UHGV-0124145

Genome information

vOTU vOTU-020069

Genome length 38,746 bps

CDS count 68

Completeness 53.97% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124145
vOTU ID	vOTU-020069
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_326803
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	53.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.92
Jumbo phage	No

Genome content
Genome length	38,746 bps
GC content	29.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.18%
Average CDS length	527.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124145_1	KOfam	K14059	int; integrase	NA
UHGV-0124145_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0124145_1	UniRef90	UniRef90_A0A7X8JGF1	Site-specific integrase	NA
UHGV-0124145_1	eggNOG-mapper	431943.CKL_2943	Belongs to the 'phage' integrase family	NA
UHGV-0124145_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0124145_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124145_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0124145_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0124145_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0124145_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0124145_2	UniRef90	UniRef90_R5YSE6	Peptidase_S24 domain-containing protein	NA
UHGV-0124145_2	eggNOG-mapper	748727.CLJU_c36670	Peptidase S24-like	NA
UHGV-0124145_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0124145_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124145_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0124145_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124145_2	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF010465, COG1974, COG1476	NA	NA
UHGV-0124145_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0124145_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124145_3	UniRef90	UniRef90_R7IUI2	DNA-binding helix-turn-helix protein	NA
UHGV-0124145_3	eggNOG-mapper	1292035.H476_1572	Transcriptional	NA
UHGV-0124145_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124145_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124145_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0124145_8	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124145_8	UniRef90	UniRef90_UPI0018C46309	ATP-binding protein	NA
UHGV-0124145_8	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-0124145_8	Pfam	PF13479	AAA domain	AAA_24
UHGV-0124145_8	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0124145_8	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0124145_9	UniRef90	UniRef90_A0A7X5DCB3	PDDEXK_1 domain-containing protein	NA
UHGV-0124145_9	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-0124145_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0124145_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0124145_10	UniRef90	UniRef90_R6XT61	Single-stranded DNA-binding protein	NA
UHGV-0124145_10	eggNOG-mapper	398512.JQKC01000002_gene1869	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0124145_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0124145_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0124145_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124145_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0124145_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0124145_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0124145_11	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0124145_11	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0124145_11	Pfam	PF05772	NinB protein	NinB
UHGV-0124145_11	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0124145_12	PHROG	phrog_7566	NA	unknown function
UHGV-0124145_12	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-0124145_14	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0124145_14	eggNOG-mapper	1031288.AXAA01000044_gene1970	NA	NA
UHGV-0124145_14	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0124145_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0124145_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0124145_15	UniRef90	UniRef90_A3DI90	AAA ATPase	NA
UHGV-0124145_15	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0124145_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0124145_15	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0124145_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0124145_15	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0124145_16	PHROG	phrog_4973	NA	unknown function
UHGV-0124145_16	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0124145_16	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0124145_16	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-0124145_17	KOfam	K06940	NA	NA
UHGV-0124145_17	PHROG	phrog_32498	NA	unknown function
UHGV-0124145_17	UniRef90	UniRef90_A0A415HVR5	YkgJ family cysteine cluster protein	NA
UHGV-0124145_17	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0124145_17	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0124145_23	PHROG	phrog_625	NA	unknown function
UHGV-0124145_23	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-0124145_23	eggNOG-mapper	1235800.C819_02245	NA	NA
UHGV-0124145_23	Structural annotation	PF12961	NA	NA
UHGV-0124145_34	Structural annotation	PF15188	NA	NA
UHGV-0124145_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124145_35	UniRef90	UniRef90_I0RBB7	PF07374 family protein	NA
UHGV-0124145_35	eggNOG-mapper	1095750.HMPREF9970_0179	NA	NA
UHGV-0124145_35	Structural annotation	PF04545, MF_00962, TIGR02984, COG1191	NA	NA
UHGV-0124145_38	PHROG	phrog_1233	NA	unknown function
UHGV-0124145_39	PHROG	phrog_23746	NA	unknown function
UHGV-0124145_39	eggNOG-mapper	632518.Calow_0826	NA	NA
UHGV-0124145_40	PHROG	phrog_5902	NA	unknown function
UHGV-0124145_40	UniRef90	UniRef90_UPI000B20B41E	DEAD/DEAH box helicase family protein	NA
UHGV-0124145_40	eggNOG-mapper	1226322.HMPREF1545_03544	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0124145_40	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0124145_40	Structural annotation	PF03354, MF_04148, NF007827, COG5410	NA	NA
UHGV-0124145_41	PHROG	phrog_5902	NA	unknown function
UHGV-0124145_41	UniRef90	UniRef90_A0A0M2NI11	Putative terminase B protein	NA
UHGV-0124145_41	eggNOG-mapper	1226322.HMPREF1545_03544	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0124145_41	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0124145_41	Structural annotation	PF20441, MF_04148, TIGR01547, COG4373	NA	NA
UHGV-0124145_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0124145_42	UniRef90	UniRef90_UPI000C078B3E	phage portal protein	NA
UHGV-0124145_42	eggNOG-mapper	1522092.A0A090DBP3_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0124145_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124145_42	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0124145_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0124145_43	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0124145_43	UniRef90	UniRef90_A0A5M8BYE4	Phage_Mu_F domain-containing protein	NA
UHGV-0124145_43	eggNOG-mapper	469604.HMPREF0946_01091	Phage Mu protein F like protein	NA
UHGV-0124145_43	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0124145_43	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0124145_43	COG	COG2369	NA	NA
UHGV-0124145_43	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0124145_44	PHROG	phrog_6473	NA	unknown function
UHGV-0124145_44	eggNOG-mapper	1392493.JIAB01000001_gene2639	NA	NA
UHGV-0124145_45	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0124145_45	UniRef90	UniRef90_UPI0015D4C5E5	phage scaffolding protein	NA
UHGV-0124145_45	eggNOG-mapper	357809.Cphy_2965	Phage minor structural protein GP20	NA
UHGV-0124145_45	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0124145_45	Structural annotation	PF06810	NA	NA
UHGV-0124145_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0124145_46	UniRef90	UniRef90_A0A6N7S5V0	Phage major capsid protein	NA
UHGV-0124145_46	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0124145_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0124145_46	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0124145_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0124145_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0124145_46	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0124145_47	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0124145_47	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0124145_48	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0124145_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124145_49	UniRef90	UniRef90_A0A4R7KUL9	HK97 gp10 family phage protein	NA
UHGV-0124145_49	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0124145_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124145_49	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0124145_49	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0124145_50	PHROG	phrog_78	tail terminator	connector
UHGV-0124145_50	UniRef90	UniRef90_A0A841T7N0	NA	NA
UHGV-0124145_50	eggNOG-mapper	996306.SSUR61_0980	NA	NA
UHGV-0124145_50	Structural annotation	PF05657	NA	NA
UHGV-0124145_51	PHROG	phrog_88	major tail protein	tail
UHGV-0124145_51	eggNOG-mapper	1408424.JHYI01000032_gene3816	Phage tail tube protein	NA
UHGV-0124145_51	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0124145_51	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0124145_54	PHROG	phrog_7078	NA	unknown function
UHGV-0124145_54	UniRef90	UniRef90_A0A7X2YX47	Phage tail tape measure protein	NA
UHGV-0124145_54	eggNOG-mapper	743719.PaelaDRAFT_5670	phage tail tape measure protein	NA
UHGV-0124145_54	COG	COG5283	Phage-related tail protein	NA
UHGV-0124145_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0124145_55	UniRef90	UniRef90_A0A841TEX8	Phage tail family protein	NA
UHGV-0124145_55	eggNOG-mapper	491915.Aflv_0674	Phage tail protein	NA
UHGV-0124145_55	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0124145_55	COG	COG4722	Phage-related protein YomH	NA
UHGV-0124145_55	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0124145_56	PHROG	phrog_538	minor tail protein	tail
UHGV-0124145_56	UniRef90	UniRef90_UPI0006847BDA	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0124145_56	eggNOG-mapper	491915.Aflv_0677	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0124145_56	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0124145_56	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0124145_57	PHROG	phrog_1220	head protein	head and packaging
UHGV-0124145_57	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0124145_57	eggNOG-mapper	491915.Aflv_0675	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0124145_57	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0124145_58	PHROG	phrog_372	tail protein	tail
UHGV-0124145_58	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-0124145_58	eggNOG-mapper	1211844.CBLM010000023_gene977	NA	NA
UHGV-0124145_58	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0124145_59	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0124145_61	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0124145_63	PHROG	phrog_937	hemolysin	other
UHGV-0124145_64	Structural annotation	PF16938	NA	NA
UHGV-0124145_65	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0124145_65	PHROG	phrog_35436	amidase	lysis
UHGV-0124145_65	UniRef90	UniRef90_R6XV44	SH3b domain-containing protein	NA
UHGV-0124145_65	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0124145_65	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0124145_65	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0124145_65	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0124145_65	Structural annotation	PF01510, PF18342, PF08239, MF_04111, NF040670, NF008758, COG5632	NA	NA
UHGV-0124145_67	PHROG	phrog_1281	NA	unknown function
UHGV-0124145_67	UniRef90	UniRef90_A0A430AK42	NA	NA
UHGV-0124145_67	eggNOG-mapper	1449342.JQMR01000001_gene977	NA	NA
UHGV-0124145_67	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0124145_67	COG	COG3600	NA	NA