UHGV-0124733

Genome information

Genome length 41,816 bps

CDS count 74

Completeness 95.97% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124733
vOTU ID	vOTU-067789
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_327589
BioSample	SAMN00993241
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.93
Jumbo phage	No

Genome content
Genome length	41,816 bps
GC content	40.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	91.06%
Average CDS length	518.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124733_1	UniRef90	UniRef90_A0A7X8VAU8	Phage tail assembly protein	NA
UHGV-0124733_1	eggNOG-mapper	411902.CLOBOL_06816	NA	NA
UHGV-0124733_2	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0124733_2	PHROG	phrog_2649	endolysin	lysis
UHGV-0124733_2	UniRef90	UniRef90_R0BKC0	Peptidase_M15_4 domain-containing protein	NA
UHGV-0124733_2	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0124733_2	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0124733_2	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0124733_2	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0124733_3	UniRef90	UniRef90_A0A352P5F4	XkdX family protein	NA
UHGV-0124733_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0124733_4	PHROG	phrog_12931	NA	unknown function
UHGV-0124733_4	eggNOG-mapper	1298920.KI911353_gene2672	NA	NA
UHGV-0124733_6	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0124733_6	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0124733_6	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0124733_7	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0124733_8	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0124733_9	PHROG	phrog_18725	NA	unknown function
UHGV-0124733_9	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0124733_10	PHROG	phrog_32744	NA	unknown function
UHGV-0124733_10	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0124733_10	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0124733_11	PHROG	phrog_1194	NA	unknown function
UHGV-0124733_11	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0124733_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0124733_12	PHROG	phrog_37543	NA	unknown function
UHGV-0124733_12	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0124733_12	eggNOG-mapper	1432847.V5USK5_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0124733_13	PHROG	phrog_706	NA	unknown function
UHGV-0124733_13	UniRef90	UniRef90_UPI00156F1927	Gp15 family bacteriophage protein	NA
UHGV-0124733_13	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0124733_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0124733_13	Structural annotation	PF06854	NA	NA
UHGV-0124733_14	PHROG	phrog_11299	NA	unknown function
UHGV-0124733_14	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0124733_14	Structural annotation	PF10666	NA	NA
UHGV-0124733_15	PHROG	phrog_3099	NA	unknown function
UHGV-0124733_15	eggNOG-mapper	1120746.CCNL01000014_gene2102	NA	NA
UHGV-0124733_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0124733_16	PHROG	phrog_3266	tail completion	connector
UHGV-0124733_16	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0124733_16	Structural annotation	PF12691	NA	NA
UHGV-0124733_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0124733_17	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0124733_17	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0124733_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0124733_17	Structural annotation	PF11114	NA	NA
UHGV-0124733_18	PHROG	phrog_3366	NA	unknown function
UHGV-0124733_18	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0124733_18	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0124733_20	PHROG	phrog_8680	NA	unknown function
UHGV-0124733_20	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0124733_20	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0124733_20	Pfam	PF14386	NA	DUF4417
UHGV-0124733_20	Structural annotation	PF14386	NA	NA
UHGV-0124733_21	PHROG	phrog_1129	holin	lysis
UHGV-0124733_21	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0124733_21	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0124733_21	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0124733_21	Structural annotation	PF06946	NA	NA
UHGV-0124733_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0124733_22	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0124733_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0124733_23	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0124733_23	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0124733_23	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0124733_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0124733_24	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0124733_24	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0124733_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0124733_26	UniRef90	UniRef90_N9YMZ1	HTH cro/C1-type domain-containing protein	NA
UHGV-0124733_26	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124733_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124733_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124733_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0124733_27	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124733_27	UniRef90	UniRef90_A0A0U5PL36	AP2 domain protein	NA
UHGV-0124733_27	eggNOG-mapper	1304866.K413DRAFT_4685	NA	NA
UHGV-0124733_27	Structural annotation	PF00847	NA	NA
UHGV-0124733_28	PHROG	phrog_28802	NA	unknown function
UHGV-0124733_28	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0124733_29	PHROG	phrog_20016	NA	unknown function
UHGV-0124733_29	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0124733_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0124733_31	PHROG	phrog_16490	NA	unknown function
UHGV-0124733_31	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0124733_32	PHROG	phrog_22984	NA	unknown function
UHGV-0124733_33	PHROG	phrog_21718	NA	unknown function
UHGV-0124733_33	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0124733_34	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0124733_34	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0124733_34	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0124733_35	UniRef90	UniRef90_A0A3E2U4I9	CTP synthase	NA
UHGV-0124733_35	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0124733_36	PHROG	phrog_3754	NA	unknown function
UHGV-0124733_36	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0124733_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0124733_38	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0124733_38	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0124733_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0124733_38	COG	COG2369	NA	NA
UHGV-0124733_38	Structural annotation	PF06152	NA	NA
UHGV-0124733_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0124733_39	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0124733_39	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0124733_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0124733_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124733_41	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0124733_41	UniRef90	UniRef90_R0BLA8	PBSX family phage terminase, large subunit	NA
UHGV-0124733_41	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0124733_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0124733_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124733_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124733_41	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0124733_42	UniRef90	UniRef90_A0A414AGA1	Helix-turn-helix domain-containing protein	NA
UHGV-0124733_42	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0124733_42	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0124733_42	Structural annotation	PF13542	NA	NA
UHGV-0124733_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124733_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124733_43	UniRef90	UniRef90_UPI0013F5F138	helix-turn-helix domain-containing protein	NA
UHGV-0124733_43	eggNOG-mapper	1232453.BAIF02000002_gene1306	helix-turn-helix	NA
UHGV-0124733_43	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0124733_43	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0124733_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124733_43	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0124733_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124733_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0124733_44	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0124733_44	AcrCatalog	cluster_11670	NA	NA
UHGV-0124733_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0124733_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0124733_45	UniRef90	UniRef90_UPI001D14C144	tyrosine-type recombinase/integrase	NA
UHGV-0124733_45	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0124733_45	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0124733_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124733_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0124733_45	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0124733_47	eggNOG-mapper	318464.IO99_13810	sulfate reduction	NA
UHGV-0124733_47	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0124733_47	Structural annotation	PF01507, MF_01161, NF006327, COG0175	NA	NA
UHGV-0124733_51	PHROG	phrog_3502	NA	unknown function
UHGV-0124733_51	UniRef90	UniRef90_A0A3E2U401	LexA_DNA_bind domain-containing protein	NA
UHGV-0124733_51	eggNOG-mapper	911104.AEKT01000020_gene1791	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0124733_51	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0124733_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0124733_51	Structural annotation	PF01726, MF_00732, TIGR00738, COG1959	NA	NA
UHGV-0124733_52	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0124733_52	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0124733_52	UniRef90	UniRef90_N9XN33	IstB_IS21 domain-containing protein	NA
UHGV-0124733_52	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0124733_52	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0124733_52	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0124733_52	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0124733_53	PHROG	phrog_16304	NA	unknown function
UHGV-0124733_53	UniRef90	UniRef90_A0A8B2X4T7	NA	NA
UHGV-0124733_53	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0124733_53	Pfam	PF19808	NA	DUF6291
UHGV-0124733_53	Structural annotation	PF19808	NA	NA
UHGV-0124733_54	PHROG	phrog_2113	NA	unknown function
UHGV-0124733_54	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-0124733_55	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-0124733_55	Structural annotation	PF17457	NA	NA
UHGV-0124733_56	PHROG	phrog_398	NA	unknown function
UHGV-0124733_56	UniRef90	UniRef90_UPI0011780B2F	putative HNHc nuclease	NA
UHGV-0124733_56	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0124733_56	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0124733_56	Structural annotation	PF16784	NA	NA
UHGV-0124733_57	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0124733_57	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0124733_57	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0124733_57	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0124733_64	UniRef90	UniRef90_R0D5J8	HTH cro/C1-type domain-containing protein	NA
UHGV-0124733_64	eggNOG-mapper	397288.C806_02998	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124733_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0124733_64	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0124733_65	UniRef90	UniRef90_A0A2Z4QA14	Immunity protein 58	NA
UHGV-0124733_65	AcrCatalog	cluster_17974	NA	NA
UHGV-0124733_67	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0124733_67	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0124733_67	UniRef90	UniRef90_UPI000E507582	phage antirepressor KilAC domain-containing protein	NA
UHGV-0124733_67	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0124733_67	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0124733_67	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0124733_67	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0124733_67	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0124733_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124733_68	UniRef90	UniRef90_UPI001D13C8FC	helix-turn-helix domain-containing protein	NA
UHGV-0124733_68	eggNOG-mapper	1536772.R70723_06540	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0124733_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124733_68	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0124733_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124733_69	UniRef90	UniRef90_UPI001D14CA4C	helix-turn-helix domain-containing protein	NA
UHGV-0124733_69	eggNOG-mapper	1304866.K413DRAFT_1181	addiction module antidote protein HigA	NA
UHGV-0124733_69	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0124733_69	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0124733_69	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0124733_70	PHROG	phrog_87	metallo-protease	other
UHGV-0124733_70	UniRef90	UniRef90_A0A414AEB8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0124733_70	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0124733_70	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0124733_70	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0124733_70	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0124733_72	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0124733_72	UniRef90	UniRef90_UPI0013F64234	NA	NA
UHGV-0124733_72	eggNOG-mapper	742740.HMPREF9474_04329	NA	NA
UHGV-0124733_72	Pfam	PF12978	NA	DUF3862
UHGV-0124733_72	Structural annotation	PF12978, PF20794, MF_00925, NF008423, COG4687, COG2913	NA	NA
UHGV-0124733_73	KOfam	K14059	int; integrase	NA
UHGV-0124733_73	PHROG	phrog_1	integrase	integration and excision
UHGV-0124733_73	UniRef90	UniRef90_UPI001D155F20	tyrosine-type recombinase/integrase	NA
UHGV-0124733_73	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0124733_73	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0124733_73	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124733_73	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0124733_73	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA