UHGV-0123789

Genome information

Genome length 19,067 bps

CDS count 35

Completeness 61.06% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123789
vOTU ID	vOTU-042111
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_333853
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.41
Jumbo phage	No

Genome content
Genome length	19,067 bps
GC content	49.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	86.91%
Average CDS length	478.03 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123789_1	KOfam	K06904	NA	NA
UHGV-0123789_1	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0123789_1	UniRef90	UniRef90_A0A1V5IPN6	Caudovirus prohead protease	NA
UHGV-0123789_1	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0123789_1	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0123789_1	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0123789_1	COG	COG3740	Phage head maturation protease	NA
UHGV-0123789_1	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0123789_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0123789_2	UniRef90	UniRef90_A0A316PZH6	Phage portal protein	NA
UHGV-0123789_2	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-0123789_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0123789_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0123789_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0123789_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0123789_3	UniRef90	UniRef90_A0A658JW48	Terminase large subunit	NA
UHGV-0123789_3	eggNOG-mapper	411470.RUMGNA_02062	NA	NA
UHGV-0123789_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0123789_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0123789_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0123789_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0123789_4	PHROG	phrog_13845	NA	unknown function
UHGV-0123789_4	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0123789_4	Structural annotation	PF05119, COG3747	NA	NA
UHGV-0123789_5	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0123789_5	UniRef90	UniRef90_UPI001CD7177D	NA	NA
UHGV-0123789_5	eggNOG-mapper	340099.Teth39_2236	NA	NA
UHGV-0123789_5	Pfam	PF14359	NA	DUF4406
UHGV-0123789_5	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0123789_6	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123789_6	UniRef90	UniRef90_A0A8F2F0X6	Metallophosphoesterase	NA
UHGV-0123789_6	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0123789_6	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0123789_6	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0123789_6	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0123789_7	PHROG	phrog_21498	NA	unknown function
UHGV-0123789_7	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0123789_7	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0123789_7	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0123789_8	eggNOG-mapper	1120998.AUFC01000030_gene2225	NA	NA
UHGV-0123789_8	Structural annotation	PF02996	NA	NA
UHGV-0123789_14	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0123789_14	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0123789_14	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0123789_14	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0123789_14	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-0123789_14	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0123789_15	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0123789_15	UniRef90	UniRef90_UPI000B356992	adenine methyltransferase	NA
UHGV-0123789_15	eggNOG-mapper	1121121.KB894312_gene3179	DNA N-6-adenine-methyltransferase	NA
UHGV-0123789_15	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0123789_15	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0123789_15	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0123789_16	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0123789_16	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0123789_16	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0123789_16	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0123789_17	PHROG	phrog_35853	NA	unknown function
UHGV-0123789_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0123789_18	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0123789_18	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0123789_18	eggNOG-mapper	1284352.AOIG01000022_gene3783	Endodeoxyribonuclease RusA	NA
UHGV-0123789_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0123789_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0123789_19	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0123789_19	UniRef90	UniRef90_UPI00143119EB	replication initiator protein A	NA
UHGV-0123789_19	eggNOG-mapper	720554.Clocl_0687	HNH endonuclease	NA
UHGV-0123789_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0123789_19	Structural annotation	PF09524, PF01638, TIGR02220, NF040642, COG5625	NA	NA
UHGV-0123789_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0123789_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0123789_20	UniRef90	UniRef90_A0A357WVP9	Single-stranded DNA-binding protein	NA
UHGV-0123789_20	eggNOG-mapper	428125.CLOLEP_00518	Single-stranded DNA-binding protein	NA
UHGV-0123789_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0123789_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0123789_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0123789_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0123789_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0123789_21	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123789_21	UniRef90	UniRef90_A0A3D0LZU3	HNH domain-containing protein	NA
UHGV-0123789_21	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0123789_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0123789_22	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0123789_22	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0123789_22	Structural annotation	PF05772	NA	NA
UHGV-0123789_23	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123789_23	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0123789_23	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0123789_23	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0123789_24	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0123789_24	UniRef90	UniRef90_UPI001D07E623	siphovirus Gp157 family protein	NA
UHGV-0123789_24	eggNOG-mapper	555779.Dthio_PD1447	PFAM Gp157 family protein	NA
UHGV-0123789_24	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0123789_24	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0123789_26	eggNOG-mapper	1033743.CAES01000078_gene3736	Flagellar Assembly Protein A	NA
UHGV-0123789_26	COG	COG1315	Flagellar assembly protein FapA, interacts with EIIAGlc	NA
UHGV-0123789_26	Structural annotation	COG1664	NA	NA
UHGV-0123789_27	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0123789_30	PHROG	phrog_888	NA	unknown function
UHGV-0123789_30	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0123789_31	UniRef90	UniRef90_A0A417ACE5	HTH cro/C1-type domain-containing protein	NA
UHGV-0123789_31	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0123789_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0123789_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0123789_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0123789_32	UniRef90	UniRef90_UPI000693AD0F	helix-turn-helix domain-containing protein	NA
UHGV-0123789_32	eggNOG-mapper	1232446.BAIE02000002_gene795	NA	NA
UHGV-0123789_32	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0123789_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123789_32	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0123789_32	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0123789_33	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0123789_33	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0123789_33	UniRef90	UniRef90_A0A098B6M3	Antitoxin HicB	NA
UHGV-0123789_33	eggNOG-mapper	138119.DSY3841	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0123789_33	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0123789_33	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0123789_33	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0123789_34	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0123789_34	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0123789_34	UniRef90	UniRef90_A0A3D0ZDW7	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0123789_34	eggNOG-mapper	1121887.AUDK01000033_gene1450	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0123789_34	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0123789_34	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0123789_35	KOfam	K14059	int; integrase	NA
UHGV-0123789_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0123789_35	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0123789_35	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0123789_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123789_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0123789_35	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA