UHGV-0124550

Genome information

Genome length 24,776 bps

CDS count 29

Completeness 54.46% (medium-quality)

geNomad score 0.9652

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124550
vOTU ID	vOTU-030384
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_321526
BioSample	SAMN00792005
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9652
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.17
Jumbo phage	No

Genome content
Genome length	24,776 bps
GC content	41.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	92.63%
Average CDS length	793.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124550_1	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0124550_1	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0124550_1	UniRef90	UniRef90_A0A416DXZ4	ATP-dependent helicase	NA
UHGV-0124550_1	eggNOG-mapper	1280671.AUJH01000012_gene3163	Bacterial SNF2 helicase associated	NA
UHGV-0124550_1	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0124550_1	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0124550_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0124550_1	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0124550_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124550_2	eggNOG-mapper	1280671.AUJH01000012_gene3162	NA	NA
UHGV-0124550_2	Structural annotation	PF04545, MF_00674, NF001068, COG1191	NA	NA
UHGV-0124550_3	UniRef90	UniRef90_UPI00035F643E	SymE family type I addiction module toxin	NA
UHGV-0124550_3	eggNOG-mapper	1286171.EAL2_c04970	Toxin SymE, type I toxin-antitoxin system	NA
UHGV-0124550_3	Pfam	PF08845	Toxin SymE, type I toxin-antitoxin system	SymE_toxin
UHGV-0124550_4	eggNOG-mapper	1499683.CCFF01000017_gene1399	NA	NA
UHGV-0124550_5	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0124550_5	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124550_5	UniRef90	UniRef90_UPI00047C6264	HNH endonuclease	NA
UHGV-0124550_5	eggNOG-mapper	1280696.ATVY01000093_gene1449	HNH endonuclease	NA
UHGV-0124550_5	AcrCatalog	cluster_19695	NA	NA
UHGV-0124550_5	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0124550_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0124550_5	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0124550_6	PHROG	phrog_2308	NA	unknown function
UHGV-0124550_6	UniRef90	UniRef90_A0A1Y4S8H5	RNA polymerase subunit sigma-70	NA
UHGV-0124550_6	eggNOG-mapper	1280671.AUJH01000012_gene3159	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0124550_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0124550_6	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0124550_7	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0124550_7	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0124550_7	UniRef90	UniRef90_UPI0004283DB1	site-specific DNA-methyltransferase	NA
UHGV-0124550_7	eggNOG-mapper	1280671.AUJH01000012_gene3158	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0124550_7	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0124550_7	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0124550_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0124550_7	COG	COG0863	DNA modification methylase	NA
UHGV-0124550_7	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0124550_8	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0124550_8	UniRef90	UniRef90_A0A7C6SS09	Virulence-related protein	NA
UHGV-0124550_8	eggNOG-mapper	1280671.AUJH01000012_gene3157	NA	NA
UHGV-0124550_8	AcrCatalog	cluster_16277	NA	NA
UHGV-0124550_8	Structural annotation	PF12224	NA	NA
UHGV-0124550_9	PHROG	phrog_3782	NA	unknown function
UHGV-0124550_9	UniRef90	UniRef90_UPI001C38D186	NA	NA
UHGV-0124550_9	eggNOG-mapper	1408324.JNJK01000006_gene1370	NA	NA
UHGV-0124550_9	Pfam	PF14192	NA	DUF4314
UHGV-0124550_9	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0124550_9	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-0124550_10	PHROG	phrog_21141	NA	unknown function
UHGV-0124550_10	eggNOG-mapper	552396.HMPREF0863_01431	NA	NA
UHGV-0124550_10	AcrCatalog	cluster_5293	NA	NA
UHGV-0124550_11	PHROG	phrog_4709	NA	unknown function
UHGV-0124550_11	eggNOG-mapper	552396.HMPREF0863_01432	NA	NA
UHGV-0124550_12	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0124550_12	UniRef90	UniRef90_UPI000423F664	phage terminase small subunit P27 family	NA
UHGV-0124550_12	eggNOG-mapper	1280671.AUJH01000012_gene3154	phage terminase, small subunit	NA
UHGV-0124550_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0124550_12	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0124550_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0124550_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0124550_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0124550_13	UniRef90	UniRef90_A0A3R6JMV3	Terminase large subunit	NA
UHGV-0124550_13	eggNOG-mapper	1408422.JHYF01000021_gene983	Terminase	NA
UHGV-0124550_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0124550_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0124550_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0124550_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0124550_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0124550_14	UniRef90	UniRef90_A0A3R6NGK4	Phage portal protein	NA
UHGV-0124550_14	eggNOG-mapper	483218.BACPEC_01307	Phage portal protein	NA
UHGV-0124550_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0124550_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0124550_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0124550_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0124550_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0124550_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0124550_15	UniRef90	UniRef90_A0A3R6S0G3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0124550_15	eggNOG-mapper	397288.C806_00761	Serine dehydrogenase proteinase	NA
UHGV-0124550_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0124550_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0124550_15	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0124550_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0124550_16	UniRef90	UniRef90_A0A416DYD2	Phage major capsid protein	NA
UHGV-0124550_16	eggNOG-mapper	411470.RUMGNA_02324	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0124550_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0124550_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0124550_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0124550_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0124550_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0124550_17	UniRef90	UniRef90_A0A416DXZ1	Phage gp6-like head-tail connector protein	NA
UHGV-0124550_17	eggNOG-mapper	483218.BACPEC_01310	Phage gp6-like head-tail connector protein	NA
UHGV-0124550_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0124550_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0124550_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0124550_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-0124550_18	UniRef90	UniRef90_A0A3R6JV54	Head-tail adaptor protein	NA
UHGV-0124550_18	eggNOG-mapper	397288.C806_00764	Phage head-tail joining protein	NA
UHGV-0124550_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0124550_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0124550_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0124550_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0124550_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0124550_19	UniRef90	UniRef90_A0A3R6KDI4	HK97 gp10 family phage protein	NA
UHGV-0124550_19	eggNOG-mapper	742740.HMPREF9474_01209	COG NOG18351 non supervised orthologous group	NA
UHGV-0124550_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0124550_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0124550_20	PHROG	phrog_78	tail terminator	connector
UHGV-0124550_20	UniRef90	UniRef90_UPI0005C7AE81	NA	NA
UHGV-0124550_20	eggNOG-mapper	397288.C806_00766	NA	NA
UHGV-0124550_20	Structural annotation	PF20765	NA	NA
UHGV-0124550_21	PHROG	phrog_88	major tail protein	tail
UHGV-0124550_21	UniRef90	UniRef90_A0A3E2XPP5	Phage tail protein	NA
UHGV-0124550_21	eggNOG-mapper	483218.BACPEC_01314	phage major tail protein, phi13 family	NA
UHGV-0124550_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0124550_21	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0124550_22	PHROG	phrog_709	NA	unknown function
UHGV-0124550_22	eggNOG-mapper	397288.C806_00768	NA	NA
UHGV-0124550_22	Structural annotation	PF11836	NA	NA
UHGV-0124550_23	PHROG	phrog_3033	NA	unknown function
UHGV-0124550_23	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0124550_23	eggNOG-mapper	411489.CLOL250_01719	NA	NA
UHGV-0124550_24	PHROG	phrog_37652	NA	unknown function
UHGV-0124550_24	UniRef90	UniRef90_A0A174EPY1	HNH endonuclease	NA
UHGV-0124550_24	eggNOG-mapper	1517681.HW45_28450	Tetratricopeptide repeat	NA
UHGV-0124550_24	PADLOC	Effector_00084	Endonuclease	CBASS
UHGV-0124550_24	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0124550_25	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0124550_25	UniRef90	UniRef90_UPI00191CDF68	phage tail tape measure protein	NA
UHGV-0124550_25	eggNOG-mapper	411470.RUMGNA_03897	Phage tail tape measure protein, TP901 family	NA
UHGV-0124550_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0124550_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0124550_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0124550_25	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0124550_26	PHROG	phrog_1194	NA	unknown function
UHGV-0124550_26	eggNOG-mapper	483218.BACPEC_01319	NA	NA
UHGV-0124550_26	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0124550_27	PHROG	phrog_23052	NA	unknown function
UHGV-0124550_27	eggNOG-mapper	946235.CAER01000065_gene2433	NA	NA
UHGV-0124550_27	Structural annotation	PF14879, PF09931, NF033848, TIGR03721, COG3500, COG4935	NA	NA
UHGV-0124550_28	eggNOG-mapper	483218.BACPEC_01321	NA	NA
UHGV-0124550_29	PHROG	phrog_19291	NA	unknown function
UHGV-0124550_29	eggNOG-mapper	1232449.BAHV02000021_gene1072	NA	NA
UHGV-0124550_29	Structural annotation	PF02191, COG3823	NA	NA