumbo phage	No

Genome content
Genome length	39,923 bps
GC content	44.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	89.87%
Average CDS length	820.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123504_7	PHROG	phrog_2277	NA	unknown function
UHGV-0123504_8	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0123504_8	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123504_8	UniRef90	UniRef90_UPI0019572E0D	HNH endonuclease	NA
UHGV-0123504_8	eggNOG-mapper	349123.Lreu23DRAFT_3152	HNH nucleases	NA
UHGV-0123504_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0123504_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0123504_8	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0123504_10	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0123504_10	UniRef90	UniRef90_B3XQ41	Phage terminase, small subunit, P27 family	NA
UHGV-0123504_10	eggNOG-mapper	349123.Lreu23DRAFT_3153	Phage terminase, small subunit	NA
UHGV-0123504_10	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0123504_10	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0123504_10	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0123504_10	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0123504_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0123504_11	UniRef90	UniRef90_A0A256VJ10	Terminase	NA
UHGV-0123504_11	eggNOG-mapper	1423758.BN55_09480	Phage Terminase	NA
UHGV-0123504_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0123504_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0123504_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0123504_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0123504_12	UniRef90	UniRef90_UPI0011059D53	transmembrane Fragile-X-F protein	NA
UHGV-0123504_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0123504_13	UniRef90	UniRef90_UPI001E45FC8D	phage portal protein	NA
UHGV-0123504_13	eggNOG-mapper	349123.Lreu23DRAFT_3157	portal protein	NA
UHGV-0123504_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0123504_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0123504_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0123504_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0123504_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0123504_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0123504_14	UniRef90	UniRef90_B3XQ46	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0123504_14	eggNOG-mapper	349123.Lreu23DRAFT_3158	Belongs to the peptidase S14 family	NA
UHGV-0123504_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0123504_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0123504_14	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0123504_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0123504_15	UniRef90	UniRef90_B3XQ47	Major capsid protein HK97	NA
UHGV-0123504_15	eggNOG-mapper	349123.Lreu23DRAFT_3159	Phage capsid family	NA
UHGV-0123504_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0123504_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0123504_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0123504_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0123504_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0123504_16	UniRef90	UniRef90_UPI001E3F21A6	head-tail connector protein	NA
UHGV-0123504_16	eggNOG-mapper	349123.Lreu23DRAFT_3161	Phage gp6-like head-tail connector protein	NA
UHGV-0123504_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0123504_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0123504_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-0123504_17	UniRef90	UniRef90_B3XQ50	Phage head-tail adaptor	NA
UHGV-0123504_17	eggNOG-mapper	349123.Lreu23DRAFT_3162	Phage head-tail joining protein	NA
UHGV-0123504_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0123504_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0123504_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0123504_18	UniRef90	UniRef90_A0A5R9BSQ8	Phage tail protein	NA
UHGV-0123504_18	eggNOG-mapper	349123.Lreu23DRAFT_3163	NA	NA
UHGV-0123504_18	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-0123504_19	PHROG	phrog_1217	tail protein	tail
UHGV-0123504_19	UniRef90	UniRef90_UPI000C798994	NA	NA
UHGV-0123504_19	eggNOG-mapper	349123.Lreu23DRAFT_3164	NA	NA
UHGV-0123504_19	Structural annotation	PF05657	NA	NA
UHGV-0123504_20	PHROG	phrog_88	major tail protein	tail
UHGV-0123504_20	UniRef90	UniRef90_UPI001C39E78D	Phage tail protein	NA
UHGV-0123504_20	eggNOG-mapper	349123.Lreu23DRAFT_3165	Phage tail tube protein	NA
UHGV-0123504_20	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0123504_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0123504_21	PHROG	phrog_26915	NA	unknown function
UHGV-0123504_21	eggNOG-mapper	349123.Lreu23DRAFT_3166	NA	NA
UHGV-0123504_21	Structural annotation	PF06896	NA	NA
UHGV-0123504_22	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0123504_22	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0123504_22	UniRef90	UniRef90_B3XQ55	Phage tail tape measure protein, TP901 family	NA
UHGV-0123504_22	eggNOG-mapper	349123.Lreu23DRAFT_3167	Phage tail tape measure protein TP901	NA
UHGV-0123504_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0123504_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0123504_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0123504_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0123504_23	UniRef90	UniRef90_UPI001C3B50F2	Phage tail family protein	NA
UHGV-0123504_23	eggNOG-mapper	349123.Lreu23DRAFT_3168	Phage tail protein	NA
UHGV-0123504_23	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0123504_23	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0123504_24	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0123504_24	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0123504_24	UniRef90	UniRef90_UPI001C398E2E	Phage tail protein	NA
UHGV-0123504_24	eggNOG-mapper	349123.Lreu23DRAFT_3169	Prophage endopeptidase tail	NA
UHGV-0123504_24	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0123504_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0123504_24	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0123504_24	Structural annotation	PF06605, PF18994, TIGR01665, COG3500, COG3953	NA	NA
UHGV-0123504_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0123504_25	PHROG	phrog_291	endolysin	lysis
UHGV-0123504_25	UniRef90	UniRef90_A0A0R1WF61	Glycosyl hydrolase family 25	NA
UHGV-0123504_25	eggNOG-mapper	525309.HMPREF0494_1766	NA	NA
UHGV-0123504_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0123504_26	PHROG	phrog_25979	NA	unknown function
UHGV-0123504_27	eggNOG-mapper	1423814.HMPREF0549_1800	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0123504_28	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0123504_28	UniRef90	UniRef90_C8P8W9	BppU_N domain-containing protein	NA
UHGV-0123504_28	eggNOG-mapper	525309.HMPREF0494_1763	NA	NA
UHGV-0123504_28	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0123504_28	Structural annotation	PF10651, TIGR03503	NA	NA
UHGV-0123504_30	eggNOG-mapper	1423814.HMPREF0549_1803	NA	NA
UHGV-0123504_33	PHROG	phrog_4440	tail fiber protein	tail
UHGV-0123504_33	eggNOG-mapper	1423780.LOT_2170	NA	NA
UHGV-0123504_34	PHROG	phrog_11342	NA	unknown function
UHGV-0123504_35	UniRef90	UniRef90_A0A5P0ZGQ9	NA	NA
UHGV-0123504_36	PHROG	phrog_2609	holin	lysis
UHGV-0123504_36	UniRef90	UniRef90_UPI001883E0B7	phage holin, LLH family	NA
UHGV-0123504_36	eggNOG-mapper	525309.HMPREF0494_1756	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0123504_36	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0123504_36	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0123504_37	KOfam	K07273	acm; lysozyme	NA
UHGV-0123504_37	PHROG	phrog_35916	NA	unknown function
UHGV-0123504_37	UniRef90	UniRef90_UPI0018833EA9	gametolysin	NA
UHGV-0123504_37	eggNOG-mapper	944562.HMPREF9102_0432	Glycosyl hydrolases family 25	NA
UHGV-0123504_37	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0123504_37	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0123504_37	Structural annotation	PF01183, PF03370, NF007404, COG3757, COG5456	NA	NA
UHGV-0123504_38	UniRef90	UniRef90_E3C8D6	LPXTG-motif cell wall anchor domain protein	NA
UHGV-0123504_38	eggNOG-mapper	944562.HMPREF9102_0633	LPXTG-motif cell wall anchor domain protein	NA
UHGV-0123504_39	KOfam	K03293	TC.AAT; amino acid transporter, AAT family	NA
UHGV-0123504_39	UniRef90	UniRef90_C8P8E5	Amino acid permease	NA
UHGV-0123504_39	eggNOG-mapper	908339.HMPREF9265_0029	Amino acid permease	NA
UHGV-0123504_39	Pfam	PF00324	Amino acid permease	AA_permease
UHGV-0123504_39	COG	COG1113	L-asparagine transporter or related permease	NA
UHGV-0123504_40	KOfam	K15051	endA; DNA-entry nuclease	NA
UHGV-0123504_40	PHROG	phrog_5170	NA	unknown function
UHGV-0123504_40	UniRef90	UniRef90_A0A0R1WG35	DNA RNA non-specific endonuclease	NA
UHGV-0123504_40	eggNOG-mapper	908339.HMPREF9265_0028	DNA RNA non-specific endonuclease	NA
UHGV-0123504_40	Pfam	PF01223	DNA/RNA non-specific endonuclease	Endonuclease_NS
UHGV-0123504_40	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0123504_41	UniRef90	UniRef90_UPI001C3BFF24	ATP-binding protein	NA
UHGV-0123504_41	eggNOG-mapper	908339.HMPREF9265_0025	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol	NA
UHGV-0123504_41	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0123504_42	UniRef90	UniRef90_A0A0R1XSZ3	Lipoprotein	NA
UHGV-0123504_42	eggNOG-mapper	908339.HMPREF9265_0024	NA	NA
UHGV-0123504_42	Pfam	PF06028	NA	DUF915
UHGV-0123504_42	COG	COG4814	NA	NA
UHGV-0123504_43	eggNOG-mapper	908339.HMPREF9265_0023	NA	NA
UHGV-0123504_44	KOfam	K08728	E2.4.2.6; nucleoside deoxyribosyltransferase [EC:2.4.2.6]	NA
UHGV-0123504_44	PHROG	phrog_7995	nucleoside deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0123504_44	UniRef90	UniRef90_C8P8G1	Nucleoside deoxyribosyltransferase	NA
UHGV-0123504_44	eggNOG-mapper	908339.HMPREF9265_0022	Nucleoside	NA
UHGV-0123504_44	Pfam	PF05014	Nucleoside 2-deoxyribosyltransferase	Nuc_deoxyrib_tr
UHGV-0123504_44	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0123504_44	Structural annotation	PF05014, MF_03036, TIGR03646, COG3613	NA	NA