UHGV-0124282

Genome information

Genome length 45,102 bps

CDS count 49

Completeness 83.18% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124282
vOTU ID	vOTU-017616
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_328966
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.33
Jumbo phage	No

Genome content
Genome length	45,102 bps
GC content	53.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.57%
Average CDS length	854.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124282_1	KOfam	K14059	int; integrase	NA
UHGV-0124282_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0124282_1	UniRef90	UniRef90_UPI001C5FE7A1	phage integrase SAM-like domain-containing protein	NA
UHGV-0124282_1	eggNOG-mapper	272559.BF9343_2363	Phage integrase SAM-like domain	NA
UHGV-0124282_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0124282_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0124282_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0124282_1	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0124282_2	PHROG	phrog_26448	NA	unknown function
UHGV-0124282_2	eggNOG-mapper	742726.HMPREF9448_01214	NA	NA
UHGV-0124282_2	Pfam	PF20647	NA	DUF6808
UHGV-0124282_2	Structural annotation	PF20647	NA	NA
UHGV-0124282_3	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0124282_3	PHROG	phrog_181	endolysin	lysis
UHGV-0124282_3	UniRef90	UniRef90_A0A1M7D4A1	Putative chitinase	NA
UHGV-0124282_3	eggNOG-mapper	1121957.ATVL01000006_gene2666	Chitinase class I	NA
UHGV-0124282_3	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0124282_3	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0124282_3	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0124282_4	eggNOG-mapper	880074.BARVI_05555	NA	NA
UHGV-0124282_5	Structural annotation	PF09056	NA	NA
UHGV-0124282_7	PHROG	phrog_33450	tail fiber protein	tail
UHGV-0124282_8	PHROG	phrog_17422	NA	unknown function
UHGV-0124282_8	UniRef90	UniRef90_A0A416VT64	Polymer-forming cytoskeletal protein	NA
UHGV-0124282_8	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0124282_8	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0124282_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0124282_9	PHROG	phrog_6305	tail protein	tail
UHGV-0124282_9	eggNOG-mapper	411901.BACCAC_01133	NA	NA
UHGV-0124282_9	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0124282_10	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0124282_10	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0124282_10	UniRef90	UniRef90_A0A1I2T4T3	TMP_3 domain-containing protein	NA
UHGV-0124282_10	eggNOG-mapper	1121100.JCM6294_570	NA	NA
UHGV-0124282_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0124282_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0124282_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0124282_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0124282_12	PHROG	phrog_12247	NA	unknown function
UHGV-0124282_12	eggNOG-mapper	886379.AEWI01000001_gene1731	NA	NA
UHGV-0124282_13	UniRef90	UniRef90_A0A6I0JJ80	BACON domain-containing protein	NA
UHGV-0124282_13	eggNOG-mapper	1122971.BAME01000006_gene895	NA	NA
UHGV-0124282_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0124282_14	PHROG	phrog_5597	NA	unknown function
UHGV-0124282_14	eggNOG-mapper	1122971.BAME01000006_gene896	NA	NA
UHGV-0124282_14	Structural annotation	PF05657	NA	NA
UHGV-0124282_15	PHROG	phrog_5377	NA	unknown function
UHGV-0124282_15	UniRef90	UniRef90_UPI001897E37F	HK97 gp10 family phage protein	NA
UHGV-0124282_15	eggNOG-mapper	449673.BACSTE_02166	NA	NA
UHGV-0124282_16	PHROG	phrog_19449	NA	unknown function
UHGV-0124282_16	eggNOG-mapper	1227266.HMPREF1551_00510	NA	NA
UHGV-0124282_16	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0124282_17	PHROG	phrog_32776	NA	unknown function
UHGV-0124282_17	eggNOG-mapper	1122971.BAME01000006_gene899	NA	NA
UHGV-0124282_17	Structural annotation	PF20449	NA	NA
UHGV-0124282_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0124282_18	UniRef90	UniRef90_UPI00101C74EF	major capsid protein	NA
UHGV-0124282_18	eggNOG-mapper	1122971.BAME01000006_gene900	Phage major capsid protein E	NA
UHGV-0124282_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0124282_18	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0124282_19	eggNOG-mapper	445970.ALIPUT_01658	NA	NA
UHGV-0124282_19	Structural annotation	PF21430, MF_00014, NF009633	NA	NA
UHGV-0124282_20	PHROG	phrog_5824	NA	unknown function
UHGV-0124282_20	eggNOG-mapper	762982.HMPREF9442_01176	NA	NA
UHGV-0124282_21	PHROG	phrog_35295	NA	unknown function
UHGV-0124282_21	UniRef90	UniRef90_A0A6A7TZS6	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0124282_21	eggNOG-mapper	886379.AEWI01000001_gene1744	NA	NA
UHGV-0124282_21	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0124282_21	Structural annotation	PF06152, PF18813	NA	NA
UHGV-0124282_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0124282_22	UniRef90	UniRef90_A0A6A7U1Z9	Phage portal protein	NA
UHGV-0124282_22	eggNOG-mapper	1122971.BAME01000006_gene907	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0124282_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124282_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0124282_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0124282_23	UniRef90	UniRef90_A0A6A7TZS8	Phage terminase large subunit	NA
UHGV-0124282_23	eggNOG-mapper	357276.EL88_12715	domain protein	NA
UHGV-0124282_23	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0124282_23	COG	COG5410	NA	NA
UHGV-0124282_23	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0124282_24	UniRef90	UniRef90_A0A264YA85	NA	NA
UHGV-0124282_24	Pfam	PF18932	NA	DUF5681
UHGV-0124282_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0124282_25	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0124282_25	UniRef90	UniRef90_A0A264YBM8	N6_N4_Mtase domain-containing protein	NA
UHGV-0124282_25	eggNOG-mapper	1118057.CAGX01000020_gene1624	ParB-like nuclease domain	NA
UHGV-0124282_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0124282_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0124282_25	COG	COG0863	DNA modification methylase	NA
UHGV-0124282_27	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124282_27	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-0124282_27	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0124282_30	PHROG	phrog_16718	NA	unknown function
UHGV-0124282_30	eggNOG-mapper	1415775.U729_3168	NA	NA
UHGV-0124282_31	eggNOG-mapper	1392486.JIAF01000004_gene824	NA	NA
UHGV-0124282_36	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0124282_36	eggNOG-mapper	1118057.CAGX01000058_gene96	Transcriptional regulator	NA
UHGV-0124282_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0124282_37	PHROG	phrog_11501	NA	unknown function
UHGV-0124282_37	UniRef90	UniRef90_F3QQV3	Conserved domain protein	NA
UHGV-0124282_37	eggNOG-mapper	1122971.BAME01000058_gene4479	NA	NA
UHGV-0124282_37	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0124282_38	PHROG	phrog_12688	NA	unknown function
UHGV-0124282_38	eggNOG-mapper	1347393.HG726021_gene516	NA	NA
UHGV-0124282_38	Structural annotation	PF10382, TIGR02276	NA	NA
UHGV-0124282_39	PHROG	phrog_15937	NA	unknown function
UHGV-0124282_39	eggNOG-mapper	742727.HMPREF9447_04879	NA	NA
UHGV-0124282_40	PHROG	phrog_11581	NA	unknown function
UHGV-0124282_40	eggNOG-mapper	445970.ALIPUT_02690	NA	NA
UHGV-0124282_41	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0124282_41	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0124282_41	UniRef90	UniRef90_A0A096ANX7	Lactamase_B domain-containing protein	NA
UHGV-0124282_41	eggNOG-mapper	1392486.JIAF01000004_gene2638	NA	NA
UHGV-0124282_41	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0124282_41	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0124282_41	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0124282_42	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0124282_42	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124282_42	UniRef90	UniRef90_UPI001D14202F	recombinase RecT	NA
UHGV-0124282_42	eggNOG-mapper	1392486.JIAF01000004_gene2637	RecT family	NA
UHGV-0124282_42	Pfam	PF03837	RecT family	RecT
UHGV-0124282_42	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0124282_42	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0124282_43	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124282_43	eggNOG-mapper	742767.HMPREF9456_02044	NA	NA
UHGV-0124282_43	AcrCatalog	cluster_113756	NA	NA
UHGV-0124282_43	Structural annotation	PF17375	NA	NA
UHGV-0124282_44	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0124282_44	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124282_44	UniRef90	UniRef90_A0A096CU16	AAA_15 domain-containing protein	NA
UHGV-0124282_44	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0124282_44	Pfam	PF13476	AAA domain	AAA_23
UHGV-0124282_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0124282_44	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0124282_45	UniRef90	UniRef90_A0A4Q0J079	DNA-binding protein	NA
UHGV-0124282_45	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0124282_45	Structural annotation	PF12728, MF_01155, NF040990, COG3311	NA	NA
UHGV-0124282_49	UniRef90	UniRef90_A0A413HH95	XRE family transcriptional regulator	NA
UHGV-0124282_49	Structural annotation	PF01381, MF_00535, NF041575, COG1396	NA	NA