UHGV-0124697

Genome information

Genome length 23,034 bps

CDS count 41

Completeness 57.27% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124697
vOTU ID	vOTU-040320
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_328813
BioSample	SAMN00791911
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.19
Jumbo phage	No

Genome content
Genome length	23,034 bps
GC content	47.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.71%
Average CDS length	513.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124697_1	PHROG	phrog_3266	tail completion	connector
UHGV-0124697_1	Structural annotation	PF12691	NA	NA
UHGV-0124697_2	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0124697_2	UniRef90	UniRef90_UPI00156EFCF3	minor capsid protein	NA
UHGV-0124697_2	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0124697_2	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0124697_2	Structural annotation	PF11114	NA	NA
UHGV-0124697_3	PHROG	phrog_3366	NA	unknown function
UHGV-0124697_3	Pfam	PF20536	NA	DUF6751
UHGV-0124697_3	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0124697_4	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0124697_4	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0124697_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0124697_5	UniRef90	UniRef90_A0A3R6L2J3	Phage major capsid protein	NA
UHGV-0124697_5	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0124697_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0124697_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0124697_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0124697_5	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0124697_6	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0124697_6	UniRef90	UniRef90_UPI001D080C73	phage scaffolding protein	NA
UHGV-0124697_6	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0124697_6	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0124697_6	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0124697_7	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0124697_8	PHROG	phrog_27009	NA	unknown function
UHGV-0124697_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0124697_9	UniRef90	UniRef90_A0A3R6Q5I6	Minor capsid protein	NA
UHGV-0124697_9	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0124697_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0124697_9	COG	COG2369	NA	NA
UHGV-0124697_9	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0124697_10	PHROG	phrog_533	portal protein	head and packaging
UHGV-0124697_10	UniRef90	UniRef90_A0A416L6V7	Phage portal protein	NA
UHGV-0124697_10	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0124697_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0124697_10	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0124697_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124697_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0124697_11	UniRef90	UniRef90_A0A416G636	PBSX family phage terminase large subunit	NA
UHGV-0124697_11	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0124697_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124697_11	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0124697_12	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0124697_12	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0124697_12	UniRef90	UniRef90_A0A416L6A9	Phage portal protein	NA
UHGV-0124697_12	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0124697_12	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0124697_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0124697_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0124697_12	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0124697_13	eggNOG-mapper	1415775.U729_2223	NA	NA
UHGV-0124697_13	Structural annotation	PF00227, MF_02113_B, TIGR03690, COG0638	NA	NA
UHGV-0124697_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0124697_14	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0124697_14	eggNOG-mapper	411902.CLOBOL_00148	NA	NA
UHGV-0124697_14	Structural annotation	PF02996	NA	NA
UHGV-0124697_15	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0124697_15	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0124697_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0124697_15	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0124697_16	PHROG	phrog_29443	NA	unknown function
UHGV-0124697_16	UniRef90	UniRef90_UPI00044D3944	DNA cytosine methyltransferase	NA
UHGV-0124697_16	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0124697_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0124697_20	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0124697_21	Structural annotation	PF02295, PF18697, MF_01177, NF033788, COG0640	NA	NA
UHGV-0124697_22	PHROG	phrog_15768	NA	unknown function
UHGV-0124697_22	UniRef90	UniRef90_A0A316T437	NA	NA
UHGV-0124697_22	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0124697_22	AcrCatalog	cluster_38323	NA	NA
UHGV-0124697_22	Pfam	PF19808	NA	DUF6291
UHGV-0124697_22	Structural annotation	PF19808	NA	NA
UHGV-0124697_23	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124697_23	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0124697_23	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0124697_24	PHROG	phrog_2113	NA	unknown function
UHGV-0124697_24	Structural annotation	PF01978, TIGR01610, COG3388	NA	NA
UHGV-0124697_25	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0124697_25	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0124697_25	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0124697_26	PHROG	phrog_14970	NA	unknown function
UHGV-0124697_26	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0124697_26	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0124697_26	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0124697_28	UniRef90	UniRef90_UPI001BC23C38	Nitrogenase molybdenum-iron protein subunit beta	NA
UHGV-0124697_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0124697_37	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0124697_37	UniRef90	UniRef90_A0A3R6Y6W2	Phage antirepressor Ant	NA
UHGV-0124697_37	eggNOG-mapper	431943.CKL_2660	Phage antirepressor protein	NA
UHGV-0124697_37	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0124697_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0124697_37	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0124697_37	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0124697_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0124697_38	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0124697_38	UniRef90	UniRef90_UPI0009D68101	ORF6C domain-containing protein	NA
UHGV-0124697_38	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0124697_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0124697_38	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0124697_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0124697_38	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0124697_39	UniRef90	UniRef90_A0A1C5ZMM8	HTH_8 domain-containing protein	NA
UHGV-0124697_39	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0124697_39	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0124697_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124697_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124697_40	UniRef90	UniRef90_A0A417J9T7	Helix-turn-helix domain-containing protein	NA
UHGV-0124697_40	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124697_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124697_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124697_40	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0124697_41	PHROG	phrog_87	metallo-protease	other
UHGV-0124697_41	UniRef90	UniRef90_A0A5M8BNU6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0124697_41	eggNOG-mapper	610130.Closa_0841	IrrE N-terminal-like domain	NA
UHGV-0124697_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0124697_41	Structural annotation	PF06114, COG2856	NA	NA