UHGV-0124536

Genome information

Genome length 46,535 bps

CDS count 70

Completeness 99.90% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124536
vOTU ID	vOTU-009473
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_334588
BioSample	SAMN00792031
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.1
Jumbo phage	No

Genome content
Genome length	46,535 bps
GC content	48.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	89.98%
Average CDS length	601.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124536_4	UniRef90	UniRef90_H1CEM5	SH3b domain-containing protein	NA
UHGV-0124536_4	eggNOG-mapper	1235797.C816_02842	mannosyl-glycoprotein	NA
UHGV-0124536_4	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0124536_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0124536_4	Structural annotation	PF05382, NF033743	NA	NA
UHGV-0124536_5	PHROG	phrog_13256	NA	unknown function
UHGV-0124536_5	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0124536_6	PHROG	phrog_1863	NA	unknown function
UHGV-0124536_6	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0124536_7	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0124536_7	Structural annotation	PF14600	NA	NA
UHGV-0124536_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0124536_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0124536_9	UniRef90	UniRef90_H1CEN0	Reverse transcriptase domain-containing protein	NA
UHGV-0124536_9	eggNOG-mapper	521003.COLINT_02359	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0124536_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0124536_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0124536_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0124536_9	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0124536_10	PHROG	phrog_30516	NA	unknown function
UHGV-0124536_10	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0124536_11	PHROG	phrog_37900	NA	unknown function
UHGV-0124536_11	UniRef90	UniRef90_H1CEN2	NA	NA
UHGV-0124536_11	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0124536_11	Pfam	PF19789	NA	DUF6273
UHGV-0124536_11	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0124536_11	Structural annotation	PF19789, PF14686, TIGR04183, COG2512	NA	NA
UHGV-0124536_12	PHROG	phrog_18725	NA	unknown function
UHGV-0124536_12	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0124536_13	PHROG	phrog_13879	NA	unknown function
UHGV-0124536_13	eggNOG-mapper	665956.HMPREF1032_03630	NA	NA
UHGV-0124536_13	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0124536_14	PHROG	phrog_1194	NA	unknown function
UHGV-0124536_14	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0124536_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0124536_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0124536_15	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0124536_15	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0124536_16	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0124536_17	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0124536_17	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0124536_17	Pfam	PF16478	NA	DUF5055
UHGV-0124536_17	Structural annotation	PF16478	NA	NA
UHGV-0124536_18	PHROG	phrog_158	major tail protein	tail
UHGV-0124536_18	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-0124536_18	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0124536_18	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0124536_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0124536_19	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0124536_20	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0124536_21	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0124536_22	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0124536_22	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0124536_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0124536_22	Structural annotation	TIGR01560	NA	NA
UHGV-0124536_23	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0124536_23	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0124536_23	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0124536_23	Pfam	PF17236	NA	DUF5309
UHGV-0124536_23	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0124536_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0124536_26	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0124536_26	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0124536_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124536_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0124536_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0124536_27	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0124536_27	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0124536_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0124536_27	COG	COG5410	NA	NA
UHGV-0124536_27	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0124536_28	PHROG	phrog_1233	NA	unknown function
UHGV-0124536_28	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0124536_30	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0124536_30	UniRef90	UniRef90_A0A242KY86	LysM domain-containing protein	NA
UHGV-0124536_30	eggNOG-mapper	661087.HMPREF1008_00429	NA	NA
UHGV-0124536_31	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0124536_31	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0124536_31	UniRef90	UniRef90_H1CEQ0	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0124536_31	eggNOG-mapper	1294142.CINTURNW_1680	Resolvase, N terminal domain	NA
UHGV-0124536_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0124536_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0124536_31	Structural annotation	PF00239, NF009949, COG1961	NA	NA
UHGV-0124536_32	UniRef90	UniRef90_UPI001D08C4A6	helix-turn-helix domain-containing protein	NA
UHGV-0124536_32	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-0124536_38	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0124536_38	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0124536_38	eggNOG-mapper	1235802.C823_05975	NA	NA
UHGV-0124536_38	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0124536_38	Structural annotation	PF16677	NA	NA
UHGV-0124536_40	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0124536_43	PHROG	phrog_22389	NA	unknown function
UHGV-0124536_43	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0124536_44	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0124536_44	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0124536_44	UniRef90	UniRef90_H1CER1	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-0124536_44	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0124536_44	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0124536_44	Pfam	PF19263	NA	DUF5906
UHGV-0124536_44	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0124536_44	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0124536_44	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0124536_44	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0124536_45	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0124536_45	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0124536_45	UniRef90	UniRef90_UPI001D0750B0	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0124536_45	eggNOG-mapper	553973.CLOHYLEM_03974	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0124536_45	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0124536_45	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0124536_45	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0124536_46	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0124536_46	UniRef90	UniRef90_H1CER3	PriCT_1 domain-containing protein	NA
UHGV-0124536_46	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0124536_46	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0124536_46	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0124536_46	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0124536_47	PHROG	phrog_30550	NA	unknown function
UHGV-0124536_47	UniRef90	UniRef90_R6CIF0	Hydrolase_2 domain-containing protein	NA
UHGV-0124536_47	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0124536_47	Structural annotation	TIGR02869	NA	NA
UHGV-0124536_50	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0124536_50	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0124536_50	UniRef90	UniRef90_UPI001898977C	FAD-dependent thymidylate synthase	NA
UHGV-0124536_50	eggNOG-mapper	1336241.JAEB01000001_gene147	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0124536_50	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0124536_50	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0124536_50	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0124536_50	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0124536_51	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0124536_51	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0124536_51	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-0124536_51	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0124536_51	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0124536_52	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0124536_52	UniRef90	UniRef90_UPI001899D94E	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0124536_52	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0124536_52	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0124536_52	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0124536_52	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0124536_53	PHROG	phrog_1485	NA	unknown function
UHGV-0124536_53	UniRef90	UniRef90_H1CES0	NA	NA
UHGV-0124536_53	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0124536_53	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0124536_54	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0124536_56	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124536_56	UniRef90	UniRef90_H1CES3	YqaJ domain-containing protein	NA
UHGV-0124536_56	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-0124536_56	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0124536_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0124536_56	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0124536_57	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124536_57	UniRef90	UniRef90_UPI001A9A8367	ERF family protein	NA
UHGV-0124536_57	eggNOG-mapper	936572.HMPREF1148_0677	ERF superfamily	NA
UHGV-0124536_57	Pfam	PF04404	ERF superfamily	ERF
UHGV-0124536_57	Structural annotation	PF04404	NA	NA
UHGV-0124536_59	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0124536_59	UniRef90	UniRef90_A0A6N9P2A7	Adenine methyltransferase	NA
UHGV-0124536_59	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0124536_59	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0124536_59	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0124536_59	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0124536_60	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-0124536_60	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0124536_61	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0124536_61	UniRef90	UniRef90_UPI00189DB5D1	DNA polymerase elongation subunit (family B)	NA
UHGV-0124536_61	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0124536_61	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0124536_61	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0124536_62	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0124536_62	UniRef90	UniRef90_UPI00189BA758	DNA cytosine methyltransferase	NA
UHGV-0124536_62	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0124536_62	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0124536_63	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0124536_63	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0124536_63	UniRef90	UniRef90_H1CET1	Helicase ATP-binding domain-containing protein	NA
UHGV-0124536_63	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0124536_63	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0124536_63	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0124536_63	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0124536_63	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0124536_64	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124536_64	UniRef90	UniRef90_UPI0018982E6D	Holliday junction resolvase RecU	NA
UHGV-0124536_64	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0124536_64	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0124536_66	PHROG	phrog_37900	NA	unknown function
UHGV-0124536_66	UniRef90	UniRef90_H1CET4	NA	NA
UHGV-0124536_66	eggNOG-mapper	1121866.AUGK01000004_gene188	serine threonine protein kinase	NA
UHGV-0124536_66	Pfam	PF19789	NA	DUF6273
UHGV-0124536_66	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0124536_66	Structural annotation	PF19789	NA	NA
UHGV-0124536_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124536_69	UniRef90	UniRef90_UPI001AB058F6	helix-turn-helix domain-containing protein	NA
UHGV-0124536_69	eggNOG-mapper	663278.Ethha_2377	sequence-specific DNA binding	NA
UHGV-0124536_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124536_69	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124536_69	Structural annotation	PF12844, NF007257, COG1396	NA	NA
UHGV-0124536_70	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0124536_70	PHROG	phrog_95	integrase	integration and excision
UHGV-0124536_70	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0124536_70	eggNOG-mapper	663278.Ethha_0939	NA	NA
UHGV-0124536_70	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0124536_70	Pfam	PF07508	Recombinase	Recombinase
UHGV-0124536_70	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0124536_70	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0124536_70	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA