UHGV-0124568

Genome information

Genome length 59,328 bps

CDS count 102

Completeness 99.90% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124568
vOTU ID	vOTU-067902
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_328849
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.82
Jumbo phage	No

Genome content
Genome length	59,328 bps
GC content	40.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	102
CDS density	84.74%
Average CDS length	495.94 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124568_1	PHROG	phrog_25456	NA	unknown function
UHGV-0124568_3	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0124568_3	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0124568_3	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0124568_3	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0124568_3	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0124568_3	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0124568_3	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0124568_4	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0124568_4	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0124568_5	PHROG	phrog_1029	NA	unknown function
UHGV-0124568_5	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0124568_5	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0124568_5	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0124568_7	PHROG	phrog_19106	NA	unknown function
UHGV-0124568_7	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0124568_7	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0124568_7	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0124568_7	Structural annotation	TIGR01453	NA	NA
UHGV-0124568_8	PHROG	phrog_11769	NA	unknown function
UHGV-0124568_8	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0124568_8	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0124568_8	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0124568_8	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0124568_8	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0124568_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0124568_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0124568_9	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0124568_9	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0124568_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0124568_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0124568_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0124568_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0124568_13	PHROG	phrog_22292	NA	unknown function
UHGV-0124568_14	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0124568_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124568_15	PHROG	phrog_8684	NA	unknown function
UHGV-0124568_15	UniRef90	UniRef90_A0A1Q6ETU5	YopX domain-containing protein	NA
UHGV-0124568_15	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0124568_15	Pfam	PF09643	YopX protein	YopX
UHGV-0124568_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0124568_16	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0124568_17	PHROG	phrog_20593	NA	unknown function
UHGV-0124568_19	PHROG	phrog_874	NA	unknown function
UHGV-0124568_19	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0124568_19	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0124568_20	Structural annotation	PF11184	NA	NA
UHGV-0124568_22	PHROG	phrog_6724	NA	unknown function
UHGV-0124568_22	eggNOG-mapper	1463936.JOJI01000043_gene7935	NA	NA
UHGV-0124568_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0124568_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0124568_25	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0124568_25	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0124568_25	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0124568_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0124568_25	COG	COG0863	DNA modification methylase	NA
UHGV-0124568_25	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0124568_26	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0124568_26	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0124568_26	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0124568_27	KOfam	K14059	int; integrase	NA
UHGV-0124568_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0124568_27	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0124568_27	eggNOG-mapper	97139.C824_00125	Phage integrase family	NA
UHGV-0124568_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124568_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0124568_27	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0124568_29	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0124568_30	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0124568_31	PHROG	phrog_16490	NA	unknown function
UHGV-0124568_31	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0124568_32	PHROG	phrog_20016	NA	unknown function
UHGV-0124568_32	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0124568_32	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0124568_32	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0124568_33	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0124568_34	PHROG	phrog_1233	NA	unknown function
UHGV-0124568_34	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0124568_34	Structural annotation	PF13058	NA	NA
UHGV-0124568_37	Structural annotation	PF10694, MF_00403_B, NF007348, COG5569	NA	NA
UHGV-0124568_42	UniRef90	UniRef90_UPI001D008199	helix-turn-helix domain-containing protein	NA
UHGV-0124568_42	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0124568_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0124568_43	UniRef90	UniRef90_A0A2N5NVL9	Transcriptional regulator	NA
UHGV-0124568_43	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124568_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124568_44	Structural annotation	PF12993	NA	NA
UHGV-0124568_46	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0124568_47	Structural annotation	PF10750, MF_00508, TIGR00166	NA	NA
UHGV-0124568_48	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0124568_48	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0124568_48	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0124568_48	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0124568_48	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0124568_48	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0124568_49	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0124568_51	UniRef90	UniRef90_UPI001D011ACB	zinc ribbon domain-containing protein	NA
UHGV-0124568_51	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0124568_55	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0124568_55	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0124568_55	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0124568_56	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0124568_56	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0124568_56	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0124568_56	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0124568_56	COG	COG5410	NA	NA
UHGV-0124568_56	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0124568_57	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124568_57	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0124568_57	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0124568_57	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0124568_57	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0124568_58	PHROG	phrog_64	portal protein	head and packaging
UHGV-0124568_58	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0124568_58	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0124568_58	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124568_58	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0124568_59	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0124568_60	PHROG	phrog_909	major head protein	head and packaging
UHGV-0124568_60	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0124568_60	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0124568_61	PHROG	phrog_29	major head protein	head and packaging
UHGV-0124568_61	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0124568_61	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0124568_61	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0124568_61	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0124568_62	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0124568_62	Structural annotation	PF21169	NA	NA
UHGV-0124568_63	PHROG	phrog_774	NA	unknown function
UHGV-0124568_63	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0124568_64	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0124568_65	PHROG	phrog_4105	NA	unknown function
UHGV-0124568_65	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0124568_66	PHROG	phrog_443	holin	lysis
UHGV-0124568_66	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0124568_66	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0124568_66	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0124568_66	Structural annotation	PF16945	NA	NA
UHGV-0124568_67	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0124568_68	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0124568_68	AcrCatalog	cluster_24841	NA	NA
UHGV-0124568_69	Structural annotation	PF05657	NA	NA
UHGV-0124568_70	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0124568_70	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0124568_73	PHROG	phrog_14030	NA	unknown function
UHGV-0124568_73	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0124568_73	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0124568_73	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0124568_74	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0124568_74	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-0124568_74	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0124568_74	COG	COG1511	NA	NA
UHGV-0124568_75	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124568_75	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-0124568_75	eggNOG-mapper	745718.JADT01000019_gene1515	Intron encoded nuclease repeat motif	NA
UHGV-0124568_75	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0124568_75	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0124568_75	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0124568_75	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0124568_76	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0124568_76	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0124568_76	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0124568_76	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0124568_77	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0124568_77	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0124568_77	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0124568_78	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0124568_78	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0124568_78	UniRef90	UniRef90_F7JKG1	Bro-N domain-containing protein	NA
UHGV-0124568_78	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0124568_78	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0124568_78	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0124568_78	COG	COG3617	Prophage antirepressor	NA
UHGV-0124568_78	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0124568_79	PHROG	phrog_1194	NA	unknown function
UHGV-0124568_79	Pfam	PF20458	NA	DUF6711
UHGV-0124568_79	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0124568_80	PHROG	phrog_18190	NA	unknown function
UHGV-0124568_80	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0124568_80	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0124568_80	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0124568_80	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0124568_81	PHROG	phrog_17196	kinase	other
UHGV-0124568_81	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0124568_81	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0124568_83	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0124568_84	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0124568_84	Structural annotation	NF040910	NA	NA
UHGV-0124568_85	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0124568_85	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0124568_85	UniRef90	UniRef90_A0A173RCH7	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0124568_85	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0124568_85	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124568_85	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124568_85	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0124568_86	PHROG	phrog_32192	NA	unknown function
UHGV-0124568_86	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-0124568_91	PHROG	phrog_26861	NA	unknown function
UHGV-0124568_91	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0124568_91	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0124568_91	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0124568_91	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124568_91	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0124568_93	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0124568_93	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124568_93	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0124568_93	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0124568_93	Pfam	PF13476	AAA domain	AAA_23
UHGV-0124568_93	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0124568_93	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0124568_96	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0124568_97	PHROG	phrog_2164	NA	unknown function
UHGV-0124568_97	eggNOG-mapper	1174684.EBMC1_14695	NA	NA
UHGV-0124568_100	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124568_100	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0124568_100	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0124568_100	Structural annotation	NF007351, COG3723	NA	NA