UHGV-0124410

Genome information

Genome length 40,999 bps

CDS count 60

Completeness 98.74% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124410
vOTU ID	vOTU-072594
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_331098
BioSample	SAMN00792049
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.74
Jumbo phage	No

Genome content
Genome length	40,999 bps
GC content	40.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.14%
Average CDS length	624.90 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124410_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0124410_1	PHROG	phrog_833	endolysin	lysis
UHGV-0124410_1	UniRef90	UniRef90_UPI00189DD54D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124410_1	eggNOG-mapper	411470.RUMGNA_03787	COG NOG33632 non supervised orthologous group	NA
UHGV-0124410_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0124410_1	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0124410_1	Structural annotation	PF01510, COG5632	NA	NA
UHGV-0124410_3	PHROG	phrog_14030	NA	unknown function
UHGV-0124410_3	UniRef90	UniRef90_A0A6N3GME3	Ricin-type beta-trefoil lectin domain protein	NA
UHGV-0124410_3	eggNOG-mapper	218140.BPSY_0951	NLP P60 protein	NA
UHGV-0124410_3	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0124410_3	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0124410_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0124410_4	PHROG	phrog_199	holin	lysis
UHGV-0124410_4	UniRef90	UniRef90_A0A6N3GN23	Holin family protein	NA
UHGV-0124410_4	eggNOG-mapper	476272.RUMHYD_02872	NA	NA
UHGV-0124410_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0124410_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0124410_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0124410_5	Structural annotation	PF08931	NA	NA
UHGV-0124410_6	PHROG	phrog_24103	NA	unknown function
UHGV-0124410_6	eggNOG-mapper	420247.Msm_1688	NA	NA
UHGV-0124410_8	eggNOG-mapper	762211.BSTEL_0612	NA	NA
UHGV-0124410_8	Structural annotation	PF09136	NA	NA
UHGV-0124410_9	PHROG	phrog_16164	NA	unknown function
UHGV-0124410_9	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0124410_9	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0124410_10	PHROG	phrog_21765	NA	unknown function
UHGV-0124410_10	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-0124410_10	eggNOG-mapper	97139.C824_05954	NA	NA
UHGV-0124410_11	PHROG	phrog_14030	NA	unknown function
UHGV-0124410_11	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-0124410_11	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0124410_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0124410_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0124410_11	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0124410_12	PHROG	phrog_13289	tail protein	tail
UHGV-0124410_12	UniRef90	UniRef90_A0A412C574	Prophage_tail domain-containing protein	NA
UHGV-0124410_12	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0124410_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0124410_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0124410_12	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0124410_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0124410_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0124410_13	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0124410_13	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0124410_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0124410_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0124410_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0124410_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0124410_14	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0124410_14	UniRef90	UniRef90_R5TQ69	PhageMin_Tail domain-containing protein	NA
UHGV-0124410_14	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0124410_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0124410_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0124410_14	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0124410_14	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0124410_15	PHROG	phrog_3033	NA	unknown function
UHGV-0124410_15	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0124410_15	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0124410_16	PHROG	phrog_709	NA	unknown function
UHGV-0124410_16	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0124410_16	Structural annotation	PF11836	NA	NA
UHGV-0124410_17	PHROG	phrog_88	major tail protein	tail
UHGV-0124410_17	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-0124410_17	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0124410_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0124410_18	PHROG	phrog_78	tail terminator	connector
UHGV-0124410_18	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0124410_18	Structural annotation	PF20765	NA	NA
UHGV-0124410_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124410_19	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0124410_19	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-0124410_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124410_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0124410_20	PHROG	phrog_19734	NA	unknown function
UHGV-0124410_20	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0124410_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0124410_21	PHROG	phrog_749	NA	unknown function
UHGV-0124410_21	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0124410_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0124410_22	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-0124410_22	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0124410_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0124410_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0124410_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0124410_22	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0124410_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0124410_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0124410_23	UniRef90	UniRef90_A0A6N3GKE0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0124410_23	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0124410_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0124410_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0124410_23	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0124410_24	PHROG	phrog_14030	NA	unknown function
UHGV-0124410_24	UniRef90	UniRef90_UPI0018DBE749	NlpC/P60 family protein	NA
UHGV-0124410_24	eggNOG-mapper	218140.BPSY_0951	NLP P60 protein	NA
UHGV-0124410_24	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0124410_24	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0124410_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0124410_25	UniRef90	UniRef90_R5TQ78	Phage portal protein HK97 family	NA
UHGV-0124410_25	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0124410_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0124410_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0124410_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0124410_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0124410_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0124410_26	UniRef90	UniRef90_A0A2N5NUK9	Terminase	NA
UHGV-0124410_26	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0124410_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0124410_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0124410_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0124410_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0124410_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0124410_27	UniRef90	UniRef90_UPI001A9A3020	P27 family phage terminase small subunit	NA
UHGV-0124410_27	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0124410_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0124410_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0124410_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0124410_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124410_28	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0124410_28	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0124410_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0124410_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124410_29	UniRef90	UniRef90_A0A2N5Q1T5	Chemotaxis protein	NA
UHGV-0124410_29	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0124410_30	UniRef90	UniRef90_UPI00156EF43B	chemotaxis protein	NA
UHGV-0124410_30	eggNOG-mapper	658088.HMPREF0987_01711	NA	NA
UHGV-0124410_30	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0124410_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124410_32	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0124410_32	Structural annotation	PF02996	NA	NA
UHGV-0124410_35	Structural annotation	PF02895	NA	NA
UHGV-0124410_36	PHROG	phrog_8684	NA	unknown function
UHGV-0124410_36	UniRef90	UniRef90_UPI00189FDA60	YopX family protein	NA
UHGV-0124410_36	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0124410_36	Pfam	PF09643	YopX protein	YopX
UHGV-0124410_36	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0124410_36	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0124410_39	PHROG	phrog_26861	NA	unknown function
UHGV-0124410_39	UniRef90	UniRef90_A0A1C5X384	Single-stranded DNA-binding protein	NA
UHGV-0124410_39	eggNOG-mapper	622312.ROSEINA2194_00317	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0124410_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0124410_39	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0124410_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124410_39	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0124410_40	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0124410_41	PHROG	phrog_7566	NA	unknown function
UHGV-0124410_41	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0124410_42	PHROG	phrog_15077	NA	unknown function
UHGV-0124410_42	UniRef90	UniRef90_UPI001C0F37CA	NA	NA
UHGV-0124410_42	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0124410_42	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0124410_43	PHROG	phrog_8470	NA	unknown function
UHGV-0124410_43	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0124410_43	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0124410_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0124410_43	Structural annotation	PF14284	NA	NA
UHGV-0124410_44	UniRef90	UniRef90_UPI001C0EE701	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0124410_44	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0124410_44	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0124410_45	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0124410_45	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0124410_45	UniRef90	UniRef90_R5TR44	RNase H type-1 domain-containing protein	NA
UHGV-0124410_45	eggNOG-mapper	1232453.BAIF02000027_gene4200	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0124410_45	Pfam	PF00075	RNase H	RNase_H
UHGV-0124410_45	COG	COG0328	Ribonuclease HI	NA
UHGV-0124410_45	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0124410_46	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0124410_46	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0124410_46	Structural annotation	PF01446	NA	NA
UHGV-0124410_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124410_53	UniRef90	UniRef90_R5TR53	DNA-binding helix-turn-helix protein	NA
UHGV-0124410_53	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0124410_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124410_53	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0124410_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124410_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124410_54	UniRef90	UniRef90_R5TY56	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0124410_54	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0124410_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124410_54	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0124410_54	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0124410_55	PHROG	phrog_87	metallo-protease	other
UHGV-0124410_55	UniRef90	UniRef90_A0A414UZ15	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0124410_55	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0124410_55	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0124410_55	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0124410_55	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0124410_57	PHROG	phrog_38135	NA	unknown function
UHGV-0124410_57	UniRef90	UniRef90_A0A1C5X461	Transcription initiation factor TFIID, subunit TAF12 (Also component of histone acetyltransferase SAGA)	NA
UHGV-0124410_57	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0124410_57	Pfam	PF14020	NA	DUF4236
UHGV-0124410_57	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0124410_57	Structural annotation	PF14020	NA	NA
UHGV-0124410_58	PHROG	phrog_7115	NA	unknown function
UHGV-0124410_58	UniRef90	UniRef90_A0A412C4Y3	PH domain-containing protein	NA
UHGV-0124410_58	eggNOG-mapper	476272.RUMHYD_02184	Bacterial PH domain	NA
UHGV-0124410_58	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0124410_59	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0124410_59	UniRef90	UniRef90_A0A6N3DH69	Abi-like protein	NA
UHGV-0124410_59	eggNOG-mapper	476272.RUMHYD_02820	Abi-like protein	NA
UHGV-0124410_59	PADLOC	AbiD	AbiD	Abi
UHGV-0124410_59	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0124410_59	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0124410_59	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0124410_60	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0124410_60	PHROG	phrog_95	integrase	integration and excision
UHGV-0124410_60	UniRef90	UniRef90_A7B6L4	Resolvase, N-terminal domain protein	NA
UHGV-0124410_60	eggNOG-mapper	411470.RUMGNA_03227	Resolvase, N terminal domain	NA
UHGV-0124410_60	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0124410_60	Pfam	PF07508	Recombinase	Recombinase
UHGV-0124410_60	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0124410_60	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0124410_60	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA