UHGV-0124210

Genome information

Genome length 33,145 bps

CDS count 47

Completeness 81.84% (medium-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124210
vOTU ID	vOTU-033453
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_329076
BioSample	SAMN00993240
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.66
Jumbo phage	No

Genome content
Genome length	33,145 bps
GC content	49.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	85.40%
Average CDS length	604.15 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124210_2	PHROG	phrog_9607	NA	unknown function
UHGV-0124210_2	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0124210_2	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0124210_4	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0124210_5	Structural annotation	PF09827, MF_01471, COG1343	NA	NA
UHGV-0124210_6	PHROG	phrog_3202	NA	unknown function
UHGV-0124210_6	UniRef90	UniRef90_UPI001559DF72	YjzC family protein	NA
UHGV-0124210_6	eggNOG-mapper	1121864.OMO_02131	YjzC-like protein	NA
UHGV-0124210_6	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0124210_6	Structural annotation	PF14168	NA	NA
UHGV-0124210_7	PHROG	phrog_10400	NA	unknown function
UHGV-0124210_7	UniRef90	UniRef90_A5MYM9	Phage-related protein	NA
UHGV-0124210_7	eggNOG-mapper	1567014.A0A0A7RTU6_9VIRU	NA	NA
UHGV-0124210_8	UniRef90	UniRef90_A0A2A6ZGP6	Transcriptional regulator	NA
UHGV-0124210_8	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0124210_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0124210_9	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0124210_9	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0124210_9	UniRef90	UniRef90_G9RN35	HTH cro/C1-type domain-containing protein	NA
UHGV-0124210_9	eggNOG-mapper	665956.HMPREF1032_01654	Peptidase S24-like	NA
UHGV-0124210_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124210_9	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0124210_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124210_9	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0124210_10	eggNOG-mapper	1235796.C815_00553	NA	NA
UHGV-0124210_11	PHROG	phrog_7312	NA	unknown function
UHGV-0124210_11	PADLOC	KwaA_00002	NA	Kiwa
UHGV-0124210_12	KOfam	K14059	int; integrase	NA
UHGV-0124210_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0124210_12	UniRef90	UniRef90_A0A143ZX40	Tyrosine recombinase XerC	NA
UHGV-0124210_12	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0124210_12	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0124210_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124210_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0124210_12	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0124210_13	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0124210_13	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0124210_13	UniRef90	UniRef90_A0A412AQ35	Addiction module toxin, HicA family	NA
UHGV-0124210_13	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0124210_13	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0124210_13	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0124210_13	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0124210_14	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0124210_14	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0124210_14	UniRef90	UniRef90_R6GVF3	HicB-like domain-containing protein	NA
UHGV-0124210_14	eggNOG-mapper	397290.C810_01569	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0124210_14	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0124210_14	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0124210_14	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0124210_15	eggNOG-mapper	1042163.BRLA_c030820	NA	NA
UHGV-0124210_16	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124210_16	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0124210_16	UniRef90	UniRef90_UPI00037BD86C	XRE family transcriptional regulator	NA
UHGV-0124210_16	eggNOG-mapper	536233.CLO_1870	IrrE N-terminal-like domain	NA
UHGV-0124210_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124210_16	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0124210_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124210_16	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0124210_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124210_17	UniRef90	UniRef90_A0A895Y2A7	Helix-turn-helix transcriptional regulator	NA
UHGV-0124210_17	eggNOG-mapper	913848.AELK01000066_gene1232	Helix-turn-helix domain	NA
UHGV-0124210_17	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0124210_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124210_17	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0124210_18	PHROG	phrog_419	NA	unknown function
UHGV-0124210_18	UniRef90	UniRef90_A0A0A8WEQ1	Phage-related protein	NA
UHGV-0124210_18	eggNOG-mapper	797515.HMPREF9103_00825	NA	NA
UHGV-0124210_18	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0124210_19	PHROG	phrog_1863	NA	unknown function
UHGV-0124210_19	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0124210_19	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-0124210_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0124210_20	PHROG	phrog_435	endolysin	lysis
UHGV-0124210_20	UniRef90	UniRef90_UPI000C7846A6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124210_20	eggNOG-mapper	411474.COPEUT_02532	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0124210_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0124210_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124210_20	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0124210_21	Structural annotation	PF14600	NA	NA
UHGV-0124210_22	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-0124210_23	UniRef90	UniRef90_UPI000CF8A338	PF13754 domain-containing protein	NA
UHGV-0124210_23	eggNOG-mapper	33035.JPJF01000023_gene3226	NA	NA
UHGV-0124210_23	Pfam	PF13754	NA	Big_3_4
UHGV-0124210_23	Structural annotation	PF13754	NA	NA
UHGV-0124210_24	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0124210_24	PHROG	phrog_11157	NA	unknown function
UHGV-0124210_24	UniRef90	UniRef90_UPI000681F570	Ig-like domain-containing protein	NA
UHGV-0124210_24	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0124210_24	Pfam	PF17957	Bacterial Ig domain	Big_7
UHGV-0124210_24	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0124210_24	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0124210_24	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0124210_27	PHROG	phrog_13879	NA	unknown function
UHGV-0124210_27	eggNOG-mapper	645991.Sgly_0356	NA	NA
UHGV-0124210_27	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0124210_28	PHROG	phrog_2700	NA	unknown function
UHGV-0124210_28	UniRef90	UniRef90_UPI00067E791F	SHOCT domain-containing protein	NA
UHGV-0124210_28	eggNOG-mapper	1234664.AMRO01000024_gene1829	Short C-terminal domain	NA
UHGV-0124210_28	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0124210_28	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0124210_28	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0124210_29	PHROG	phrog_1194	NA	unknown function
UHGV-0124210_29	Pfam	PF20458	NA	DUF6711
UHGV-0124210_29	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0124210_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0124210_30	UniRef90	UniRef90_R6DYC9	Phage-related protein-like protein	NA
UHGV-0124210_30	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0124210_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0124210_30	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0124210_32	PHROG	phrog_706	NA	unknown function
UHGV-0124210_32	UniRef90	UniRef90_A0A1C6I6N3	Bacteriophage Gp15 protein	NA
UHGV-0124210_32	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0124210_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0124210_32	Structural annotation	PF06854	NA	NA
UHGV-0124210_33	PHROG	phrog_11299	NA	unknown function
UHGV-0124210_33	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0124210_33	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0124210_33	Structural annotation	PF10666	NA	NA
UHGV-0124210_34	PHROG	phrog_3099	NA	unknown function
UHGV-0124210_34	eggNOG-mapper	1120746.CCNL01000014_gene2102	NA	NA
UHGV-0124210_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0124210_35	PHROG	phrog_3266	tail completion	connector
UHGV-0124210_35	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0124210_35	Structural annotation	PF08873	NA	NA
UHGV-0124210_36	PHROG	phrog_3366	NA	unknown function
UHGV-0124210_36	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0124210_36	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0124210_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0124210_37	eggNOG-mapper	665956.HMPREF1032_03064	NA	NA
UHGV-0124210_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0124210_38	UniRef90	UniRef90_UPI000C078656	phage major capsid protein	NA
UHGV-0124210_38	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0124210_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0124210_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0124210_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0124210_38	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0124210_39	Structural annotation	PF06810	NA	NA
UHGV-0124210_40	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-0124210_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0124210_41	UniRef90	UniRef90_A0A143ZWR0	Phage minor capsid protein 2	NA
UHGV-0124210_41	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-0124210_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0124210_41	COG	COG2369	NA	NA
UHGV-0124210_41	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0124210_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0124210_42	UniRef90	UniRef90_UPI0004B97A78	capsid protein	NA
UHGV-0124210_42	eggNOG-mapper	663278.Ethha_0090	NA	NA
UHGV-0124210_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0124210_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124210_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0124210_43	UniRef90	UniRef90_UPI000C08C328	PBSX family phage terminase large subunit	NA
UHGV-0124210_43	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0124210_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0124210_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124210_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124210_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0124210_44	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0124210_44	UniRef90	UniRef90_UPI000C078AC7	transposase	NA
UHGV-0124210_44	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0124210_44	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0124210_44	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0124210_44	Structural annotation	PF07141	NA	NA
UHGV-0124210_46	Structural annotation	TIGR01636	NA	NA