UHGV-0123578

Genome information

vOTU vOTU-031984

Genome length 35,956 bps

CDS count 59

Completeness 85.50% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123578
vOTU ID	vOTU-031984
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_319061
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.76
Jumbo phage	No

Genome content
Genome length	35,956 bps
GC content	52.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.13%
Average CDS length	560.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123578_1	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123578_1	UniRef90	UniRef90_A0A2J9EA12	Fis family transcriptional regulator	NA
UHGV-0123578_1	eggNOG-mapper	571.MC52_14955	HNH endonuclease	NA
UHGV-0123578_1	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0123578_1	Pfam	PF00847	AP2 domain	AP2
UHGV-0123578_1	Structural annotation	PF13392, PF00847	NA	NA
UHGV-0123578_2	PHROG	phrog_271	anti-termination protein N-like	transcription regulation
UHGV-0123578_2	UniRef90	UniRef90_UPI0011421A5B	antitermination protein N	NA
UHGV-0123578_4	PHROG	phrog_19071	NA	unknown function
UHGV-0123578_4	UniRef90	UniRef90_A0A067H892	NA	NA
UHGV-0123578_4	eggNOG-mapper	598467.BrE312_3314	NA	NA
UHGV-0123578_4	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0123578_5	PHROG	phrog_1281	NA	unknown function
UHGV-0123578_5	UniRef90	UniRef90_A0A2J9E9Z9	NA	NA
UHGV-0123578_5	eggNOG-mapper	598467.BrE312_3313	NA	NA
UHGV-0123578_5	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0123578_5	COG	COG3600	NA	NA
UHGV-0123578_5	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0123578_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0123578_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0123578_6	UniRef90	UniRef90_A0A1X1C2N4	Repressor	NA
UHGV-0123578_6	eggNOG-mapper	1225184.ALXE01000018_gene3860	Peptidase S24-like	NA
UHGV-0123578_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0123578_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0123578_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0123578_6	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0123578_7	UniRef90	UniRef90_A0A3N4PTZ7	XRE family transcriptional regulator	NA
UHGV-0123578_7	eggNOG-mapper	1115512.EH105704_01_02650	Helix-turn-helix XRE-family like proteins	NA
UHGV-0123578_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123578_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0123578_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0123578_8	PHROG	phrog_191	CII-like transcriptional activator	transcription regulation
UHGV-0123578_8	UniRef90	UniRef90_A0A839W7M7	Hexokinase	NA
UHGV-0123578_8	eggNOG-mapper	1115512.EH105704_01_02640	Bacteriophage CII protein	NA
UHGV-0123578_8	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0123578_8	Structural annotation	PF05269	NA	NA
UHGV-0123578_9	eggNOG-mapper	911008.GLAD_00738	NA	NA
UHGV-0123578_10	PHROG	phrog_2519	NA	unknown function
UHGV-0123578_11	PHROG	phrog_18589	NA	unknown function
UHGV-0123578_11	UniRef90	UniRef90_A0A2J9E9U4	Replication protein	NA
UHGV-0123578_11	eggNOG-mapper	1115512.EH105704_01_02620	Protein involved in DNA replication initiation, regulation of DNA replication, viral process and DNA replication	NA
UHGV-0123578_11	COG	COG3756	NA	NA
UHGV-0123578_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0123578_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0123578_12	UniRef90	UniRef90_A0A2J9E9W4	DNA helicase	NA
UHGV-0123578_12	eggNOG-mapper	716541.ECL_03583	DnaB-like helicase N terminal domain	NA
UHGV-0123578_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0123578_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0123578_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-0123578_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0123578_13	PHROG	phrog_34180	NA	unknown function
UHGV-0123578_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0123578_19	UniRef90	UniRef90_UPI001EF3FECF	recombination protein NinB	NA
UHGV-0123578_19	eggNOG-mapper	932213.SPM24T3_13915	NinB protein	NA
UHGV-0123578_19	Pfam	PF05772	NinB protein	NinB
UHGV-0123578_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0123578_21	PHROG	phrog_12906	NA	unknown function
UHGV-0123578_23	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-0123578_23	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123578_23	UniRef90	UniRef90_A0A7X5MK63	Serine/threonine-protein phosphatase	NA
UHGV-0123578_23	eggNOG-mapper	932213.SPM24T3_13905	COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases	NA
UHGV-0123578_23	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0123578_23	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-0123578_23	Structural annotation	PF12850, MF_01443, NF007425, COG0622	NA	NA
UHGV-0123578_24	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123578_24	UniRef90	UniRef90_I0QRU2	Putative ninG protein	NA
UHGV-0123578_24	eggNOG-mapper	932213.SPM24T3_13900	Bacteriophage Lambda NinG protein	NA
UHGV-0123578_24	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0123578_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0123578_24	Structural annotation	PF05766	NA	NA
UHGV-0123578_25	UniRef90	UniRef90_A0A7X5MK80	YlcG family protein	NA
UHGV-0123578_25	NCBIFam	NF033498.1	YlcG family protein	NA
UHGV-0123578_26	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0123578_26	eggNOG-mapper	1484157.PSNIH2_13445	NA	NA
UHGV-0123578_26	Structural annotation	PF06576	NA	NA
UHGV-0123578_27	PHROG	phrog_20	holin	lysis
UHGV-0123578_27	UniRef90	UniRef90_UPI0007CC4CDB	phage holin family protein	NA
UHGV-0123578_27	eggNOG-mapper	1282876.BAOK01000001_gene3111	to Serratia marcescens phage-holin analog protein regA SWALL Q54422 (EMBL U31763) (88 aa) fasta scores E()	NA
UHGV-0123578_27	Pfam	PF16080	Bacteriophage holin family HP1	Phage_holin_2_3
UHGV-0123578_28	PHROG	phrog_33534	NA	unknown function
UHGV-0123578_28	UniRef90	UniRef90_A0A7U4TA07	Lysozyme	NA
UHGV-0123578_28	eggNOG-mapper	1484158.PSNIH1_00545	lysozyme	NA
UHGV-0123578_28	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0123578_28	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0123578_28	Structural annotation	MF_04110, COG3772	NA	NA
UHGV-0123578_29	PHROG	phrog_1356	holin	lysis
UHGV-0123578_29	UniRef90	UniRef90_W0HVW7	Phage holin protein	NA
UHGV-0123578_29	eggNOG-mapper	1484157.PSNIH2_13435	NA	NA
UHGV-0123578_30	eggNOG-mapper	1484157.PSNIH2_13430	NA	NA
UHGV-0123578_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0123578_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0123578_32	UniRef90	UniRef90_A0A3C0H4X3	Terminase small subunit	NA
UHGV-0123578_32	eggNOG-mapper	1484158.PSNIH1_00495	Terminase small subunit	NA
UHGV-0123578_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0123578_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0123578_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0123578_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0123578_33	UniRef90	UniRef90_A0A3C0H5A0	TerL protein	NA
UHGV-0123578_33	eggNOG-mapper	1397284.AYMN01000072_gene4077	Mu-like prophage FluMu protein gp28	NA
UHGV-0123578_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0123578_33	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0123578_34	KOfam	K09961	NA	NA
UHGV-0123578_34	PHROG	phrog_146	portal protein	head and packaging
UHGV-0123578_34	UniRef90	UniRef90_K8DVR3	NA	NA
UHGV-0123578_34	eggNOG-mapper	633.DJ40_3631	NA	NA
UHGV-0123578_34	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0123578_34	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0123578_34	COG	COG3567	NA	NA
UHGV-0123578_34	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0123578_35	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0123578_35	UniRef90	UniRef90_A0A1V9DJ85	Phage head morphogenesis protein	NA
UHGV-0123578_35	eggNOG-mapper	349966.DJ58_4438	phageSPP1_gp7 phage head morphogenesis , SPP1 gp7 family domain protein	NA
UHGV-0123578_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0123578_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0123578_35	COG	COG2369	NA	NA
UHGV-0123578_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0123578_36	KOfam	K09960	NA	NA
UHGV-0123578_36	PHROG	phrog_1961	NA	unknown function
UHGV-0123578_36	UniRef90	UniRef90_K8DVH8	Putative bacteriophage protein	NA
UHGV-0123578_36	eggNOG-mapper	349966.DJ58_4437	NA	NA
UHGV-0123578_36	Pfam	PF09979	NA	DUF2213
UHGV-0123578_36	COG	COG3566	NA	NA
UHGV-0123578_36	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0123578_37	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0123578_37	UniRef90	UniRef90_K8DWF0	NA	NA
UHGV-0123578_37	eggNOG-mapper	349966.DJ58_4436	NA	NA
UHGV-0123578_37	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0123578_38	PHROG	phrog_264	major head protein	head and packaging
UHGV-0123578_38	UniRef90	UniRef90_K8DVL3	NA	NA
UHGV-0123578_38	eggNOG-mapper	220341.16502206	NA	NA
UHGV-0123578_38	Pfam	PF09950	NA	DUF2184
UHGV-0123578_38	COG	COG4834	NA	NA
UHGV-0123578_38	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0123578_39	PHROG	phrog_2619	NA	unknown function
UHGV-0123578_39	UniRef90	UniRef90_K8DVR2	Putative bacteriophage protein	NA
UHGV-0123578_39	Pfam	PF05859	Mis12 protein	Mis12
UHGV-0123578_39	Structural annotation	PF20873	NA	NA
UHGV-0123578_40	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0123578_40	UniRef90	UniRef90_K8DW16	NA	NA
UHGV-0123578_40	eggNOG-mapper	349966.DJ58_4433	NA	NA
UHGV-0123578_40	Pfam	PF13262	NA	DUF4054
UHGV-0123578_40	Structural annotation	PF13262	NA	NA
UHGV-0123578_41	PHROG	phrog_222	tail protein	tail
UHGV-0123578_41	UniRef90	UniRef90_K8DVH7	NA	NA
UHGV-0123578_41	eggNOG-mapper	220341.16502209	NA	NA
UHGV-0123578_42	PHROG	phrog_939	head protein	head and packaging
UHGV-0123578_42	UniRef90	UniRef90_A0A2P5IL14	Head-tail adaptor	NA
UHGV-0123578_42	eggNOG-mapper	104623.Ser39006_04156	NA	NA
UHGV-0123578_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0123578_43	PHROG	phrog_1973	NA	unknown function
UHGV-0123578_43	UniRef90	UniRef90_K8DVL2	NA	NA
UHGV-0123578_43	eggNOG-mapper	349966.DJ58_4430	NA	NA
UHGV-0123578_43	Structural annotation	PF09646	NA	NA
UHGV-0123578_44	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0123578_44	UniRef90	UniRef90_UPI0017830017	NA	NA
UHGV-0123578_44	eggNOG-mapper	712898.Pvag_1699	NA	NA
UHGV-0123578_44	Pfam	PF11863	NA	DUF3383
UHGV-0123578_44	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0123578_45	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0123578_45	UniRef90	UniRef90_A0A8I0LJC0	NA	NA
UHGV-0123578_45	eggNOG-mapper	741091.Rahaq_5003	NA	NA
UHGV-0123578_45	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0123578_45	Structural annotation	PF11681, TIGR02126, COG5437	NA	NA
UHGV-0123578_46	PHROG	phrog_1688	tail assembly chaperone	tail
UHGV-0123578_46	UniRef90	UniRef90_K8DVH6	Putative bacteriophage protein	NA
UHGV-0123578_46	eggNOG-mapper	741091.Rahaq_5004	NA	NA
UHGV-0123578_46	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0123578_46	Structural annotation	PF21822	NA	NA
UHGV-0123578_47	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0123578_47	UniRef90	UniRef90_A0A1V9DJH9	Peptidoglycan lytic exotransglycosylase	NA
UHGV-0123578_47	eggNOG-mapper	220341.16502215	Belongs to the WXG100 family	NA
UHGV-0123578_47	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0123578_47	Structural annotation	PF01464, PF10145, MF_01381, NF008050, TIGR01760, COG0741	NA	NA
UHGV-0123578_48	PHROG	phrog_817	tail fiber protein	tail
UHGV-0123578_48	UniRef90	UniRef90_A0A0H3FJT3	Putative bacteriophage protein	NA
UHGV-0123578_48	eggNOG-mapper	741091.Rahaq_5006	NA	NA
UHGV-0123578_48	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0123578_48	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0123578_49	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0123578_49	UniRef90	UniRef90_A0A8G2A391	Bacteriophage protein	NA
UHGV-0123578_49	eggNOG-mapper	1115515.EV102420_14_01200	NA	NA
UHGV-0123578_50	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0123578_50	UniRef90	UniRef90_F4T249	Putative bacteriophage protein	NA
UHGV-0123578_50	eggNOG-mapper	220341.16503063	NA	NA
UHGV-0123578_50	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0123578_51	PHROG	phrog_3443	NA	unknown function
UHGV-0123578_51	eggNOG-mapper	220341.16503062	NA	NA
UHGV-0123578_52	PHROG	phrog_6315	NA	unknown function
UHGV-0123578_52	eggNOG-mapper	1443113.LC20_01734	NA	NA
UHGV-0123578_52	Structural annotation	PF18186, NF033632	NA	NA
UHGV-0123578_53	UniRef90	UniRef90_A0A1V9DJB1	Translation initiation factor IF-2	NA
UHGV-0123578_53	eggNOG-mapper	1076550.LH22_17130	Baseplate assembly protein	NA
UHGV-0123578_53	Pfam	PF18352	NA	Gp138_N
UHGV-0123578_53	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0123578_53	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-0123578_54	PHROG	phrog_120	baseplate protein	tail
UHGV-0123578_54	UniRef90	UniRef90_K8DVL0	Putative bacteriophage protein	NA
UHGV-0123578_54	eggNOG-mapper	1076550.LH22_17125	NA	NA
UHGV-0123578_54	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0123578_55	PHROG	phrog_6	baseplate protein	tail
UHGV-0123578_55	UniRef90	UniRef90_A0A1V9DJG2	Baseplate_J domain-containing protein	NA
UHGV-0123578_55	eggNOG-mapper	399742.Ent638_0817	Baseplate J-like protein	NA
UHGV-0123578_55	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0123578_55	COG	COG3299	NA	NA
UHGV-0123578_55	Structural annotation	PF03434, PF21379, PF21110, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0123578_56	PHROG	phrog_587	structural protein	head and packaging
UHGV-0123578_56	UniRef90	UniRef90_A0A2P5IL12	NA	NA
UHGV-0123578_56	eggNOG-mapper	104623.Ser39006_04141	NA	NA
UHGV-0123578_56	Pfam	PF11041	NA	DUF2612
UHGV-0123578_56	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0123578_57	PHROG	phrog_11303	tail fiber protein	tail
UHGV-0123578_57	eggNOG-mapper	1005994.GTGU_04660	tail collar domain protein	NA
UHGV-0123578_57	COG	COG4675	Phage tail collar domain	NA
UHGV-0123578_57	Structural annotation	PF21722	NA	NA
UHGV-0123578_58	UniRef90	UniRef90_D8N871	Putative bacteriophage protein Bcep1	NA
UHGV-0123578_59	KOfam	K16568	exoZ; exopolysaccharide production protein ExoZ	NA
UHGV-0123578_59	PHROG	phrog_3333	O-acetyltransferase	other
UHGV-0123578_59	UniRef90	UniRef90_A0A831A2M5	O-acetyltransferase	NA
UHGV-0123578_59	eggNOG-mapper	665029.EAMY_2328	transferase activity, transferring acyl groups other than amino-acyl groups	NA
UHGV-0123578_59	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0123578_59	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0123578_59	Structural annotation	PF01757, MF_01066, NF042426, COG1835	NA	NA