UHGV-0124260

Genome information

Genome length 52,650 bps

CDS count 60

Completeness 99.08% (high-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124260
vOTU ID	vOTU-014148
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_331255
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.63
Jumbo phage	No

Genome content
Genome length	52,650 bps
GC content	45.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.38%
Average CDS length	821.15 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124260_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0124260_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0124260_1	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0124260_1	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0124260_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0124260_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0124260_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0124260_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0124260_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0124260_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124260_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124260_5	UniRef90	UniRef90_A0A316SAV3	Transcriptional regulator	NA
UHGV-0124260_5	eggNOG-mapper	431943.CKL_3317	transcriptional regulator	NA
UHGV-0124260_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0124260_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124260_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124260_5	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0124260_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0124260_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0124260_6	UniRef90	UniRef90_A0A316S6E7	HTH cro/C1-type domain-containing protein	NA
UHGV-0124260_6	eggNOG-mapper	1250278.JQNQ01000001_gene3158	transcriptional regulator	NA
UHGV-0124260_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124260_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0124260_6	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0124260_8	PHROG	phrog_14367	NA	unknown function
UHGV-0124260_8	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0124260_8	eggNOG-mapper	478749.BRYFOR_06242	LysM domain	NA
UHGV-0124260_8	Pfam	PF01476	LysM domain	LysM
UHGV-0124260_8	COG	COG1388	LysM repeat	NA
UHGV-0124260_8	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0124260_11	PHROG	phrog_1366	NA	unknown function
UHGV-0124260_11	UniRef90	UniRef90_UPI001EDFC883	ATP-binding protein	NA
UHGV-0124260_11	eggNOG-mapper	555779.Dthio_PD3616	SMART AAA ATPase	NA
UHGV-0124260_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0124260_11	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0124260_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0124260_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0124260_12	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0124260_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0124260_13	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0124260_13	UniRef90	UniRef90_UPI0011DDD220	helix-turn-helix domain-containing protein	NA
UHGV-0124260_13	eggNOG-mapper	1232453.BAIF02000016_gene3127	NA	NA
UHGV-0124260_13	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0124260_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0124260_13	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0124260_14	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0124260_14	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0124260_14	Structural annotation	PF11417	NA	NA
UHGV-0124260_16	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0124260_16	UniRef90	UniRef90_A0A348YZK3	Radical SAM protein	NA
UHGV-0124260_16	eggNOG-mapper	755731.Clo1100_1144	NA	NA
UHGV-0124260_16	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0124260_16	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0124260_18	PHROG	phrog_3878	NA	unknown function
UHGV-0124260_21	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0124260_21	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0124260_21	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0124260_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0124260_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0124260_26	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0124260_26	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0124260_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0124260_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0124260_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124260_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0124260_26	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0124260_27	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124260_27	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0124260_27	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0124260_27	Pfam	PF06356	NA	DUF1064
UHGV-0124260_27	Structural annotation	PF06356	NA	NA
UHGV-0124260_28	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0124260_28	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0124260_30	PHROG	phrog_2329	NA	unknown function
UHGV-0124260_30	UniRef90	UniRef90_UPI001A21AB60	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0124260_30	eggNOG-mapper	1120746.CCNL01000005_gene152	NA	NA
UHGV-0124260_30	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0124260_30	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0124260_31	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124260_31	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0124260_32	UniRef90	UniRef90_W1I432	Uncultured bacterium plasmid pRGI00226	NA
UHGV-0124260_34	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-0124260_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0124260_35	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0124260_35	UniRef90	UniRef90_A0A1I0K7H5	Phage terminase small subunit	NA
UHGV-0124260_35	eggNOG-mapper	1391647.AVSV01000003_gene1801	Terminase small subunit	NA
UHGV-0124260_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0124260_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0124260_35	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0124260_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124260_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0124260_36	UniRef90	UniRef90_A0A316S7L1	PBSX family phage terminase large subunit	NA
UHGV-0124260_36	eggNOG-mapper	1009370.ALO_12436	Phage terminase, large subunit	NA
UHGV-0124260_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0124260_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124260_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124260_36	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0124260_37	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0124260_37	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0124260_38	PHROG	phrog_156	portal protein	head and packaging
UHGV-0124260_38	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0124260_38	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-0124260_38	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0124260_38	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0124260_41	PHROG	phrog_334	major head protein	head and packaging
UHGV-0124260_41	UniRef90	UniRef90_A0A316SB53	N4-gp56 family major capsid protein	NA
UHGV-0124260_41	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0124260_41	Pfam	PF13252	NA	DUF4043
UHGV-0124260_41	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0124260_41	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0124260_42	PHROG	phrog_399	structural protein	head and packaging
UHGV-0124260_42	Pfam	PF20387	NA	DUF6682
UHGV-0124260_42	Structural annotation	PF20387	NA	NA
UHGV-0124260_43	PHROG	phrog_26466	NA	unknown function
UHGV-0124260_43	UniRef90	UniRef90_G9YK55	Fibronectin type III domain protein	NA
UHGV-0124260_43	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-0124260_43	COG	COG1511	NA	NA
UHGV-0124260_44	PHROG	phrog_2427	NA	unknown function
UHGV-0124260_44	eggNOG-mapper	706434.HMPREF9429_00512	NA	NA
UHGV-0124260_45	PHROG	phrog_4062	NA	unknown function
UHGV-0124260_46	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0124260_46	PHROG	phrog_819	tail protein	tail
UHGV-0124260_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0124260_46	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0124260_46	Structural annotation	PF10651	NA	NA
UHGV-0124260_48	eggNOG-mapper	478749.BRYFOR_07557	tail collar domain protein	NA
UHGV-0124260_48	COG	COG4675	Phage tail collar domain	NA
UHGV-0124260_50	PHROG	phrog_2837	tail protein	tail
UHGV-0124260_50	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0124260_50	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0124260_50	Pfam	PF14301	NA	DUF4376
UHGV-0124260_50	Structural annotation	PF14301	NA	NA
UHGV-0124260_51	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0124260_51	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0124260_52	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0124260_53	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0124260_53	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0124260_55	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0124260_55	UniRef90	UniRef90_A0A6I2UJK2	Transglycosylase SLT domain-containing protein	NA
UHGV-0124260_55	eggNOG-mapper	278957.ABEA03000004_gene4552	DEAD-like helicases superfamily	NA
UHGV-0124260_55	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0124260_55	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0124260_55	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0124260_55	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0124260_55	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0124260_58	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0124260_58	Structural annotation	PF21277	NA	NA