UHGV-0124368

Genome information

Genome length 24,645 bps

CDS count 38

Completeness 50.28% (medium-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124368
vOTU ID	vOTU-024569
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_333410
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.17
Jumbo phage	No

Genome content
Genome length	24,645 bps
GC content	49.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	85.98%
Average CDS length	561.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124368_1	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0124368_1	eggNOG-mapper	573.JG24_08655	COG5281, Phage-related minor tail protein	NA
UHGV-0124368_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0124368_2	PHROG	phrog_25875	tail assembly chaperone	tail
UHGV-0124368_2	UniRef90	UniRef90_A0A7B0QJ57	Phage tail protein	NA
UHGV-0124368_2	eggNOG-mapper	573.JG24_08650	Phage tail assembly chaperone protein, TAC	NA
UHGV-0124368_2	Pfam	PF16462	Phage tail assembly chaperone protein, TAC	Phage_TAC_14
UHGV-0124368_2	Structural annotation	PF16462, TIGR01674	NA	NA
UHGV-0124368_3	PHROG	phrog_158	major tail protein	tail
UHGV-0124368_3	UniRef90	UniRef90_A0A378BD39	Major tail shaft subunit	NA
UHGV-0124368_3	eggNOG-mapper	573.JG24_08645	Phage tail tube protein family	NA
UHGV-0124368_3	Pfam	PF16463	Phage tail tube protein family	Phage_TTP_13
UHGV-0124368_3	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0124368_4	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124368_4	UniRef90	UniRef90_Q6UAX1	Gp11	NA
UHGV-0124368_4	eggNOG-mapper	573.JG24_08640	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0124368_4	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124368_4	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0124368_4	Structural annotation	TIGR01725	NA	NA
UHGV-0124368_5	PHROG	phrog_347	tail terminator	connector
UHGV-0124368_5	UniRef90	UniRef90_Q6UAX2	Gp10	NA
UHGV-0124368_5	eggNOG-mapper	573.JG24_08635	NA	NA
UHGV-0124368_5	Structural annotation	PF12691	NA	NA
UHGV-0124368_6	PHROG	phrog_25	head closure Hc1	connector
UHGV-0124368_6	UniRef90	UniRef90_Q6UAX3	Gp9	NA
UHGV-0124368_6	eggNOG-mapper	573.JG24_08630	Phage head-tail joining protein	NA
UHGV-0124368_6	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0124368_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0124368_7	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0124368_7	UniRef90	UniRef90_UPI001D0DA490	head-tail connector protein	NA
UHGV-0124368_7	eggNOG-mapper	573.JG24_08625	Phage gp6-like head-tail connector protein	NA
UHGV-0124368_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0124368_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0124368_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0124368_8	PHROG	phrog_10196	NA	unknown function
UHGV-0124368_8	UniRef90	UniRef90_A0A7H4MHM1	Gp7	NA
UHGV-0124368_8	eggNOG-mapper	573.JG24_08620	NA	NA
UHGV-0124368_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0124368_9	UniRef90	UniRef90_Q6UAX6	Major capsid head protein	NA
UHGV-0124368_9	eggNOG-mapper	573.JG24_08615	Phage capsid family	NA
UHGV-0124368_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0124368_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0124368_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0124368_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0124368_10	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-0124368_10	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-0124368_10	UniRef90	UniRef90_A0A377WGE0	Serine peptidase	NA
UHGV-0124368_10	eggNOG-mapper	573.JG24_08610	peptidase	NA
UHGV-0124368_10	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-0124368_10	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0124368_10	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-0124368_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0124368_11	UniRef90	UniRef90_Q6UAX8	Putative portal protein	NA
UHGV-0124368_11	eggNOG-mapper	573.JG24_08605	portal protein	NA
UHGV-0124368_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0124368_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0124368_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0124368_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0124368_12	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0124368_12	UniRef90	UniRef90_Q6UAX9	Gp3	NA
UHGV-0124368_12	eggNOG-mapper	255431.Q6UAX9_9CAUD	NA	NA
UHGV-0124368_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0124368_13	UniRef90	UniRef90_A0A2Z3F3W1	Terminase large subunit	NA
UHGV-0124368_13	eggNOG-mapper	573.JG24_08595	terminase	NA
UHGV-0124368_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0124368_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0124368_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0124368_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0124368_14	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0124368_14	UniRef90	UniRef90_A0A0B7GCD5	Phage terminase small subunit P27 family	NA
UHGV-0124368_14	eggNOG-mapper	573.JG24_08590	Phage terminase, small subunit	NA
UHGV-0124368_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0124368_14	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0124368_14	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0124368_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0124368_15	PHROG	phrog_2473	NA	unknown function
UHGV-0124368_15	UniRef90	UniRef90_Q6UAS0	Gp62	NA
UHGV-0124368_15	eggNOG-mapper	573.JG24_08585	NA	NA
UHGV-0124368_15	Structural annotation	PF13028	NA	NA
UHGV-0124368_16	PHROG	phrog_4567	NA	unknown function
UHGV-0124368_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0124368_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124368_17	UniRef90	UniRef90_W9BG08	HNHc domain-containing protein	NA
UHGV-0124368_17	eggNOG-mapper	573.JG24_08580	Endonuclease	NA
UHGV-0124368_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0124368_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124368_17	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0124368_18	PHROG	phrog_7679	NA	unknown function
UHGV-0124368_19	PHROG	phrog_2536	Rz-like spanin	lysis
UHGV-0124368_19	UniRef90	UniRef90_UPI001328D4BC	DinI-like family protein	NA
UHGV-0124368_19	eggNOG-mapper	573.JG24_08565	NA	NA
UHGV-0124368_20	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0124368_20	PHROG	phrog_7	endolysin	lysis
UHGV-0124368_20	UniRef90	UniRef90_A0A3Q9UBJ8	Lysozyme	NA
UHGV-0124368_20	eggNOG-mapper	573.JG24_08560	lysozyme	NA
UHGV-0124368_20	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0124368_20	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0124368_20	HAMAP	MF_04110	Endolysin	NA
UHGV-0124368_20	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0124368_21	PHROG	phrog_9876	holin	lysis
UHGV-0124368_21	UniRef90	UniRef90_A4WC48	Lysis S family protein	NA
UHGV-0124368_21	eggNOG-mapper	573.JG24_08555	PFAM Lysis S family protein	NA
UHGV-0124368_21	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0124368_21	Structural annotation	PF04971	NA	NA
UHGV-0124368_23	KOfam	K06899	ndpA; nucleoid-associated protein	NA
UHGV-0124368_23	PHROG	phrog_3767	nucleoid associated protein	DNA, RNA and nucleotide metabolism
UHGV-0124368_23	UniRef90	UniRef90_A0A066R4Y0	Nucleoid-associated protein	NA
UHGV-0124368_23	eggNOG-mapper	1115515.EV102420_11_00330	37-kD nucleoid-associated bacterial protein	NA
UHGV-0124368_23	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0124368_23	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0124368_24	PHROG	phrog_5023	NA	unknown function
UHGV-0124368_24	eggNOG-mapper	1115515.EV102420_11_00340	NA	NA
UHGV-0124368_25	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0124368_25	UniRef90	UniRef90_UPI0009BC315F	antitermination protein	NA
UHGV-0124368_25	eggNOG-mapper	701347.Entcl_1855	Phage antitermination protein Q	NA
UHGV-0124368_25	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0124368_25	Structural annotation	PF06530, MF_00245, TIGR02999, COG2739	NA	NA
UHGV-0124368_26	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124368_26	UniRef90	UniRef90_A0A1X9TPI1	NA	NA
UHGV-0124368_26	eggNOG-mapper	35703.DQ02_24170	NA	NA
UHGV-0124368_26	Pfam	PF06147	NA	DUF968
UHGV-0124368_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124368_26	Structural annotation	PF06147	NA	NA
UHGV-0124368_27	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-0124368_27	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0124368_27	UniRef90	UniRef90_W9BGJ5	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0124368_27	eggNOG-mapper	371042.NG99_23650	Site-specific DNA-methyltransferase (Adenine-specific)	NA
UHGV-0124368_27	PADLOC	oMTase_00018	orphan methyltransferase	RM
UHGV-0124368_27	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0124368_27	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0124368_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0124368_27	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0124368_28	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0124368_28	UniRef90	UniRef90_A0A7U7F836	Phg_2220_C domain-containing protein	NA
UHGV-0124368_28	eggNOG-mapper	1399774.JDWH01000016_gene3451	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0124368_28	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0124368_28	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0124368_28	Structural annotation	PF13463, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0124368_29	PHROG	phrog_1343	NA	unknown function
UHGV-0124368_29	UniRef90	UniRef90_A0A2J4YCY3	NA	NA
UHGV-0124368_29	eggNOG-mapper	1440052.EAKF1_ch1459c	NA	NA
UHGV-0124368_29	Pfam	PF13973	NA	DUF4222
UHGV-0124368_30	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0124368_30	eggNOG-mapper	399742.Ent638_2618	NA	NA
UHGV-0124368_30	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0124368_30	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0124368_30	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0124368_31	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-0124368_31	PHROG	phrog_409	transcriptional regulator	transcription regulation
UHGV-0124368_31	UniRef90	UniRef90_A0A8I0G7K7	Cro/Cl family transcriptional regulator	NA
UHGV-0124368_31	eggNOG-mapper	1115515.EV102420_11_00450	DNA-binding transcriptional regulator Cro	NA
UHGV-0124368_31	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-0124368_31	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0124368_31	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0124368_32	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0124368_32	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0124368_32	UniRef90	UniRef90_A0A090V113	LexA repressor	NA
UHGV-0124368_32	eggNOG-mapper	1115515.EV102420_11_00460	Helix-turn-helix domain	NA
UHGV-0124368_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124368_32	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0124368_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0124368_32	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0124368_33	PHROG	phrog_1244	NA	unknown function
UHGV-0124368_33	UniRef90	UniRef90_A0A376HVU9	Putative coiled-coil protein from phage origin	NA
UHGV-0124368_33	eggNOG-mapper	469595.CSAG_00936	NA	NA
UHGV-0124368_34	PHROG	phrog_15091	NA	unknown function
UHGV-0124368_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0124368_35	PHROG	phrog_25613	NA	unknown function
UHGV-0124368_35	UniRef90	UniRef90_A0A8A6EWG2	HTH_ParB domain-containing protein	NA
UHGV-0124368_35	eggNOG-mapper	573.JG24_10860	NA	NA
UHGV-0124368_35	Structural annotation	PF02195, PF08535, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0124368_36	PHROG	phrog_1226	NA	unknown function
UHGV-0124368_36	UniRef90	UniRef90_UPI0003BEF120	YdaS family helix-turn-helix protein	NA
UHGV-0124368_36	eggNOG-mapper	1115653.S5MDS1_9CAUD	NA	NA
UHGV-0124368_37	PHROG	phrog_1266	excisionase	integration and excision
UHGV-0124368_37	UniRef90	UniRef90_A0A483F259	NA	NA
UHGV-0124368_37	eggNOG-mapper	82996.sch_09655	NA	NA
UHGV-0124368_37	Pfam	PF13986	NA	DUF4224
UHGV-0124368_37	Structural annotation	PF13986	NA	NA
UHGV-0124368_38	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0124368_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0124368_38	UniRef90	UniRef90_A0A168S277	Lambda integrase	NA
UHGV-0124368_38	eggNOG-mapper	932677.PAJ_0745	Belongs to the 'phage' integrase family	NA
UHGV-0124368_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124368_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0124368_38	Structural annotation	PF00589, PF12834, PF12167, MF_01807, NF001399, NF041908, COG4974	NA	NA