UHGV-0124177

Genome information

vOTU vOTU-020118

Genome length 25,051 bps

CDS count 40

Completeness 59.56% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124177
vOTU ID	vOTU-020118
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_332506
BioSample	SAMN00792043
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31
Jumbo phage	No

Genome content
Genome length	25,051 bps
GC content	46.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.70%
Average CDS length	579.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124177_2	Structural annotation	NF008911	NA	NA
UHGV-0124177_4	Structural annotation	PF13443, NF040507, COG1476	NA	NA
UHGV-0124177_5	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0124177_5	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0124177_5	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0124177_8	PHROG	phrog_15198	NA	unknown function
UHGV-0124177_8	UniRef90	UniRef90_A0A0F0CH36	NA	NA
UHGV-0124177_9	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0124177_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0124177_9	UniRef90	UniRef90_A0A0F0C3Y7	Tyrosine recombinase XerC	NA
UHGV-0124177_9	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0124177_9	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0124177_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124177_9	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0124177_9	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0124177_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124177_10	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0124177_10	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0124177_10	Structural annotation	PF04545	NA	NA
UHGV-0124177_11	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0124177_11	PHROG	phrog_3502	NA	unknown function
UHGV-0124177_11	UniRef90	UniRef90_R0AHW3	LexA_DNA_bind domain-containing protein	NA
UHGV-0124177_11	eggNOG-mapper	742733.HMPREF9469_01830	LexA DNA binding domain	NA
UHGV-0124177_11	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0124177_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0124177_13	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0124177_13	UniRef90	UniRef90_UPI001EE889A0	phage terminase small subunit	NA
UHGV-0124177_13	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0124177_13	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0124177_13	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0124177_13	COG	COG5484	NA	NA
UHGV-0124177_13	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0124177_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124177_14	PHROG	phrog_10250	NA	unknown function
UHGV-0124177_14	UniRef90	UniRef90_N9YXK3	PBSX family phage terminase, large subunit	NA
UHGV-0124177_14	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0124177_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0124177_14	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0124177_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124177_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124177_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0124177_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0124177_15	UniRef90	UniRef90_N9YY32	SPP1 family phage portal protein	NA
UHGV-0124177_15	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0124177_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124177_15	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0124177_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0124177_16	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0124177_16	UniRef90	UniRef90_G5HGQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0124177_16	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0124177_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0124177_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0124177_16	COG	COG2369	NA	NA
UHGV-0124177_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0124177_17	UniRef90	UniRef90_UPI0004D8DC63	NA	NA
UHGV-0124177_18	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0124177_18	UniRef90	UniRef90_A0A3E2U4V3	NA	NA
UHGV-0124177_18	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0124177_18	Pfam	PF14265	NA	DUF4355
UHGV-0124177_18	Structural annotation	PF14265	NA	NA
UHGV-0124177_19	PHROG	phrog_247	major head protein	head and packaging
UHGV-0124177_19	UniRef90	UniRef90_D3ANA7	Putative coat protein	NA
UHGV-0124177_19	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0124177_19	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0124177_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0124177_20	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-0124177_20	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0124177_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0124177_20	Structural annotation	PF05135	NA	NA
UHGV-0124177_21	PHROG	phrog_2168	NA	unknown function
UHGV-0124177_21	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0124177_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0124177_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124177_22	UniRef90	UniRef90_G5HGQ0	HK97 gp10 family phage protein	NA
UHGV-0124177_22	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0124177_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124177_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0124177_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0124177_23	PHROG	phrog_78	tail terminator	connector
UHGV-0124177_23	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0124177_23	Structural annotation	PF05657	NA	NA
UHGV-0124177_24	PHROG	phrog_158	major tail protein	tail
UHGV-0124177_24	UniRef90	UniRef90_A0A395YJ71	Phage tail protein	NA
UHGV-0124177_24	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0124177_24	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0124177_24	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0124177_25	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0124177_25	UniRef90	UniRef90_UPI0008324CF8	NA	NA
UHGV-0124177_25	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0124177_25	Pfam	PF19591	NA	DUF6096
UHGV-0124177_25	Structural annotation	PF19591	NA	NA
UHGV-0124177_26	PHROG	phrog_2066	NA	unknown function
UHGV-0124177_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0124177_27	UniRef90	UniRef90_A0A174GX48	Phage-like protein	NA
UHGV-0124177_27	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0124177_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0124177_27	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0124177_28	PHROG	phrog_9418	NA	unknown function
UHGV-0124177_28	UniRef90	UniRef90_N9XK57	zinc_ribbon_2 domain-containing protein	NA
UHGV-0124177_28	eggNOG-mapper	1235798.C817_02111	NA	NA
UHGV-0124177_28	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0124177_31	PHROG	phrog_1194	NA	unknown function
UHGV-0124177_31	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0124177_31	Pfam	PF20458	NA	DUF6711
UHGV-0124177_31	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0124177_32	PHROG	phrog_18190	NA	unknown function
UHGV-0124177_32	UniRef90	UniRef90_N9YY23	Peptidase S74 domain-containing protein	NA
UHGV-0124177_32	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0124177_32	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0124177_32	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0124177_34	PHROG	phrog_17196	kinase	other
UHGV-0124177_34	eggNOG-mapper	742733.HMPREF9469_01805	NA	NA
UHGV-0124177_34	Structural annotation	PF13619, COG3536	NA	NA
UHGV-0124177_37	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-0124177_38	UniRef90	UniRef90_A0A3E2U4U3	XkdX family protein	NA
UHGV-0124177_38	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0124177_38	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0124177_39	PHROG	phrog_199	holin	lysis
UHGV-0124177_39	UniRef90	UniRef90_A0A414ADK3	Holin	NA
UHGV-0124177_39	eggNOG-mapper	411902.CLOBOL_05644	Bacteriophage holin family	NA
UHGV-0124177_39	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0124177_39	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0124177_39	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0124177_39	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA