UHGV-0124369

Genome information

vOTU vOTU-019248

Genome length 45,865 bps

CDS count 70

Completeness 89.44% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124369
vOTU ID	vOTU-019248
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_333414
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.26
Jumbo phage	No

Genome content
Genome length	45,865 bps
GC content	41.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	93.73%
Average CDS length	617.87 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124369_1	UniRef90	UniRef90_R5YHC1	Ribosomal protein L7/L12	NA
UHGV-0124369_1	eggNOG-mapper	1280696.ATVY01000086_gene2001	NA	NA
UHGV-0124369_2	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-0124369_3	PHROG	phrog_87	metallo-protease	other
UHGV-0124369_3	UniRef90	UniRef90_R6EG79	Peptidase_M78 domain-containing protein	NA
UHGV-0124369_3	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0124369_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0124369_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0124369_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0124369_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0124369_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124369_4	UniRef90	UniRef90_R6DXM6	Predicted transcriptional regulators	NA
UHGV-0124369_4	eggNOG-mapper	1232443.BAIA02000007_gene674	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124369_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0124369_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124369_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0124369_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0124369_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0124369_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124369_5	UniRef90	UniRef90_R6DN72	Helix-turn-helix protein	NA
UHGV-0124369_5	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0124369_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124369_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0124369_5	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0124369_6	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0124369_7	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0124369_7	UniRef90	UniRef90_A0A415G6V9	NA	NA
UHGV-0124369_7	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0124369_7	Structural annotation	COG2250	NA	NA
UHGV-0124369_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0124369_8	UniRef90	UniRef90_A0A350XUK9	HTH cro/C1-type domain-containing protein	NA
UHGV-0124369_8	eggNOG-mapper	86416.Clopa_0315	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124369_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124369_10	PHROG	phrog_26314	NA	unknown function
UHGV-0124369_11	PHROG	phrog_22529	NA	unknown function
UHGV-0124369_11	UniRef90	UniRef90_A0A355KXV5	3D domain-containing protein	NA
UHGV-0124369_11	eggNOG-mapper	537007.BLAHAN_05080	3D domain	NA
UHGV-0124369_11	Pfam	PF06725	3D domain	3D
UHGV-0124369_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0124369_11	Structural annotation	PF06725, MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0124369_13	PHROG	phrog_674	NA	unknown function
UHGV-0124369_13	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0124369_13	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0124369_13	Pfam	PF07083	NA	DUF1351
UHGV-0124369_13	Structural annotation	PF07083	NA	NA
UHGV-0124369_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0124369_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124369_14	UniRef90	UniRef90_A0A355KWE4	Recombinase	NA
UHGV-0124369_14	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0124369_14	Pfam	PF03837	RecT family	RecT
UHGV-0124369_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0124369_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0124369_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0124369_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0124369_15	UniRef90	UniRef90_A0A355KXN6	Lactamase_B domain-containing protein	NA
UHGV-0124369_15	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0124369_15	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0124369_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0124369_15	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0124369_16	PHROG	phrog_398	NA	unknown function
UHGV-0124369_16	UniRef90	UniRef90_UPI001E4CD732	putative HNHc nuclease	NA
UHGV-0124369_16	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0124369_16	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0124369_16	Structural annotation	PF16784	NA	NA
UHGV-0124369_17	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0124369_17	UniRef90	UniRef90_A0A355KVK1	NA	NA
UHGV-0124369_17	eggNOG-mapper	428125.CLOLEP_01821	NA	NA
UHGV-0124369_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0124369_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0124369_17	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0124369_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0124369_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0124369_18	UniRef90	UniRef90_A0A355KVR8	AAA domain-containing protein	NA
UHGV-0124369_18	eggNOG-mapper	1473546.CH76_01850	IstB-like ATP binding protein	NA
UHGV-0124369_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0124369_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0124369_18	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0124369_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0124369_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0124369_19	UniRef90	UniRef90_R6E553	DNA methylase family protein	NA
UHGV-0124369_19	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0124369_19	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0124369_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0124369_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0124369_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0124369_19	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0124369_22	PHROG	phrog_38338	NA	unknown function
UHGV-0124369_22	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0124369_22	eggNOG-mapper	665956.HMPREF1032_03098	NA	NA
UHGV-0124369_22	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0124369_23	PHROG	phrog_8470	NA	unknown function
UHGV-0124369_23	UniRef90	UniRef90_A0A7G8TD95	PcfJ domain-containing protein	NA
UHGV-0124369_23	eggNOG-mapper	1235802.C823_05703	PcfJ-like protein	NA
UHGV-0124369_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0124369_23	Structural annotation	PF14284	NA	NA
UHGV-0124369_24	PHROG	phrog_3253	NA	unknown function
UHGV-0124369_24	UniRef90	UniRef90_A0A355KVS1	Resolvase	NA
UHGV-0124369_24	eggNOG-mapper	272563.CD630_29420	NA	NA
UHGV-0124369_25	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0124369_25	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0124369_25	UniRef90	UniRef90_A0A349DE48	Beta sliding clamp	NA
UHGV-0124369_25	eggNOG-mapper	1235793.C809_02201	DNA polymerase III beta subunit	NA
UHGV-0124369_25	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0124369_25	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0124369_25	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0124369_25	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0124369_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0124369_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0124369_26	UniRef90	UniRef90_A0A355KXP4	Single-stranded DNA-binding protein	NA
UHGV-0124369_26	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0124369_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0124369_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0124369_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124369_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0124369_26	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0124369_29	PHROG	phrog_4973	NA	unknown function
UHGV-0124369_29	UniRef90	UniRef90_R5Y7B1	Conserved domain protein	NA
UHGV-0124369_29	eggNOG-mapper	339671.Asuc_1218	Helix-turn-helix domain	NA
UHGV-0124369_29	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0124369_29	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0124369_30	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124369_30	UniRef90	UniRef90_A0A830TZW4	NA	NA
UHGV-0124369_30	eggNOG-mapper	1111134.HMPREF1253_1197	NA	NA
UHGV-0124369_30	Pfam	PF06356	NA	DUF1064
UHGV-0124369_30	Structural annotation	PF06356	NA	NA
UHGV-0124369_31	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0124369_31	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0124369_31	UniRef90	UniRef90_R5YVN2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0124369_31	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0124369_31	Pfam	PF00692	dUTPase	dUTPase
UHGV-0124369_31	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0124369_31	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0124369_31	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0124369_35	Structural annotation	NF041288, COG4830	NA	NA
UHGV-0124369_37	PHROG	phrog_10714	NA	unknown function
UHGV-0124369_42	PHROG	phrog_1558	NA	unknown function
UHGV-0124369_42	UniRef90	UniRef90_A0A2N5P3K0	HTH_11 domain-containing protein	NA
UHGV-0124369_42	eggNOG-mapper	665956.HMPREF1032_03078	NA	NA
UHGV-0124369_44	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0124369_44	UniRef90	UniRef90_UPI001D11A7BB	phage terminase small subunit	NA
UHGV-0124369_44	eggNOG-mapper	457412.RSAG_04668	NA	NA
UHGV-0124369_44	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0124369_44	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0124369_44	COG	COG5484	NA	NA
UHGV-0124369_44	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0124369_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124369_45	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0124369_45	UniRef90	UniRef90_A0A349DCJ8	PBSX family phage terminase large subunit	NA
UHGV-0124369_45	eggNOG-mapper	1032362.F6K8Q6_9CAUD	DNA packaging	NA
UHGV-0124369_45	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0124369_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124369_45	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0124369_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0124369_46	UniRef90	UniRef90_A0A1H7MQM5	Phage portal protein, putative, A118 family	NA
UHGV-0124369_46	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0124369_46	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0124369_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0124369_47	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0124369_47	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0124369_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0124369_47	COG	COG2369	NA	NA
UHGV-0124369_47	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0124369_49	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0124369_49	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-0124369_49	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0124369_49	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0124369_50	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0124369_50	UniRef90	UniRef90_A0A355KUP4	t-SNARE coiled-coil homology domain-containing protein	NA
UHGV-0124369_50	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0124369_50	Structural annotation	PF06810	NA	NA
UHGV-0124369_51	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0124369_51	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0124369_53	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0124369_53	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0124369_54	PHROG	phrog_3366	NA	unknown function
UHGV-0124369_54	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0124369_54	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0124369_55	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0124369_55	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0124369_55	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0124369_55	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0124369_55	Structural annotation	PF11114	NA	NA
UHGV-0124369_56	PHROG	phrog_3266	tail completion	connector
UHGV-0124369_56	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0124369_56	Structural annotation	PF12691	NA	NA
UHGV-0124369_57	PHROG	phrog_3099	NA	unknown function
UHGV-0124369_57	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0124369_57	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0124369_58	Structural annotation	PF10666	NA	NA
UHGV-0124369_59	PHROG	phrog_706	NA	unknown function
UHGV-0124369_59	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0124369_59	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0124369_59	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0124369_59	Structural annotation	PF06854	NA	NA
UHGV-0124369_60	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0124369_60	eggNOG-mapper	1504823.CCMM01000008_gene1032	phage tail tape measure protein	NA
UHGV-0124369_60	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0124369_61	PHROG	phrog_1194	NA	unknown function
UHGV-0124369_62	UniRef90	UniRef90_R5YH87	CBM-cenC domain-containing protein	NA
UHGV-0124369_62	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0124369_62	COG	COG4926	Phage-related protein	NA
UHGV-0124369_62	Structural annotation	PF05113, PF04862, NF033848, COG3500	NA	NA
UHGV-0124369_63	PHROG	phrog_1401	NA	unknown function
UHGV-0124369_63	UniRef90	UniRef90_UPI001628172B	NA	NA
UHGV-0124369_63	eggNOG-mapper	1499683.CCFF01000014_gene3897	NA	NA
UHGV-0124369_63	Structural annotation	PF07761	NA	NA
UHGV-0124369_68	PHROG	phrog_1863	NA	unknown function
UHGV-0124369_68	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0124369_69	PHROG	phrog_263	holin	lysis
UHGV-0124369_69	UniRef90	UniRef90_R6E0V9	Holin SPP1 family	NA
UHGV-0124369_69	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-0124369_69	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0124369_69	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0124369_69	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0124369_70	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0124369_70	PHROG	phrog_7698	endolysin	lysis
UHGV-0124369_70	UniRef90	UniRef90_R6DZ86	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0124369_70	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124369_70	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0124369_70	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0124369_70	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124369_70	Structural annotation	PF01510, MF_04111, NF008758, NF038080, COG5632	NA	NA