UHGV-0124238

Genome information

Genome length 32,191 bps

CDS count 42

Completeness 78.53% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124238
vOTU ID	vOTU-015352
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_337438
BioSample	SAMN00849584
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.05
Jumbo phage	No

Genome content
Genome length	32,191 bps
GC content	36.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.07%
Average CDS length	722.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124238_1	Structural annotation	PF10922	NA	NA
UHGV-0124238_2	Structural annotation	PF17574	NA	NA
UHGV-0124238_3	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0124238_3	PHROG	phrog_1499	NA	unknown function
UHGV-0124238_3	UniRef90	UniRef90_A0A1C6CT75	Chromosome segregation protein	NA
UHGV-0124238_3	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0124238_3	Pfam	PF13476	AAA domain	AAA_23
UHGV-0124238_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0124238_3	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0124238_4	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124238_4	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0124238_4	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-0124238_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-0124238_4	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0124238_5	PHROG	phrog_2698	NA	unknown function
UHGV-0124238_5	UniRef90	UniRef90_UPI001106D01D	NA	NA
UHGV-0124238_5	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-0124238_5	Structural annotation	PF05037	NA	NA
UHGV-0124238_6	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0124238_6	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0124238_6	UniRef90	UniRef90_A0A1C6CSB9	Excinuclease ABC subunit B	NA
UHGV-0124238_6	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0124238_6	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0124238_6	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0124238_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0124238_6	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0124238_6	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0124238_7	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0124238_7	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0124238_7	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-0124238_7	eggNOG-mapper	1232449.BAHV02000008_gene621	Primase C terminal 2 (PriCT-2)	NA
UHGV-0124238_7	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0124238_7	Pfam	PF13481	AAA domain	AAA_25
UHGV-0124238_7	COG	COG3598	RecA-family ATPase	NA
UHGV-0124238_7	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0124238_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0124238_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124238_8	UniRef90	UniRef90_A0A1C6CSJ7	Holliday junction resolvase	NA
UHGV-0124238_8	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0124238_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0124238_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0124238_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0124238_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124238_11	UniRef90	UniRef90_A0A2K9P072	RNA polymerase subunit sigma-24	NA
UHGV-0124238_11	eggNOG-mapper	875454.BAEW01000002_gene486	NA	NA
UHGV-0124238_11	Structural annotation	PF07374	NA	NA
UHGV-0124238_12	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0124238_12	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0124238_12	eggNOG-mapper	469618.FVAG_00793	transposase activity	NA
UHGV-0124238_12	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0124238_12	Structural annotation	PF07141	NA	NA
UHGV-0124238_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124238_13	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0124238_13	UniRef90	UniRef90_F9MMJ8	Phage terminase, large subunit, PBSX family	NA
UHGV-0124238_13	eggNOG-mapper	1000569.HMPREF1040_0200	Phage terminase, large subunit	NA
UHGV-0124238_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0124238_13	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0124238_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124238_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124238_13	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0124238_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0124238_14	UniRef90	UniRef90_A0A6L5T8J5	Phage portal protein	NA
UHGV-0124238_14	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0124238_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0124238_16	PHROG	phrog_8680	NA	unknown function
UHGV-0124238_16	UniRef90	UniRef90_A0A416S3B0	NA	NA
UHGV-0124238_16	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0124238_16	Pfam	PF14386	NA	DUF4417
UHGV-0124238_16	Structural annotation	PF14386	NA	NA
UHGV-0124238_17	PHROG	phrog_9479	NA	unknown function
UHGV-0124238_17	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-0124238_17	Structural annotation	PF15529	NA	NA
UHGV-0124238_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0124238_19	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-0124238_19	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0124238_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0124238_19	COG	COG2369	NA	NA
UHGV-0124238_19	Structural annotation	PF06152	NA	NA
UHGV-0124238_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0124238_20	UniRef90	UniRef90_A0A174K280	Phage minor structural protein GP20	NA
UHGV-0124238_20	eggNOG-mapper	883114.HMPREF9709_01195	Phage minor structural protein GP20	NA
UHGV-0124238_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0124238_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0124238_21	UniRef90	UniRef90_A0A7X5KS43	N4-gp56 family major capsid protein	NA
UHGV-0124238_21	eggNOG-mapper	1430331.EP10_10365	NA	NA
UHGV-0124238_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0124238_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0124238_24	PHROG	phrog_3366	NA	unknown function
UHGV-0124238_24	Pfam	PF20536	NA	DUF6751
UHGV-0124238_24	Structural annotation	PF20536	NA	NA
UHGV-0124238_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0124238_25	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0124238_25	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0124238_25	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0124238_25	Structural annotation	PF11114	NA	NA
UHGV-0124238_26	Structural annotation	PF12691	NA	NA
UHGV-0124238_27	PHROG	phrog_3099	NA	unknown function
UHGV-0124238_27	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-0124238_27	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0124238_28	PHROG	phrog_11299	NA	unknown function
UHGV-0124238_29	PHROG	phrog_706	NA	unknown function
UHGV-0124238_29	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0124238_29	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0124238_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0124238_29	Structural annotation	PF06854	NA	NA
UHGV-0124238_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0124238_30	eggNOG-mapper	1120746.CCNL01000014_gene2105	tape measure	NA
UHGV-0124238_30	COG	COG1511	NA	NA
UHGV-0124238_31	PHROG	phrog_1194	NA	unknown function
UHGV-0124238_31	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0124238_31	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0124238_32	PHROG	phrog_13879	NA	unknown function
UHGV-0124238_32	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-0124238_33	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0124238_34	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-0124238_36	PHROG	phrog_937	hemolysin	other
UHGV-0124238_37	PHROG	phrog_443	holin	lysis
UHGV-0124238_37	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0124238_37	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0124238_37	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0124238_37	Structural annotation	PF16945	NA	NA
UHGV-0124238_38	PHROG	phrog_918	NA	unknown function
UHGV-0124238_38	UniRef90	UniRef90_UPI001CCDC3EB	NA	NA
UHGV-0124238_38	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0124238_38	Pfam	PF19791	NA	DUF6275
UHGV-0124238_38	Structural annotation	PF19791	NA	NA
UHGV-0124238_39	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0124238_39	PHROG	phrog_435	endolysin	lysis
UHGV-0124238_39	UniRef90	UniRef90_A0A1C6E2B1	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124238_39	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124238_39	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0124238_39	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124238_39	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0124238_40	PHROG	phrog_10390	NA	unknown function
UHGV-0124238_40	UniRef90	UniRef90_A0A415Z633	NA	NA
UHGV-0124238_40	eggNOG-mapper	679192.HMPREF9013_1310	NA	NA
UHGV-0124238_40	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0124238_40	COG	COG3600	NA	NA
UHGV-0124238_40	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0124238_41	eggNOG-mapper	1227268.HMPREF1552_00029	NA	NA
UHGV-0124238_42	Pfam	PF20124	NA	DUF6514
UHGV-0124238_42	Structural annotation	PF20124	NA	NA