UHGV-0124224

Genome information

vOTU vOTU-020453

Genome length 23,462 bps

CDS count 28

Completeness 56.77% (medium-quality)

geNomad score 0.9645

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124224
vOTU ID	vOTU-020453
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_315992
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9645
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.56
Jumbo phage	No

Genome content
Genome length	23,462 bps
GC content	40.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	90.56%
Average CDS length	760.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124224_1	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0124224_1	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0124224_1	UniRef90	UniRef90_A0A8H0HD10	Lysis protein	NA
UHGV-0124224_1	eggNOG-mapper	585.DR95_379	Bacteriophage Rz lysis protein	NA
UHGV-0124224_1	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0124224_1	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0124224_2	PHROG	phrog_18437	NA	unknown function
UHGV-0124224_3	PHROG	phrog_4827	NA	unknown function
UHGV-0124224_3	UniRef90	UniRef90_Q8HA83	Sb55	NA
UHGV-0124224_3	eggNOG-mapper	218493.SBG_0919	NA	NA
UHGV-0124224_4	PHROG	phrog_34403	NA	unknown function
UHGV-0124224_4	eggNOG-mapper	585.DR95_3506	NA	NA
UHGV-0124224_5	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0124224_5	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124224_5	UniRef90	UniRef90_A0A2X2BKH9	HNH endonuclease	NA
UHGV-0124224_5	eggNOG-mapper	471881.PROPEN_02396	Endonuclease	NA
UHGV-0124224_5	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0124224_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124224_5	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0124224_6	PHROG	phrog_18620	membrane associated protein	moron, auxiliary metabolic gene and host takeover
UHGV-0124224_6	UniRef90	UniRef90_A0A7H0MAU8	NA	NA
UHGV-0124224_7	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0124224_7	UniRef90	UniRef90_A0A1Z1SXQ4	Phage terminase small subunit P27 family	NA
UHGV-0124224_7	eggNOG-mapper	1124991.MU9_1867	phage terminase small subunit	NA
UHGV-0124224_7	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0124224_7	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0124224_7	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0124224_7	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0124224_8	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0124224_8	UniRef90	UniRef90_A0A1Z1SWX6	Terminase	NA
UHGV-0124224_8	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-0124224_8	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0124224_8	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0124224_8	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0124224_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-0124224_9	UniRef90	UniRef90_A0A1P8DTI5	Portal protein	NA
UHGV-0124224_9	eggNOG-mapper	911008.GLAD_04128	portal protein	NA
UHGV-0124224_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0124224_9	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0124224_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0124224_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0124224_10	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0124224_10	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0124224_10	UniRef90	UniRef90_A0A0G4QJ76	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0124224_10	eggNOG-mapper	741091.Rahaq_1808	Belongs to the peptidase S14 family	NA
UHGV-0124224_10	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0124224_10	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0124224_10	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0124224_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0124224_11	UniRef90	UniRef90_A0A857SFB8	Phage major capsid protein	NA
UHGV-0124224_11	eggNOG-mapper	1147150.K7PM57_9CAUD	peptidase activity	NA
UHGV-0124224_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0124224_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0124224_11	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0124224_12	PHROG	phrog_5463	NA	unknown function
UHGV-0124224_12	UniRef90	UniRef90_A0A379FQN9	Procyclic acidic repetitive protein (PARP)	NA
UHGV-0124224_12	eggNOG-mapper	1111728.ATYS01000061_gene462	NA	NA
UHGV-0124224_12	Structural annotation	PF01281	NA	NA
UHGV-0124224_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0124224_13	UniRef90	UniRef90_A0A1Z1SXV5	Phage gp6-like head-tail connector protein	NA
UHGV-0124224_13	eggNOG-mapper	1399774.JDWH01000034_gene1974	Phage gp6-like head-tail connector protein	NA
UHGV-0124224_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0124224_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0124224_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0124224_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0124224_14	UniRef90	UniRef90_A0A1Z1SXB6	Head-tail adaptor protein	NA
UHGV-0124224_14	eggNOG-mapper	1141663.OOC_12899	Phage head-tail joining protein	NA
UHGV-0124224_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0124224_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0124224_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0124224_15	PHROG	phrog_347	tail terminator	connector
UHGV-0124224_15	eggNOG-mapper	471881.PROPEN_02387	NA	NA
UHGV-0124224_15	Structural annotation	PF12691	NA	NA
UHGV-0124224_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124224_16	UniRef90	UniRef90_UPI0012B60A79	HK97 gp10 family phage protein	NA
UHGV-0124224_16	eggNOG-mapper	1141663.OOC_12889	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0124224_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124224_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0124224_16	Structural annotation	TIGR01725	NA	NA
UHGV-0124224_17	PHROG	phrog_158	major tail protein	tail
UHGV-0124224_17	UniRef90	UniRef90_A0A6G6TFI7	Phage tail protein	NA
UHGV-0124224_17	eggNOG-mapper	471881.PROPEN_02385	Phage tail tube protein family	NA
UHGV-0124224_17	Pfam	PF16463	Phage tail tube protein family	Phage_TTP_13
UHGV-0124224_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0124224_18	PHROG	phrog_25875	tail assembly chaperone	tail
UHGV-0124224_18	UniRef90	UniRef90_A0A8H0DEY6	Phage tail protein	NA
UHGV-0124224_18	eggNOG-mapper	471881.PROPEN_02384	Phage tail assembly chaperone protein, TAC	NA
UHGV-0124224_18	Pfam	PF16462	Phage tail assembly chaperone protein, TAC	Phage_TAC_14
UHGV-0124224_18	Structural annotation	PF16462, TIGR01674	NA	NA
UHGV-0124224_19	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0124224_19	UniRef90	UniRef90_A0A1Z1SWW4	Phage tail tape measure protein	NA
UHGV-0124224_19	eggNOG-mapper	471881.PROPEN_02382	COG5281, Phage-related minor tail protein	NA
UHGV-0124224_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0124224_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0124224_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0124224_19	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0124224_20	PHROG	phrog_1302	distal tail protein	tail
UHGV-0124224_20	UniRef90	UniRef90_A0A2X2BMJ4	NA	NA
UHGV-0124224_20	eggNOG-mapper	471881.PROPEN_02381	NA	NA
UHGV-0124224_20	Structural annotation	PF09343, TIGR02217, COG4718	NA	NA
UHGV-0124224_21	PHROG	phrog_2048	tail protein	tail
UHGV-0124224_21	UniRef90	UniRef90_A0A140NI21	NA	NA
UHGV-0124224_21	eggNOG-mapper	471881.PROPEN_02380	NA	NA
UHGV-0124224_21	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0124224_22	UniRef90	UniRef90_A0A2D0L033	Cell division protein FtsK	NA
UHGV-0124224_22	eggNOG-mapper	740709.A10D4_12809	NA	NA
UHGV-0124224_22	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0124224_23	PHROG	phrog_2134	NA	unknown function
UHGV-0124224_23	UniRef90	UniRef90_K8W6M4	NA	NA
UHGV-0124224_23	eggNOG-mapper	585.DR95_1150	NA	NA
UHGV-0124224_23	Structural annotation	PF00877, NF008096, COG3738	NA	NA
UHGV-0124224_24	PHROG	phrog_10903	NA	unknown function
UHGV-0124224_24	UniRef90	UniRef90_A0A8H0HZI6	NA	NA
UHGV-0124224_24	eggNOG-mapper	471881.PROPEN_02376	Fibronectin type 3 domain	NA
UHGV-0124224_24	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0124224_24	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0124224_24	Pfam	PF09327	NA	DUF1983
UHGV-0124224_24	Pfam	PF12421	Fibronectin type III protein	DUF3672
UHGV-0124224_24	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0124224_24	Structural annotation	PF13550, PF09327, PF16323, PF21605, MF_04116, NF040662, NF010681, COG4733	NA	NA
UHGV-0124224_25	PHROG	phrog_1591	tail fiber protein	tail
UHGV-0124224_25	eggNOG-mapper	585.DR95_413	NA	NA
UHGV-0124224_25	Structural annotation	PF12195	NA	NA
UHGV-0124224_26	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124224_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124224_26	UniRef90	UniRef90_A0A1Z1SW54	Transcriptional regulator	NA
UHGV-0124224_26	eggNOG-mapper	585.DR95_2798	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124224_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124224_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124224_27	eggNOG-mapper	634499.EpC_00500	NA	NA