UHGV-0123935

Genome information

Genome length 47,784 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-0123935
vOTU ID	vOTU-012170
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_319778
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.84
Jumbo phage	No

Genome content
Genome length	47,784 bps
GC content	29.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.38%
Average CDS length	764.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0123935_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0123935_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123935_1	UniRef90	UniRef90_A0A1I3QJN8	HNH endonuclease	NA
UHGV-0123935_1	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0123935_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0123935_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0123935_2	PHROG	phrog_9079	NA	unknown function
UHGV-0123935_2	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-0123935_3	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0123935_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0123935_3	UniRef90	UniRef90_A0A3D3WBD0	Sigma70_r4 domain-containing protein	NA
UHGV-0123935_3	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0123935_3	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0123935_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0123935_4	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0123935_4	eggNOG-mapper	706433.HMPREF9430_01279	NA	NA
UHGV-0123935_6	PHROG	phrog_6721	NA	unknown function
UHGV-0123935_6	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0123935_6	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0123935_8	Structural annotation	PF09388	NA	NA
UHGV-0123935_10	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0123935_10	UniRef90	UniRef90_UPI0013DE4804	NUMOD4 domain-containing protein	NA
UHGV-0123935_10	eggNOG-mapper	935836.JAEL01000005_gene2715	NUMOD4 motif	NA
UHGV-0123935_10	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0123935_11	PHROG	phrog_824	NA	unknown function
UHGV-0123935_11	UniRef90	UniRef90_UPI0018AC7469	VRR-NUC domain-containing protein	NA
UHGV-0123935_11	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0123935_11	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0123935_11	Structural annotation	PF08774	NA	NA
UHGV-0123935_14	UniRef90	UniRef90_UPI001107104E	antA/AntB antirepressor family protein	NA
UHGV-0123935_14	eggNOG-mapper	1292035.H476_1035	Phage regulatory protein	NA
UHGV-0123935_14	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0123935_14	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0123935_16	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-0123935_16	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0123935_16	UniRef90	UniRef90_A0A1Y4ISS0	RNA polymerase sigma factor	NA
UHGV-0123935_16	eggNOG-mapper	608506.COB47_0904	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0123935_16	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0123935_16	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0123935_16	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0123935_16	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0123935_16	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0123935_17	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0123935_17	UniRef90	UniRef90_UPI0005DB0037	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0123935_17	eggNOG-mapper	1292035.H476_1030	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0123935_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0123935_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0123935_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0123935_17	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-0123935_18	PHROG	phrog_23738	NA	unknown function
UHGV-0123935_18	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-0123935_20	Structural annotation	PF06600	NA	NA
UHGV-0123935_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0123935_21	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0123935_21	UniRef90	UniRef90_UPI000D1EFE3D	phage antirepressor KilAC domain-containing protein	NA
UHGV-0123935_21	eggNOG-mapper	1522092.A0A090D834_9CAUD	DNA binding	NA
UHGV-0123935_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0123935_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0123935_21	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0123935_23	UniRef90	UniRef90_UPI001C8279AF	helix-turn-helix domain-containing protein	NA
UHGV-0123935_23	eggNOG-mapper	445972.ANACOL_02796	Helix-turn-helix domain	NA
UHGV-0123935_23	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0123935_23	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0123935_24	UniRef90	UniRef90_A0A0C7I454	DNA-binding protein	NA
UHGV-0123935_24	eggNOG-mapper	195103.CPF_1603	Helix-turn-helix XRE-family like proteins	NA
UHGV-0123935_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123935_24	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0123935_25	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0123935_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0123935_25	UniRef90	UniRef90_UPI001F1D4440	helix-turn-helix domain-containing protein	NA
UHGV-0123935_25	eggNOG-mapper	431943.CKL_3317	transcriptional regulator	NA
UHGV-0123935_25	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0123935_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0123935_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0123935_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0123935_26	KOfam	K14059	int; integrase	NA
UHGV-0123935_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0123935_26	UniRef90	UniRef90_Q182K7	Integrase	NA
UHGV-0123935_26	eggNOG-mapper	272563.CD630_25190	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0123935_26	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0123935_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0123935_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0123935_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0123935_27	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0123935_27	UniRef90	UniRef90_F0SX81	HTH cro/C1-type domain-containing protein	NA
UHGV-0123935_27	eggNOG-mapper	645991.Sgly_2665	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0123935_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0123935_27	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0123935_27	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0123935_28	KOfam	K07493	K07493; putative transposase	NA
UHGV-0123935_28	PHROG	phrog_2331	transposase	integration and excision
UHGV-0123935_28	UniRef90	UniRef90_A0A8E2P752	Mutator family transposase	NA
UHGV-0123935_28	eggNOG-mapper	865861.AZSU01000009_gene578	PFAM transposase, mutator	NA
UHGV-0123935_28	Pfam	PF00872	Transposase, Mutator family	Transposase_mut
UHGV-0123935_28	NCBIFam	NF033543.1	IS256 family transposase	NA
UHGV-0123935_28	COG	COG3328	Transposase (or an inactivated derivative)	NA
UHGV-0123935_28	Structural annotation	PF00872, NF033543, COG3328	NA	NA
UHGV-0123935_29	PHROG	phrog_9996	NA	unknown function
UHGV-0123935_29	UniRef90	UniRef90_A0A1M5PVG6	Replication-relaxation	NA
UHGV-0123935_30	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0123935_30	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0123935_30	UniRef90	UniRef90_UPI0013DDE88F	DNA translocase FtsK	NA
UHGV-0123935_30	eggNOG-mapper	315730.BcerKBAB4_5659	FtsK/SpoIIIE family	NA
UHGV-0123935_30	PADLOC	SspH_00004	SspH	SSP
UHGV-0123935_30	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0123935_30	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0123935_30	Structural annotation	PF01580, PF17854, MF_00348, NF041214, COG0433	NA	NA
UHGV-0123935_32	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0123935_32	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0123935_33	PHROG	phrog_6239	NA	unknown function
UHGV-0123935_34	KOfam	K07496	K07496; putative transposase	NA
UHGV-0123935_34	PHROG	phrog_506	transposase	integration and excision
UHGV-0123935_34	UniRef90	UniRef90_A0A173WXD7	Transposase, IS605 OrfB family	NA
UHGV-0123935_34	eggNOG-mapper	500633.CLOHIR_01312	Putative transposase DNA-binding domain	NA
UHGV-0123935_34	PADLOC	V_U3	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0123935_34	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0123935_34	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0123935_34	COG	COG0675	Transposase	NA
UHGV-0123935_34	Structural annotation	PF01385, MF_00034, NF040570, COG0675	NA	NA
UHGV-0123935_36	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0123935_36	UniRef90	UniRef90_UPI0018AA2066	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0123935_36	eggNOG-mapper	441769.ABFU01000059_gene378	sh3 domain protein	NA
UHGV-0123935_36	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0123935_36	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0123935_36	Structural annotation	PF01510, PF13457, MF_04111, NF008758, NF033202, COG4991, COG3023	NA	NA
UHGV-0123935_37	PHROG	phrog_1129	holin	lysis
UHGV-0123935_37	UniRef90	UniRef90_A0A8I1VCW0	Phage holin family protein	NA
UHGV-0123935_37	eggNOG-mapper	1391647.AVSV01000036_gene884	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0123935_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0123935_37	Structural annotation	PF06946	NA	NA
UHGV-0123935_38	PHROG	phrog_1863	NA	unknown function
UHGV-0123935_38	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0123935_39	UniRef90	UniRef90_A0A4R3YZ88	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-0123935_39	eggNOG-mapper	1121334.KB911070_gene1258	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0123935_39	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0123935_39	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0123935_40	KOfam	K06330	cotH; spore coat protein H	NA
UHGV-0123935_40	PHROG	phrog_9391	NA	unknown function
UHGV-0123935_40	eggNOG-mapper	1114972.AUAW01000009_gene2144	CotH kinase protein	NA
UHGV-0123935_40	Pfam	PF08757	CotH kinase protein	CotH
UHGV-0123935_40	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0123935_40	COG	COG5337	Spore coat protein CotH	NA
UHGV-0123935_40	Structural annotation	PF08757, PF02368, PF13385, PF10651, TIGR04225, COG5337	NA	NA
UHGV-0123935_42	KOfam	K19470	C1QTNF1_6_8; complement C1q tumor necrosis factor-related protein 1/6/8	NA
UHGV-0123935_42	PHROG	phrog_16267	NA	unknown function
UHGV-0123935_42	UniRef90	UniRef90_UPI0003716F2D	phage tail protein	NA
UHGV-0123935_42	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0123935_42	COG	COG4926	Phage-related protein	NA
UHGV-0123935_42	Structural annotation	PF13157, NF041899	NA	NA
UHGV-0123935_43	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0123935_43	UniRef90	UniRef90_UPI001D1653FC	phage tail protein	NA
UHGV-0123935_43	eggNOG-mapper	665959.HMPREF1013_00189	Phage minor structural protein	NA
UHGV-0123935_43	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0123935_43	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0123935_43	Structural annotation	PF14594, PF08239, PF05382, TIGR01665, NF041850, NF033742, COG4926, COG4991, COG0791	NA	NA
UHGV-0123935_44	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0123935_44	UniRef90	UniRef90_A0A1I3QJ72	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0123935_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0123935_44	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0123935_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0123935_44	COG	COG3807	SH3-like domain	NA
UHGV-0123935_44	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-0123935_45	KOfam	K10866	RAD50; DNA repair protein RAD50 [EC:3.6.-.-]	NA
UHGV-0123935_45	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0123935_45	UniRef90	UniRef90_UPI0011074901	phage tail tape measure protein	NA
UHGV-0123935_45	eggNOG-mapper	86416.Clopa_0349	Phage-related minor tail protein	NA
UHGV-0123935_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0123935_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0123935_45	COG	COG1340	NA	NA
UHGV-0123935_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0123935_46	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-0123935_47	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0123935_47	eggNOG-mapper	1121866.AUGK01000006_gene884	NA	NA
UHGV-0123935_47	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0123935_48	PHROG	phrog_5509	neck protein	connector
UHGV-0123935_48	eggNOG-mapper	1408823.AXUS01000025_gene2627	NA	NA
UHGV-0123935_48	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0123935_49	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0123935_50	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0123935_50	UniRef90	UniRef90_A0A1I3QJF5	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0123935_50	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0123935_50	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0123935_50	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0123935_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0123935_51	PHROG	phrog_749	NA	unknown function
UHGV-0123935_51	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0123935_51	eggNOG-mapper	1450694.BTS2_0540	NA	NA
UHGV-0123935_52	PHROG	phrog_10	major head protein	head and packaging
UHGV-0123935_52	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-0123935_52	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0123935_52	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0123935_52	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0123935_52	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0123935_52	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0123935_53	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0123935_53	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0123935_53	UniRef90	UniRef90_A0A1C5YER3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0123935_53	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0123935_53	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0123935_53	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0123935_53	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0123935_54	PHROG	phrog_12	portal protein	head and packaging
UHGV-0123935_54	UniRef90	UniRef90_UPI00148519DF	phage portal protein	NA
UHGV-0123935_54	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0123935_54	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0123935_54	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0123935_54	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0123935_54	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0123935_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0123935_55	UniRef90	UniRef90_UPI0011061D03	terminase large subunit	NA
UHGV-0123935_55	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0123935_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0123935_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0123935_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0123935_55	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0123935_56	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0123935_56	UniRef90	UniRef90_UPI000A26C9C4	P27 family phage terminase small subunit	NA
UHGV-0123935_56	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0123935_56	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0123935_56	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA