UHGV-0124240

Genome information

Genome length 23,154 bps

CDS count 45

Completeness 58.25% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124240
vOTU ID	vOTU-040124
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_321461
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.47
Jumbo phage	No

Genome content
Genome length	23,154 bps
GC content	54.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	96.08%
Average CDS length	500.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124240_1	PHROG	phrog_32744	NA	unknown function
UHGV-0124240_1	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0124240_1	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0124240_2	PHROG	phrog_1194	NA	unknown function
UHGV-0124240_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0124240_3	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0124240_3	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0124240_3	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0124240_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0124240_3	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0124240_5	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0124240_6	PHROG	phrog_885	major tail protein	tail
UHGV-0124240_6	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0124240_6	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0124240_6	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0124240_7	PHROG	phrog_17405	head protein	head and packaging
UHGV-0124240_7	Structural annotation	PF11367	NA	NA
UHGV-0124240_8	PHROG	phrog_17977	NA	unknown function
UHGV-0124240_8	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0124240_8	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0124240_10	PHROG	phrog_544	major head protein	head and packaging
UHGV-0124240_10	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0124240_10	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0124240_10	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0124240_11	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0124240_11	Structural annotation	PF06810	NA	NA
UHGV-0124240_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124240_13	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0124240_13	eggNOG-mapper	386415.NT01CX_2170	NA	NA
UHGV-0124240_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124240_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0124240_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0124240_14	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0124240_14	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0124240_14	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0124240_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0124240_14	COG	COG2369	NA	NA
UHGV-0124240_14	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0124240_15	PHROG	phrog_28328	NA	unknown function
UHGV-0124240_15	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0124240_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0124240_16	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0124240_16	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0124240_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124240_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0124240_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124240_17	PHROG	phrog_10250	NA	unknown function
UHGV-0124240_17	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0124240_17	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0124240_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0124240_17	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0124240_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124240_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124240_17	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0124240_18	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0124240_18	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0124240_18	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0124240_18	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0124240_18	Structural annotation	PF16677	NA	NA
UHGV-0124240_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124240_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124240_19	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0124240_19	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0124240_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124240_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124240_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0124240_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0124240_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0124240_20	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0124240_20	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0124240_20	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0124240_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0124240_20	COG	COG0863	DNA modification methylase	NA
UHGV-0124240_20	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0124240_21	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0124240_22	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0124240_25	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124240_25	UniRef90	UniRef90_UPI0005288167	NA	NA
UHGV-0124240_25	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0124240_25	Pfam	PF06356	NA	DUF1064
UHGV-0124240_25	Structural annotation	PF06356	NA	NA
UHGV-0124240_27	PHROG	phrog_22543	NA	unknown function
UHGV-0124240_28	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0124240_29	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0124240_29	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0124240_29	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0124240_29	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0124240_30	PHROG	phrog_38832	NA	unknown function
UHGV-0124240_30	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0124240_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0124240_34	PHROG	phrog_17284	NA	unknown function
UHGV-0124240_34	UniRef90	UniRef90_A0A1Q6RQI3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0124240_34	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0124240_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0124240_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0124240_34	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0124240_35	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0124240_35	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0124240_35	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0124240_35	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0124240_35	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0124240_35	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0124240_35	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0124240_36	PHROG	phrog_16304	NA	unknown function
UHGV-0124240_36	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-0124240_36	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-0124240_36	Pfam	PF19808	NA	DUF6291
UHGV-0124240_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124240_36	Structural annotation	PF19808	NA	NA
UHGV-0124240_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0124240_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0124240_38	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0124240_38	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0124240_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0124240_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0124240_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124240_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0124240_38	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0124240_39	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0124240_39	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124240_39	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-0124240_39	eggNOG-mapper	1121864.OMO_00979	HNH nucleases	NA
UHGV-0124240_39	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0124240_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124240_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0124240_40	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0124240_40	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0124240_40	Structural annotation	PF05772	NA	NA
UHGV-0124240_41	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124240_41	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0124240_41	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0124240_41	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0124240_44	Structural annotation	PF21715, MF_01804, TIGR00281, COG1386	NA	NA
UHGV-0124240_45	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0124240_45	PHROG	phrog_27197	NA	unknown function
UHGV-0124240_45	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-0124240_45	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0124240_45	Structural annotation	NF007410	NA	NA