UHGV-0124599

Genome information

Genome length 27,828 bps

CDS count 60

Completeness 73.93% (medium-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124599
vOTU ID	vOTU-033580
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_330538
BioSample	SAMN00791962
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.95
Jumbo phage	No

Genome content
Genome length	27,828 bps
GC content	28.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	85.79%
Average CDS length	400.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124599_1	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0124599_3	Structural annotation	PF12363	NA	NA
UHGV-0124599_5	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0124599_5	Structural annotation	PF05657	NA	NA
UHGV-0124599_6	eggNOG-mapper	445972.ANACOL_01849	NA	NA
UHGV-0124599_6	Structural annotation	TIGR01725	NA	NA
UHGV-0124599_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0124599_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0124599_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0124599_10	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0124599_10	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0124599_11	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0124599_11	UniRef90	UniRef90_R6HDW5	Phage scaffold protein	NA
UHGV-0124599_11	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0124599_11	Pfam	PF14265	NA	DUF4355
UHGV-0124599_11	Structural annotation	PF14265	NA	NA
UHGV-0124599_13	PHROG	phrog_1454	NA	unknown function
UHGV-0124599_15	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0124599_15	UniRef90	UniRef90_A0A372SR94	Phage head morphogenesis protein	NA
UHGV-0124599_15	eggNOG-mapper	1151292.QEW_3259	Phage Mu protein F like protein	NA
UHGV-0124599_15	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0124599_15	COG	COG2369	NA	NA
UHGV-0124599_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0124599_16	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0124599_16	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0124599_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124599_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0124599_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124599_17	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0124599_17	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-0124599_17	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0124599_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0124599_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124599_17	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0124599_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124599_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0124599_18	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-0124599_18	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0124599_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0124599_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124599_18	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-0124599_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0124599_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0124599_19	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0124599_19	eggNOG-mapper	246194.CHY_1681	terminase, small subunit	NA
UHGV-0124599_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0124599_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0124599_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0124599_21	PHROG	phrog_1233	NA	unknown function
UHGV-0124599_21	Structural annotation	PF13058	NA	NA
UHGV-0124599_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124599_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0124599_23	Structural annotation	PF04545, MF_00962, TIGR02984, COG1191	NA	NA
UHGV-0124599_27	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0124599_27	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0124599_27	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-0124599_27	eggNOG-mapper	1294142.CINTURNW_1879	tRNA-splicing ligase RtcB	NA
UHGV-0124599_27	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0124599_27	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0124599_27	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0124599_29	eggNOG-mapper	927658.AJUM01000016_gene3158	N-6 DNA Methylase	NA
UHGV-0124599_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0124599_30	Structural annotation	PF09871, TIGR00739, COG4014	NA	NA
UHGV-0124599_31	PHROG	phrog_4601	NA	unknown function
UHGV-0124599_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0124599_33	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124599_33	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0124599_33	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0124599_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0124599_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0124599_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0124599_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0124599_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0124599_34	UniRef90	UniRef90_A0A1Q6TZF2	Methyltransferase	NA
UHGV-0124599_34	eggNOG-mapper	469596.HMPREF9488_00879	DNA methylase	NA
UHGV-0124599_34	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0124599_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0124599_34	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0124599_34	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0124599_36	UniRef90	UniRef90_UPI0018A090A4	demethylase	NA
UHGV-0124599_37	PHROG	phrog_1123	NA	unknown function
UHGV-0124599_37	UniRef90	UniRef90_A0A7U3NJT7	Putative transcriptional regulator	NA
UHGV-0124599_37	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0124599_37	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0124599_39	PHROG	phrog_9804	NA	unknown function
UHGV-0124599_39	UniRef90	UniRef90_A0A1I2QMA2	Loader and inhibitor of phage G40P	NA
UHGV-0124599_39	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0124599_39	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0124599_39	Structural annotation	PF11417	NA	NA
UHGV-0124599_40	PHROG	phrog_16304	NA	unknown function
UHGV-0124599_40	UniRef90	UniRef90_UPI001D0811D8	NA	NA
UHGV-0124599_40	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0124599_40	Pfam	PF19808	NA	DUF6291
UHGV-0124599_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0124599_40	Structural annotation	PF19808	NA	NA
UHGV-0124599_41	PHROG	phrog_7566	NA	unknown function
UHGV-0124599_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0124599_42	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0124599_42	Pfam	PF05772	NinB protein	NinB
UHGV-0124599_42	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0124599_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0124599_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0124599_43	UniRef90	UniRef90_R6B7C1	Single-stranded DNA-binding protein	NA
UHGV-0124599_43	eggNOG-mapper	509191.AEDB02000052_gene1361	Single-stranded DNA-binding protein	NA
UHGV-0124599_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0124599_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0124599_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124599_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0124599_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0124599_44	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124599_44	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-0124599_44	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0124599_44	Pfam	PF04404	ERF superfamily	ERF
UHGV-0124599_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0124599_44	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0124599_45	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0124599_45	UniRef90	UniRef90_UPI00051BDF29	siphovirus Gp157 family protein	NA
UHGV-0124599_45	eggNOG-mapper	97138.C820_00779	Siphovirus Gp157	NA
UHGV-0124599_45	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0124599_45	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0124599_47	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0124599_47	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0124599_47	UniRef90	UniRef90_R6Y144	Transcriptional regulator AbrB family	NA
UHGV-0124599_47	eggNOG-mapper	574376.BAMA_10335	SpoVT / AbrB like domain	NA
UHGV-0124599_47	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0124599_47	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0124599_47	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0124599_54	Structural annotation	PF09114, MF_00732, TIGR04176, COG1846	NA	NA
UHGV-0124599_57	UniRef90	UniRef90_A0A3D1PJT4	HTH cro/C1-type domain-containing protein	NA
UHGV-0124599_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124599_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124599_57	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0124599_58	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124599_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124599_58	UniRef90	UniRef90_A0A3D1PLJ6	HTH cro/C1-type domain-containing protein	NA
UHGV-0124599_58	eggNOG-mapper	643648.Slip_1836	sequence-specific DNA binding	NA
UHGV-0124599_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124599_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124599_58	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0124599_59	Structural annotation	PF06114	NA	NA
UHGV-0124599_60	KOfam	K14059	int; integrase	NA
UHGV-0124599_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0124599_60	UniRef90	UniRef90_R6HDS7	Phage integrase	NA
UHGV-0124599_60	eggNOG-mapper	273068.TTE2127	Phage integrase family	NA
UHGV-0124599_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0124599_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124599_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0124599_60	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA