UHGV-0124207

Genome information

Genome length 42,689 bps

CDS count 76

Completeness 86.09% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124207
vOTU ID	vOTU-017622
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_329071
BioSample	SAMN00993240
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.68
Jumbo phage	No

Genome content
Genome length	42,689 bps
GC content	49.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	91.56%
Average CDS length	516.95 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124207_2	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-0124207_2	eggNOG-mapper	883114.HMPREF9709_01195	Phage minor structural protein GP20	NA
UHGV-0124207_2	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0124207_2	Structural annotation	PF06810	NA	NA
UHGV-0124207_3	PHROG	phrog_544	major head protein	head and packaging
UHGV-0124207_3	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0124207_3	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0124207_3	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0124207_3	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0124207_4	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0124207_4	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA
UHGV-0124207_5	PHROG	phrog_3366	NA	unknown function
UHGV-0124207_5	Pfam	PF20536	NA	DUF6751
UHGV-0124207_5	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0124207_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0124207_6	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0124207_6	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0124207_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0124207_6	Structural annotation	PF11114	NA	NA
UHGV-0124207_7	PHROG	phrog_3266	tail completion	connector
UHGV-0124207_7	Structural annotation	PF12691	NA	NA
UHGV-0124207_8	PHROG	phrog_820	major tail protein	tail
UHGV-0124207_8	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0124207_8	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0124207_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0124207_9	Structural annotation	PF20378	NA	NA
UHGV-0124207_10	PHROG	phrog_706	NA	unknown function
UHGV-0124207_10	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-0124207_10	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0124207_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0124207_10	Structural annotation	PF06854	NA	NA
UHGV-0124207_11	PHROG	phrog_23464	NA	unknown function
UHGV-0124207_11	UniRef90	UniRef90_A0A1C6B4Q1	Phage-related protein	NA
UHGV-0124207_11	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0124207_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0124207_11	Structural annotation	PF20155	NA	NA
UHGV-0124207_12	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0124207_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0124207_13	PHROG	phrog_32744	NA	unknown function
UHGV-0124207_13	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0124207_13	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0124207_15	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0124207_15	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0124207_17	PHROG	phrog_10898	NA	unknown function
UHGV-0124207_17	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0124207_17	eggNOG-mapper	1347368.HG964403_gene4490	S-layer homology domain	NA
UHGV-0124207_17	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0124207_17	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0124207_18	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0124207_19	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-0124207_19	UniRef90	UniRef90_UPI001C0FAC9B	tail fiber protein	NA
UHGV-0124207_19	eggNOG-mapper	641147.HMPREF9021_01771	Phage Tail Collar Domain	NA
UHGV-0124207_19	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0124207_19	COG	COG4675	Phage tail collar domain	NA
UHGV-0124207_20	PHROG	phrog_5302	tail protein	tail
UHGV-0124207_20	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0124207_20	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0124207_20	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0124207_22	PHROG	phrog_937	hemolysin	other
UHGV-0124207_22	eggNOG-mapper	445972.ANACOL_01873	NA	NA
UHGV-0124207_24	PHROG	phrog_1129	holin	lysis
UHGV-0124207_24	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0124207_24	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0124207_24	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0124207_24	Structural annotation	PF06946	NA	NA
UHGV-0124207_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0124207_25	PHROG	phrog_18955	NA	unknown function
UHGV-0124207_25	UniRef90	UniRef90_A0A810Q4Z7	SLH domain-containing protein	NA
UHGV-0124207_25	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-0124207_25	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0124207_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0124207_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124207_25	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0124207_26	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0124207_26	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0124207_27	PHROG	phrog_3754	NA	unknown function
UHGV-0124207_27	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0124207_28	PHROG	phrog_21718	NA	unknown function
UHGV-0124207_28	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0124207_29	PHROG	phrog_22984	NA	unknown function
UHGV-0124207_30	PHROG	phrog_16490	NA	unknown function
UHGV-0124207_30	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0124207_31	PHROG	phrog_20016	NA	unknown function
UHGV-0124207_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0124207_31	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0124207_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0124207_32	Structural annotation	PF12510	NA	NA
UHGV-0124207_33	UniRef90	UniRef90_A0A7M1RSZ3	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0124207_33	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0124207_34	KOfam	K14059	int; integrase	NA
UHGV-0124207_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0124207_34	UniRef90	UniRef90_UPI001C03825E	site-specific integrase	NA
UHGV-0124207_34	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0124207_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124207_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0124207_34	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0124207_35	PHROG	phrog_9418	NA	unknown function
UHGV-0124207_35	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0124207_36	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0124207_36	UniRef90	UniRef90_A0A2N2CX30	HTH cro/C1-type domain-containing protein	NA
UHGV-0124207_36	eggNOG-mapper	394503.Ccel_3076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0124207_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124207_37	UniRef90	UniRef90_R7FEW4	NA	NA
UHGV-0124207_38	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0124207_38	UniRef90	UniRef90_A0A133ZGE4	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0124207_38	eggNOG-mapper	1231377.C426_0202	Lactococcus bacteriophage repressor	NA
UHGV-0124207_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0124207_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124207_38	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0124207_40	PHROG	phrog_750	NA	unknown function
UHGV-0124207_40	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0124207_40	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0124207_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124207_44	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0124207_45	PHROG	phrog_25245	NA	unknown function
UHGV-0124207_45	UniRef90	UniRef90_A0A810Q5U9	3D domain-containing protein	NA
UHGV-0124207_45	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-0124207_45	Pfam	PF06725	3D domain	3D
UHGV-0124207_45	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0124207_45	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0124207_47	PHROG	phrog_674	NA	unknown function
UHGV-0124207_47	UniRef90	UniRef90_A0A847VXN8	NA	NA
UHGV-0124207_47	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0124207_47	Pfam	PF07083	NA	DUF1351
UHGV-0124207_47	Structural annotation	PF07083	NA	NA
UHGV-0124207_48	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0124207_48	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124207_48	UniRef90	UniRef90_G9YN43	Recombinase, phage RecT family	NA
UHGV-0124207_48	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0124207_48	Pfam	PF03837	RecT family	RecT
UHGV-0124207_48	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0124207_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0124207_48	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0124207_50	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0124207_50	UniRef90	UniRef90_A0A1C6D5R1	Beta-lactamase superfamily domain	NA
UHGV-0124207_50	eggNOG-mapper	1127692.HMPREF9075_00077	Beta-lactamase superfamily domain	NA
UHGV-0124207_50	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0124207_50	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0124207_51	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124207_51	UniRef90	UniRef90_A0A8J6J193	HNH endonuclease	NA
UHGV-0124207_51	eggNOG-mapper	1141106.CAIB01000133_gene1117	HNH endonuclease	NA
UHGV-0124207_51	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0124207_51	Structural annotation	PF13392	NA	NA
UHGV-0124207_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0124207_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0124207_52	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0124207_52	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0124207_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0124207_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0124207_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124207_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0124207_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0124207_54	PHROG	phrog_16304	NA	unknown function
UHGV-0124207_54	UniRef90	UniRef90_A0A810QMI2	NA	NA
UHGV-0124207_54	Pfam	PF19808	NA	DUF6291
UHGV-0124207_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124207_54	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0124207_55	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0124207_55	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124207_55	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0124207_55	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0124207_55	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0124207_56	UniRef90	UniRef90_A0A4D7ATA9	Helix-turn-helix domain-containing protein	NA
UHGV-0124207_56	Structural annotation	PF04936, NF033558	NA	NA
UHGV-0124207_57	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0124207_57	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0124207_57	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0124207_58	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0124207_58	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0124207_59	PHROG	phrog_25732	NA	unknown function
UHGV-0124207_60	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0124207_61	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0124207_65	PHROG	phrog_16951	NA	unknown function
UHGV-0124207_65	UniRef90	UniRef90_UPI000E2E8D04	HK97 family phage prohead protease	NA
UHGV-0124207_65	eggNOG-mapper	693746.OBV_18840	NA	NA
UHGV-0124207_65	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0124207_66	PHROG	phrog_31336	NA	unknown function
UHGV-0124207_66	UniRef90	UniRef90_A0A6N0LWW3	NA	NA
UHGV-0124207_66	eggNOG-mapper	1357732.A0A059PYA6_9CAUD	NA	NA
UHGV-0124207_66	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0124207_67	PHROG	phrog_924	NA	unknown function
UHGV-0124207_67	UniRef90	UniRef90_A0A810Q569	NA	NA
UHGV-0124207_67	Pfam	PF04448	NA	DUF551
UHGV-0124207_67	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0124207_70	PHROG	phrog_2717	NA	unknown function
UHGV-0124207_70	eggNOG-mapper	552398.HMPREF0866_02231	NA	NA
UHGV-0124207_71	UniRef90	UniRef90_A0A174E601	Helix-turn-helix	NA
UHGV-0124207_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124207_71	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124207_72	PHROG	phrog_2412	NA	unknown function
UHGV-0124207_72	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0124207_73	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124207_73	PHROG	phrog_29775	NA	unknown function
UHGV-0124207_73	UniRef90	UniRef90_A0A1C6B5W6	Phage terminase, large subunit, PBSX family	NA
UHGV-0124207_73	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0124207_73	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124207_73	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124207_73	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0124207_74	PHROG	phrog_533	portal protein	head and packaging
UHGV-0124207_74	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0124207_74	eggNOG-mapper	397291.C804_01614	phage minor capsid protein	NA
UHGV-0124207_74	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0124207_75	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0124207_75	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-0124207_75	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0124207_75	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0124207_75	COG	COG2369	NA	NA
UHGV-0124207_75	Structural annotation	PF06152	NA	NA
UHGV-0124207_76	PHROG	phrog_1233	NA	unknown function
UHGV-0124207_76	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA