UHGV-0123697

Genome information

Genome length 29,352 bps

CDS count 42

Completeness 74.52% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123697
vOTU ID	vOTU-023152
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_329081
BioSample	SAMN00993240
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.04
Jumbo phage	No

Genome content
Genome length	29,352 bps
GC content	47.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.41%
Average CDS length	648.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123697_1	PHROG	phrog_22762	NA	unknown function
UHGV-0123697_1	UniRef90	UniRef90_A0A7U9XCB8	Putative nuclease YhcG	NA
UHGV-0123697_1	eggNOG-mapper	411902.CLOBOL_00113	NA	NA
UHGV-0123697_1	Pfam	PF17761	NA	DUF1016_N
UHGV-0123697_1	COG	COG4804	NA	NA
UHGV-0123697_2	eggNOG-mapper	411902.CLOBOL_00114	NA	NA
UHGV-0123697_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0123697_3	PHROG	phrog_291	endolysin	lysis
UHGV-0123697_3	UniRef90	UniRef90_UPI001D026E2B	peptidoglycan-binding protein	NA
UHGV-0123697_3	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0123697_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0123697_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0123697_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0123697_3	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0123697_4	PHROG	phrog_199	holin	lysis
UHGV-0123697_4	UniRef90	UniRef90_UPI001D025742	phage holin family protein	NA
UHGV-0123697_4	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0123697_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0123697_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0123697_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0123697_5	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0123697_5	PHROG	phrog_819	tail protein	tail
UHGV-0123697_5	UniRef90	UniRef90_A0A7G5N2U2	Collagen-like protein	NA
UHGV-0123697_5	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0123697_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0123697_5	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0123697_6	PHROG	phrog_16164	NA	unknown function
UHGV-0123697_6	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0123697_6	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0123697_7	eggNOG-mapper	742733.HMPREF9469_02877	NA	NA
UHGV-0123697_7	Structural annotation	PF09693	NA	NA
UHGV-0123697_8	PHROG	phrog_12931	NA	unknown function
UHGV-0123697_9	KOfam	K24248	EMID1; EMI domain-containing protein 1	NA
UHGV-0123697_9	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0123697_9	UniRef90	UniRef90_UPI001A9B4A5E	collagen-like protein	NA
UHGV-0123697_9	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0123697_10	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0123697_10	eggNOG-mapper	33035.JPJF01000093_gene2239	NA	NA
UHGV-0123697_11	PHROG	phrog_11037	NA	unknown function
UHGV-0123697_11	UniRef90	UniRef90_A0A7G5N2U5	Peptidase M23	NA
UHGV-0123697_11	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0123697_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0123697_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0123697_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0123697_11	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0123697_12	PHROG	phrog_6616	tail protein	tail
UHGV-0123697_12	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0123697_12	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0123697_12	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0123697_13	PHROG	phrog_1194	NA	unknown function
UHGV-0123697_13	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0123697_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0123697_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0123697_14	UniRef90	UniRef90_A0A1C5VM72	Phage-related protein	NA
UHGV-0123697_14	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0123697_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0123697_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0123697_15	PHROG	phrog_8355	NA	unknown function
UHGV-0123697_15	UniRef90	UniRef90_UPI00148B251E	Gp15 family bacteriophage protein	NA
UHGV-0123697_15	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0123697_16	PHROG	phrog_8300	NA	unknown function
UHGV-0123697_16	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0123697_16	Structural annotation	PF06854	NA	NA
UHGV-0123697_17	PHROG	phrog_820	major tail protein	tail
UHGV-0123697_17	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0123697_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0123697_18	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0123697_18	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0123697_18	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-0123697_18	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0123697_18	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0123697_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0123697_19	eggNOG-mapper	33035.JPJF01000093_gene2248	NA	NA
UHGV-0123697_20	PHROG	phrog_8710	NA	unknown function
UHGV-0123697_20	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0123697_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0123697_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0123697_21	eggNOG-mapper	33035.JPJF01000093_gene2250	NA	NA
UHGV-0123697_22	PHROG	phrog_1378	NA	unknown function
UHGV-0123697_22	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0123697_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0123697_23	UniRef90	UniRef90_R5RH87	Putative phage major capsid protein	NA
UHGV-0123697_23	eggNOG-mapper	33035.JPJF01000093_gene2252	NA	NA
UHGV-0123697_23	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0123697_24	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0123697_24	eggNOG-mapper	33035.JPJF01000093_gene2253	NA	NA
UHGV-0123697_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0123697_26	UniRef90	UniRef90_A0A7G5N2V8	Minor capsid protein	NA
UHGV-0123697_26	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0123697_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0123697_26	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0123697_26	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0123697_26	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-0123697_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0123697_27	UniRef90	UniRef90_UPI001D06AB95	phage portal protein	NA
UHGV-0123697_27	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0123697_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0123697_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0123697_28	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0123697_28	UniRef90	UniRef90_UPI001D0435E4	phage terminase large subunit	NA
UHGV-0123697_28	eggNOG-mapper	357809.Cphy_2971	TIGRFAM Phage	NA
UHGV-0123697_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0123697_28	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0123697_28	COG	COG5410	NA	NA
UHGV-0123697_28	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0123697_29	PHROG	phrog_2412	NA	unknown function
UHGV-0123697_29	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-0123697_29	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-0123697_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0123697_30	UniRef90	UniRef90_UPI00148B00F2	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0123697_30	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0123697_30	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0123697_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0123697_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0123697_31	PHROG	phrog_6568	NA	unknown function
UHGV-0123697_36	PHROG	phrog_17690	NA	unknown function
UHGV-0123697_36	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0123697_37	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0123697_37	UniRef90	UniRef90_A0A4R2KAL0	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-0123697_37	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0123697_37	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-0123697_38	Structural annotation	MF_00773	NA	NA
UHGV-0123697_39	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0123697_39	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0123697_39	UniRef90	UniRef90_A0A7G5MSP7	DEAD/DEAH box helicase	NA
UHGV-0123697_39	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0123697_39	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0123697_39	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0123697_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0123697_39	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0123697_39	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0123697_40	UniRef90	UniRef90_A0A174K666	DNA/RNA helicase, superfamily II, SNF2 family	NA
UHGV-0123697_40	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0123697_40	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0123697_41	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123697_41	UniRef90	UniRef90_A0A4R2KKT1	VRR-NUC domain-containing protein	NA
UHGV-0123697_41	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-0123697_41	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-0123697_42	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0123697_42	UniRef90	UniRef90_A0A7G5MSP5	Virulence-associated protein E	NA
UHGV-0123697_42	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0123697_42	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0123697_42	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0123697_42	Structural annotation	PF05272, NF011296, COG5545	NA	NA