UHGV-0124162

Genome information

Genome length 24,599 bps

CDS count 37

Completeness 61.56% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124162
vOTU ID	vOTU-030487
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_336006
BioSample	SAMN00791982
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.99
Jumbo phage	No

Genome content
Genome length	24,599 bps
GC content	43.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	91.51%
Average CDS length	611.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124162_2	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0124162_2	UniRef90	UniRef90_UPI000DD35F57	tape measure protein	NA
UHGV-0124162_2	eggNOG-mapper	1316932.MHH_c16620	Phage-related minor tail protein	NA
UHGV-0124162_2	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0124162_2	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0124162_2	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0124162_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0124162_2	Structural annotation	PF20155, PF06120, MF_04138, TIGR01541, TIGR01760, COG5281	NA	NA
UHGV-0124162_4	PHROG	phrog_2812	NA	unknown function
UHGV-0124162_4	UniRef90	UniRef90_UPI0019551461	KilA-N domain-containing protein	NA
UHGV-0124162_4	eggNOG-mapper	230158.Q7Y5V4_9CAUD	DNA binding	NA
UHGV-0124162_4	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0124162_4	Pfam	PF10548	P22AR C-terminal domain	P22_AR_C
UHGV-0124162_4	Structural annotation	PF10548, PF04383	NA	NA
UHGV-0124162_5	PHROG	phrog_36853	NA	unknown function
UHGV-0124162_6	PHROG	phrog_3887	transcriptional regulator	transcription regulation
UHGV-0124162_6	eggNOG-mapper	637911.AM305_07843	NA	NA
UHGV-0124162_7	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-0124162_7	UniRef90	UniRef90_UPI001E390219	phage antirepressor N-terminal domain-containing protein	NA
UHGV-0124162_7	eggNOG-mapper	1028806.GGE_0666	P22_AR N-terminal domain	NA
UHGV-0124162_7	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-0124162_7	COG	COG3547	Transposase	NA
UHGV-0124162_7	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-0124162_8	PHROG	phrog_337	tail protein	tail
UHGV-0124162_8	UniRef90	UniRef90_UPI000DD4412B	NA	NA
UHGV-0124162_8	eggNOG-mapper	1028806.GGE_0497	NA	NA
UHGV-0124162_8	Pfam	PF13227	NA	DUF4035
UHGV-0124162_8	Structural annotation	PF13227, TIGR01715	NA	NA
UHGV-0124162_9	PHROG	phrog_344	tail assembly chaperone	tail
UHGV-0124162_9	UniRef90	UniRef90_A0A0D6G0U4	NA	NA
UHGV-0124162_9	eggNOG-mapper	339671.Asuc_1246	NA	NA
UHGV-0124162_9	Structural annotation	PF16462	NA	NA
UHGV-0124162_10	PHROG	phrog_584	major tail protein	tail
UHGV-0124162_10	UniRef90	UniRef90_W0Q3V9	NA	NA
UHGV-0124162_10	eggNOG-mapper	1028806.GGE_0499	NA	NA
UHGV-0124162_10	Structural annotation	PF16461, PF12195, TIGR02126, COG5437	NA	NA
UHGV-0124162_11	PHROG	phrog_78	tail terminator	connector
UHGV-0124162_11	UniRef90	UniRef90_UPI000E57323D	NA	NA
UHGV-0124162_11	eggNOG-mapper	339671.Asuc_1244	NA	NA
UHGV-0124162_11	Pfam	PF11367	NA	DUF3168
UHGV-0124162_11	Structural annotation	PF11367	NA	NA
UHGV-0124162_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124162_12	UniRef90	UniRef90_A6VNQ6	Phage protein, HK97 gp10 family	NA
UHGV-0124162_12	eggNOG-mapper	634176.NT05HA_0499	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0124162_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124162_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0124162_12	Structural annotation	TIGR01725	NA	NA
UHGV-0124162_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0124162_13	UniRef90	UniRef90_E6KYB5	Phage head-tail adaptor	NA
UHGV-0124162_13	eggNOG-mapper	634176.NT05HA_0498	Phage head-tail joining protein	NA
UHGV-0124162_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0124162_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0124162_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0124162_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0124162_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0124162_14	UniRef90	UniRef90_E6KYB6	NA	NA
UHGV-0124162_14	eggNOG-mapper	339671.Asuc_1241	Phage gp6-like head-tail connector protein	NA
UHGV-0124162_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0124162_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0124162_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0124162_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0124162_15	UniRef90	UniRef90_A0A1F0UDS4	Phage capsid protein	NA
UHGV-0124162_15	eggNOG-mapper	339671.Asuc_1240	Phage capsid family	NA
UHGV-0124162_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0124162_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0124162_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0124162_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0124162_16	KOfam	K06904	NA	NA
UHGV-0124162_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0124162_16	UniRef90	UniRef90_A0A378NFV4	Phage prohead protease, HK97 family	NA
UHGV-0124162_16	eggNOG-mapper	339671.Asuc_1239	Caudovirus prohead serine protease	NA
UHGV-0124162_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0124162_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0124162_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0124162_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0124162_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0124162_17	UniRef90	UniRef90_A6VNQ1	Phage portal protein, HK97 family	NA
UHGV-0124162_17	eggNOG-mapper	339671.Asuc_1238	Phage portal protein	NA
UHGV-0124162_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0124162_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0124162_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0124162_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0124162_18	PHROG	phrog_7105	NA	unknown function
UHGV-0124162_18	UniRef90	UniRef90_A0A087L0H1	Membrane protein	NA
UHGV-0124162_18	eggNOG-mapper	1524467.IV04_14610	NA	NA
UHGV-0124162_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0124162_19	UniRef90	UniRef90_E6KYC1	Terminase	NA
UHGV-0124162_19	eggNOG-mapper	339671.Asuc_1236	Phage Terminase	NA
UHGV-0124162_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0124162_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0124162_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0124162_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0124162_20	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0124162_20	UniRef90	UniRef90_A0A1F0UDR8	Terminase	NA
UHGV-0124162_20	eggNOG-mapper	339671.Asuc_1235	Phage terminase, small subunit	NA
UHGV-0124162_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0124162_20	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0124162_20	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0124162_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0124162_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0124162_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124162_21	UniRef90	UniRef90_UPI001F0258F0	HNH endonuclease	NA
UHGV-0124162_21	eggNOG-mapper	339671.Asuc_1234	HNH endonuclease	NA
UHGV-0124162_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0124162_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124162_21	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0124162_22	PHROG	phrog_214	Rz-like spanin	lysis
UHGV-0124162_22	UniRef90	UniRef90_UPI0009F49AE6	NA	NA
UHGV-0124162_22	eggNOG-mapper	155515.JP36_07500	NA	NA
UHGV-0124162_22	Pfam	PF10828	NA	DUF2570
UHGV-0124162_23	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0124162_23	PHROG	phrog_7	endolysin	lysis
UHGV-0124162_23	UniRef90	UniRef90_E6KYC7	Lysozyme	NA
UHGV-0124162_23	eggNOG-mapper	669262.COK_1048	Phage lysozyme	NA
UHGV-0124162_23	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0124162_23	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0124162_23	HAMAP	MF_04110	Endolysin	NA
UHGV-0124162_23	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0124162_24	UniRef90	UniRef90_UPI001AACDC10	HP1 family phage holin	NA
UHGV-0124162_24	Pfam	PF16080	Bacteriophage holin family HP1	Phage_holin_2_3
UHGV-0124162_25	PHROG	phrog_943	anti-termination protein Q-like	transcription regulation
UHGV-0124162_25	UniRef90	UniRef90_UPI0009F6703D	antitermination protein	NA
UHGV-0124162_25	eggNOG-mapper	634176.NT05HA_0488	NA	NA
UHGV-0124162_25	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0124162_25	Structural annotation	PF06530	NA	NA
UHGV-0124162_26	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124162_26	UniRef90	UniRef90_UPI0009F1723A	recombination protein NinG	NA
UHGV-0124162_26	eggNOG-mapper	1028806.GGE_2209	Bacteriophage Lambda NinG protein	NA
UHGV-0124162_26	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0124162_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124162_26	Structural annotation	PF05766, NF001638, COG4068	NA	NA
UHGV-0124162_27	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0124162_27	UniRef90	UniRef90_UPI001CFE92DC	NA	NA
UHGV-0124162_27	eggNOG-mapper	634176.NT05HA_0485	NA	NA
UHGV-0124162_27	Pfam	PF07105	NA	DUF1367
UHGV-0124162_27	Structural annotation	PF07105	NA	NA
UHGV-0124162_28	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0124162_28	UniRef90	UniRef90_E6KYD3	Site-specific DNA-methyltransferase (Adenine-specific)	NA
UHGV-0124162_28	eggNOG-mapper	634176.NT05HA_0484	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0124162_28	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0124162_28	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0124162_28	Structural annotation	PF05869, MF_00934, TIGR01712	NA	NA
UHGV-0124162_29	PHROG	phrog_109	P-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0124162_29	UniRef90	UniRef90_E6KYD4	Putative phage replication protein	NA
UHGV-0124162_29	eggNOG-mapper	155515.JP36_07545	Replication protein P	NA
UHGV-0124162_29	Pfam	PF06992	Replication protein P	Phage_lambda_P
UHGV-0124162_29	Structural annotation	PF06992	NA	NA
UHGV-0124162_30	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0124162_30	UniRef90	UniRef90_E6KYD5	Phage_rep_O domain-containing protein	NA
UHGV-0124162_30	eggNOG-mapper	1432056.X781_8260	NA	NA
UHGV-0124162_30	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0124162_30	Structural annotation	PF04492, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0124162_31	PHROG	phrog_2812	NA	unknown function
UHGV-0124162_31	UniRef90	UniRef90_E6KYD6	Phage antirepressor	NA
UHGV-0124162_31	eggNOG-mapper	948565.AFFP02000034_gene1478	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0124162_31	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0124162_31	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0124162_32	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0124162_32	UniRef90	UniRef90_A0A1B3JK87	Orf33	NA
UHGV-0124162_32	eggNOG-mapper	1028806.GGE_1939	NA	NA
UHGV-0124162_32	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0124162_32	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0124162_32	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0124162_33	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0124162_33	UniRef90	UniRef90_C6AM32	Antirepressor Cro	NA
UHGV-0124162_33	eggNOG-mapper	634176.NT05HA_0479	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-0124162_33	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0124162_33	Structural annotation	PF15943, NF041951, COG4197	NA	NA
UHGV-0124162_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124162_34	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0124162_34	UniRef90	UniRef90_A4NZC8	Predicted transcriptional regulator	NA
UHGV-0124162_34	eggNOG-mapper	634176.NT05HA_0478	transcriptional regulator	NA
UHGV-0124162_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124162_34	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0124162_34	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0124162_34	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0124162_35	KOfam	K19166	higB; mRNA interferase HigB [EC:3.1.-.-]	NA
UHGV-0124162_35	PHROG	phrog_5734	NA	unknown function
UHGV-0124162_35	UniRef90	UniRef90_UPI001E459D11	type II toxin-antitoxin system HigB family toxin	NA
UHGV-0124162_35	eggNOG-mapper	762982.HMPREF9442_02453	HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	NA
UHGV-0124162_35	Pfam	PF09907	HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	HigB_toxin
UHGV-0124162_35	COG	COG4680	mRNA-degrading endonuclease (mRNA interferase) HigB, toxic component of the HigAB toxin-antitoxin module	NA
UHGV-0124162_35	Structural annotation	PF09907, TIGR00053, COG4680	NA	NA
UHGV-0124162_36	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0124162_36	PHROG	phrog_11202	NA	unknown function
UHGV-0124162_36	UniRef90	UniRef90_UPI001E43D3A0	helix-turn-helix domain-containing protein	NA
UHGV-0124162_36	eggNOG-mapper	1005999.GLGR_3090	transcription regulator containing HTH domain	NA
UHGV-0124162_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124162_36	COG	COG5499	Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain	NA