UHGV-0123825

Genome information

Genome length 35,975 bps

CDS count 46

Completeness 78.54% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123825
vOTU ID	vOTU-030476
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_325815
BioSample	SAMN00792069
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.95
Jumbo phage	No

Genome content
Genome length	35,975 bps
GC content	49.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.66%
Average CDS length	729.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123825_1	PHROG	phrog_15956	tail assembly protein	tail
UHGV-0123825_1	UniRef90	UniRef90_A0A1C6GMR6	NlpC/P60 family	NA
UHGV-0123825_1	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-0123825_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0123825_1	Structural annotation	PF11910, MF_01354, NF033742	NA	NA
UHGV-0123825_2	PHROG	phrog_608	holin	lysis
UHGV-0123825_2	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-0123825_2	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0123825_2	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0123825_2	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0123825_3	PHROG	phrog_1863	NA	unknown function
UHGV-0123825_3	eggNOG-mapper	1291050.JAGE01000001_gene2942	NA	NA
UHGV-0123825_4	PHROG	phrog_27545	NA	unknown function
UHGV-0123825_4	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0123825_4	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0123825_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0123825_6	Structural annotation	PF02973	NA	NA
UHGV-0123825_7	Structural annotation	PF10651, NF009453	NA	NA
UHGV-0123825_9	PHROG	phrog_6616	tail protein	tail
UHGV-0123825_9	eggNOG-mapper	86416.Clopa_0591	Phage minor structural protein	NA
UHGV-0123825_9	COG	COG4926	Phage-related protein	NA
UHGV-0123825_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0123825_10	PHROG	phrog_1194	NA	unknown function
UHGV-0123825_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0123825_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0123825_11	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-0123825_11	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0123825_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0123825_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0123825_12	PHROG	phrog_8300	NA	unknown function
UHGV-0123825_12	eggNOG-mapper	1122918.KB907248_gene4491	NA	NA
UHGV-0123825_12	Structural annotation	PF06854	NA	NA
UHGV-0123825_13	PHROG	phrog_820	major tail protein	tail
UHGV-0123825_13	UniRef90	UniRef90_R6DLA9	Conserved domain protein	NA
UHGV-0123825_13	eggNOG-mapper	1415775.U729_2611	NA	NA
UHGV-0123825_13	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0123825_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0123825_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0123825_14	UniRef90	UniRef90_UPI001C0D684F	minor capsid protein	NA
UHGV-0123825_14	eggNOG-mapper	394503.Ccel_3286	NA	NA
UHGV-0123825_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0123825_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0123825_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0123825_15	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0123825_16	PHROG	phrog_8710	NA	unknown function
UHGV-0123825_16	eggNOG-mapper	585501.HMPREF6123_0832	NA	NA
UHGV-0123825_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0123825_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0123825_17	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0123825_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0123825_18	UniRef90	UniRef90_R6DLA5	Phage major capsid protein	NA
UHGV-0123825_18	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0123825_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0123825_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0123825_19	Structural annotation	MF_02110	NA	NA
UHGV-0123825_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0123825_21	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-0123825_21	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0123825_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0123825_21	COG	COG2369	NA	NA
UHGV-0123825_21	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-0123825_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0123825_22	UniRef90	UniRef90_R6E386	Phage minor capsid protein	NA
UHGV-0123825_22	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0123825_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0123825_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0123825_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0123825_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0123825_23	UniRef90	UniRef90_A0A1M4ZB17	Phage terminase, large subunit, PBSX family	NA
UHGV-0123825_23	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0123825_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0123825_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0123825_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0123825_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0123825_24	UniRef90	UniRef90_D4CPK6	Terminase small subunit	NA
UHGV-0123825_24	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0123825_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0123825_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0123825_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0123825_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0123825_26	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0123825_26	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0123825_26	Structural annotation	PF04545	NA	NA
UHGV-0123825_27	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0123825_27	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0123825_27	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-0123825_27	eggNOG-mapper	1120971.AUCA01000043_gene1170	SNF2 family N-terminal domain	NA
UHGV-0123825_27	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0123825_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0123825_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0123825_27	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0123825_28	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123825_28	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-0123825_28	eggNOG-mapper	445335.CBN_2999	VRR-NUC domain-containing protein	NA
UHGV-0123825_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0123825_28	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0123825_29	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0123825_29	UniRef90	UniRef90_A0A2V2FYQ5	Virulence-associated protein E	NA
UHGV-0123825_29	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-0123825_29	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0123825_29	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0123825_29	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0123825_30	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0123825_30	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0123825_30	UniRef90	UniRef90_A0A7X5INW3	POLAc domain-containing protein	NA
UHGV-0123825_30	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-0123825_30	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0123825_30	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0123825_30	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0123825_31	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0123825_31	UniRef90	UniRef90_A0A2V2FV77	NA	NA
UHGV-0123825_31	eggNOG-mapper	1203606.HMPREF1526_00235	NA	NA
UHGV-0123825_31	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0123825_31	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0123825_33	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123825_33	UniRef90	UniRef90_A0A2V2FS99	NA	NA
UHGV-0123825_33	eggNOG-mapper	1203606.HMPREF1526_00234	NA	NA
UHGV-0123825_33	Pfam	PF10926	NA	DUF2800
UHGV-0123825_33	COG	COG2887	RecB family exonuclease	NA
UHGV-0123825_33	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0123825_34	PHROG	phrog_22695	NA	unknown function
UHGV-0123825_34	eggNOG-mapper	1120971.AUCA01000043_gene1180	NA	NA
UHGV-0123825_36	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0123825_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0123825_36	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-0123825_36	eggNOG-mapper	457412.RSAG_04663	sequence-specific DNA binding	NA
UHGV-0123825_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123825_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0123825_36	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0123825_39	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0123825_39	UniRef90	UniRef90_A0A3M1PVL4	XRE family transcriptional regulator (Fragment)	NA
UHGV-0123825_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123825_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0123825_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0123825_41	PHROG	phrog_585	NA	unknown function
UHGV-0123825_41	UniRef90	UniRef90_UPI001C2179E8	NA	NA
UHGV-0123825_41	eggNOG-mapper	482234.SCAZ3_03560	NA	NA
UHGV-0123825_41	Pfam	PF10711	NA	DUF2513
UHGV-0123825_41	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0123825_43	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0123825_43	UniRef90	UniRef90_UPI0013E96CDD	helix-turn-helix transcriptional regulator	NA
UHGV-0123825_43	eggNOG-mapper	1033737.CAEV01000029_gene313	Helix-turn-helix	NA
UHGV-0123825_43	Pfam	PF05339	NA	DUF739
UHGV-0123825_43	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0123825_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0123825_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0123825_44	UniRef90	UniRef90_R6MAH2	LexA repressor	NA
UHGV-0123825_44	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0123825_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123825_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0123825_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0123825_44	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0123825_45	PHROG	phrog_1847	NA	unknown function
UHGV-0123825_45	UniRef90	UniRef90_A0A1E3UAB7	T5orf172 domain-containing protein	NA
UHGV-0123825_45	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0123825_45	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0123825_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0123825_45	Structural annotation	PF19962	NA	NA
UHGV-0123825_46	KOfam	K14059	int; integrase	NA
UHGV-0123825_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0123825_46	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-0123825_46	eggNOG-mapper	1216362.B437_07177	Belongs to the 'phage' integrase family	NA
UHGV-0123825_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123825_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0123825_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA