UHGV-0123541

Genome information

Genome length 47,428 bps

CDS count 76

Completeness 81.79% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123541
vOTU ID	vOTU-026257
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_313731
BioSample	SAMEA4370583
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.91
Jumbo phage	No

Genome content
Genome length	47,428 bps
GC content	44.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	90.11%
Average CDS length	565.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123541_1	UniRef90	UniRef90_UPI001295FF99	NA	NA
UHGV-0123541_1	eggNOG-mapper	411479.BACUNI_00039	NA	NA
UHGV-0123541_1	Pfam	PF10387	NA	DUF2442
UHGV-0123541_1	Structural annotation	PF10387, PF13560, NF041951, COG3655	NA	NA
UHGV-0123541_2	PHROG	phrog_6305	tail protein	tail
UHGV-0123541_2	eggNOG-mapper	445970.ALIPUT_00695	NA	NA
UHGV-0123541_2	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-0123541_3	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0123541_3	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0123541_3	UniRef90	UniRef90_UPI001297521A	tape measure protein	NA
UHGV-0123541_3	eggNOG-mapper	445970.ALIPUT_00696	NA	NA
UHGV-0123541_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0123541_3	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0123541_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0123541_3	Structural annotation	PF20155	NA	NA
UHGV-0123541_4	Structural annotation	PF20336	NA	NA
UHGV-0123541_5	PHROG	phrog_6767	NA	unknown function
UHGV-0123541_5	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0123541_6	PHROG	phrog_5597	NA	unknown function
UHGV-0123541_6	Structural annotation	PF05657	NA	NA
UHGV-0123541_7	PHROG	phrog_5377	NA	unknown function
UHGV-0123541_7	UniRef90	UniRef90_UPI0008DA4DD0	HK97 gp10 family phage protein	NA
UHGV-0123541_7	eggNOG-mapper	445970.ALIPUT_00701	NA	NA
UHGV-0123541_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0123541_8	PHROG	phrog_13251	NA	unknown function
UHGV-0123541_8	eggNOG-mapper	525257.HMPREF0204_11355	NA	NA
UHGV-0123541_8	Structural annotation	PF20536	NA	NA
UHGV-0123541_9	PHROG	phrog_16646	NA	unknown function
UHGV-0123541_9	eggNOG-mapper	411477.PARMER_01697	NA	NA
UHGV-0123541_9	Pfam	PF20449	NA	DUF6706
UHGV-0123541_9	Structural annotation	PF20449	NA	NA
UHGV-0123541_10	PHROG	phrog_29	major head protein	head and packaging
UHGV-0123541_10	UniRef90	UniRef90_UPI0008D9EBC9	major capsid protein	NA
UHGV-0123541_10	eggNOG-mapper	742767.HMPREF9456_03319	NA	NA
UHGV-0123541_10	Structural annotation	PF03864, MF_04133	NA	NA
UHGV-0123541_11	PHROG	phrog_9196	NA	unknown function
UHGV-0123541_11	UniRef90	UniRef90_UPI0012969B58	head fiber protein	NA
UHGV-0123541_11	eggNOG-mapper	762968.HMPREF9441_00578	Head fiber protein	NA
UHGV-0123541_11	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0123541_11	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0123541_12	PHROG	phrog_5824	NA	unknown function
UHGV-0123541_12	eggNOG-mapper	762968.HMPREF9441_00579	NA	NA
UHGV-0123541_14	Structural annotation	PF11320	NA	NA
UHGV-0123541_17	PHROG	phrog_1086	NA	unknown function
UHGV-0123541_17	UniRef90	UniRef90_A0A316PBT4	NA	NA
UHGV-0123541_17	eggNOG-mapper	445970.ALIPUT_01200	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-0123541_17	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0123541_17	Structural annotation	PF10902	NA	NA
UHGV-0123541_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0123541_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0123541_18	UniRef90	UniRef90_UPI001562152E	phage antirepressor KilAC domain-containing protein	NA
UHGV-0123541_18	eggNOG-mapper	679190.HMPREF0650_0366	KilA-N domain	NA
UHGV-0123541_18	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0123541_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0123541_18	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0123541_18	Structural annotation	PF03374, PF04383, COG3645	NA	NA
UHGV-0123541_19	PHROG	phrog_35295	NA	unknown function
UHGV-0123541_19	UniRef90	UniRef90_A0A143XJU3	LPD3 domain-containing protein	NA
UHGV-0123541_19	eggNOG-mapper	445970.ALIPUT_01191	NA	NA
UHGV-0123541_19	Structural annotation	PF06152	NA	NA
UHGV-0123541_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0123541_20	UniRef90	UniRef90_UPI001294C0B3	phage portal protein	NA
UHGV-0123541_20	eggNOG-mapper	742767.HMPREF9456_03336	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0123541_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0123541_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0123541_21	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0123541_21	UniRef90	UniRef90_A0A5B5VJH5	Phage terminase large subunit	NA
UHGV-0123541_21	eggNOG-mapper	742767.HMPREF9456_03337	domain protein	NA
UHGV-0123541_21	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0123541_21	COG	COG5410	NA	NA
UHGV-0123541_21	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0123541_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0123541_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0123541_22	UniRef90	UniRef90_A0A396MF89	Terminase small subunit	NA
UHGV-0123541_22	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-0123541_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0123541_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0123541_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0123541_23	eggNOG-mapper	762968.HMPREF9441_00548	NA	NA
UHGV-0123541_25	UniRef90	UniRef90_A0A8D9PFB4	Peptidase M76 family	NA
UHGV-0123541_25	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0123541_28	PHROG	phrog_38431	NA	unknown function
UHGV-0123541_28	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0123541_28	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0123541_30	PHROG	phrog_28898	NA	unknown function
UHGV-0123541_30	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-0123541_30	Structural annotation	PF10781	NA	NA
UHGV-0123541_32	PHROG	phrog_16490	NA	unknown function
UHGV-0123541_32	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0123541_32	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0123541_33	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0123541_33	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0123541_33	UniRef90	UniRef90_A0A316P7H5	Phage antirepressor	NA
UHGV-0123541_33	eggNOG-mapper	1268240.ATFI01000013_gene1236	BRO family, N-terminal domain	NA
UHGV-0123541_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0123541_33	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0123541_33	COG	COG3617	Prophage antirepressor	NA
UHGV-0123541_33	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0123541_34	PHROG	phrog_2977	anti-repressor	transcription regulation
UHGV-0123541_34	UniRef90	UniRef90_A0A7X7VRE5	Bro-N domain-containing protein (Fragment)	NA
UHGV-0123541_34	eggNOG-mapper	1268240.ATFI01000013_gene1236	BRO family, N-terminal domain	NA
UHGV-0123541_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0123541_34	COG	COG3617	Prophage antirepressor	NA
UHGV-0123541_36	UniRef90	UniRef90_UPI001052004B	prevent-host-death protein	NA
UHGV-0123541_36	eggNOG-mapper	1347393.HG726026_gene2589	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0123541_39	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0123541_39	UniRef90	UniRef90_A0A143XLQ7	Bro-N domain-containing protein	NA
UHGV-0123541_39	eggNOG-mapper	1582149.A0A0A8WIE3_9CAUD	DNA binding	NA
UHGV-0123541_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0123541_39	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0123541_41	UniRef90	UniRef90_A0A396MB02	Lytic transglycosylase domain-containing protein	NA
UHGV-0123541_41	eggNOG-mapper	1122990.BAJH01000025_gene2375	lytic transglycosylase activity	NA
UHGV-0123541_41	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0123541_41	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0123541_42	eggNOG-mapper	742727.HMPREF9447_04886	NA	NA
UHGV-0123541_44	UniRef90	UniRef90_UPI00129564E1	NA	NA
UHGV-0123541_45	PHROG	phrog_874	NA	unknown function
UHGV-0123541_45	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0123541_45	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0123541_46	Structural annotation	PF17457	NA	NA
UHGV-0123541_47	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0123541_49	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0123541_49	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0123541_49	UniRef90	UniRef90_A0A6I2NIA6	Methyltransferase	NA
UHGV-0123541_49	eggNOG-mapper	1166018.FAES_1810	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0123541_49	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-0123541_49	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0123541_49	COG	COG0863	DNA modification methylase	NA
UHGV-0123541_49	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0123541_50	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0123541_50	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0123541_50	UniRef90	UniRef90_UPI0012963B3A	DNA cytosine methyltransferase	NA
UHGV-0123541_50	eggNOG-mapper	445970.ALIPUT_00030	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0123541_50	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0123541_50	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0123541_50	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0123541_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0123541_50	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0123541_51	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0123541_51	eggNOG-mapper	449673.BACSTE_02198	NA	NA
UHGV-0123541_51	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-0123541_52	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0123541_52	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0123541_52	UniRef90	UniRef90_A0A396MBI3	Toprim domain-containing protein	NA
UHGV-0123541_52	eggNOG-mapper	742725.HMPREF9450_00879	NA	NA
UHGV-0123541_52	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0123541_52	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0123541_52	COG	COG0305	Replicative DNA helicase	NA
UHGV-0123541_52	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0123541_53	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0123541_53	UniRef90	UniRef90_UPI000C291231	DnaT-like ssDNA-binding domain-containing protein	NA
UHGV-0123541_53	eggNOG-mapper	1123248.KB893341_gene827	NA	NA
UHGV-0123541_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0123541_56	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0123541_56	eggNOG-mapper	1121100.JCM6294_522	NA	NA
UHGV-0123541_56	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0123541_57	PHROG	phrog_24909	NA	unknown function
UHGV-0123541_57	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0123541_59	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0123541_59	UniRef90	UniRef90_A0A396M384	ERF superfamily protein	NA
UHGV-0123541_59	eggNOG-mapper	926554.KI912633_gene3655	Erf family	NA
UHGV-0123541_59	Pfam	PF04404	ERF superfamily	ERF
UHGV-0123541_59	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0123541_61	eggNOG-mapper	102125.Xen7305DRAFT_00008360	Leucine-rich repeat (LRR) protein	NA
UHGV-0123541_61	Pfam	PF20530	NA	DUF6745
UHGV-0123541_61	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0123541_61	Structural annotation	PF20530	NA	NA
UHGV-0123541_68	Structural annotation	PF13973, PF17384, COG1862	NA	NA
UHGV-0123541_70	KOfam	K11618	liaR; two-component system, NarL family, response regulator LiaR	NA
UHGV-0123541_70	UniRef90	UniRef90_A0A396M3W3	LuxR family transcriptional regulator	NA
UHGV-0123541_70	eggNOG-mapper	1235803.C825_03381	helix_turn_helix, Lux Regulon	NA
UHGV-0123541_70	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0123541_71	eggNOG-mapper	1284775.HMPREF1640_07290	NA	NA
UHGV-0123541_71	Structural annotation	PF19555	NA	NA
UHGV-0123541_72	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0123541_72	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0123541_72	UniRef90	UniRef90_UPI001561F3B8	helix-turn-helix domain-containing protein	NA
UHGV-0123541_72	eggNOG-mapper	908612.HMPREF9720_2450	NA	NA
UHGV-0123541_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123541_74	UniRef90	UniRef90_A0A396MAY4	NA	NA
UHGV-0123541_74	Pfam	PF18929	NA	DUF5678
UHGV-0123541_74	Structural annotation	PF18929	NA	NA
UHGV-0123541_75	UniRef90	UniRef90_A0A5S5DQT9	SEC-C motif-containing protein	NA
UHGV-0123541_75	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-0123541_75	COG	COG3577	Predicted aspartyl protease	NA
UHGV-0123541_75	Structural annotation	PF13650, TIGR03698, COG5550	NA	NA
UHGV-0123541_76	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0123541_76	PHROG	phrog_1	integrase	integration and excision
UHGV-0123541_76	UniRef90	UniRef90_A0A396M6I3	Site-specific integrase	NA
UHGV-0123541_76	eggNOG-mapper	1033732.CAHI01000014_gene290	Belongs to the 'phage' integrase family	NA
UHGV-0123541_76	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0123541_76	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0123541_76	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123541_76	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0123541_76	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA