UHGV-0124782

Genome information

Genome length 42,876 bps

CDS count 61

Completeness 67.12% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0124782
vOTU ID	vOTU-068421
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323316
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	67.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.72
Jumbo phage	No

Genome content
Genome length	42,876 bps
GC content	41.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.41%
Average CDS length	651.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0124782_1	KOfam	K09692	tagG; teichoic acid transport system permease protein	NA
UHGV-0124782_1	UniRef90	UniRef90_A0A374DLZ3	ABC2_membrane domain-containing protein	NA
UHGV-0124782_1	eggNOG-mapper	1160721.RBI_I00538	ABC-2 type transporter	NA
UHGV-0124782_1	COG	COG1682	ABC-type polysaccharide/teichoic acid/polyol phosphate export permease	NA
UHGV-0124782_2	KOfam	K09691	wzt, rbfB; lipopolysaccharide transport system ATP-binding protein	NA
UHGV-0124782_2	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0124782_2	UniRef90	UniRef90_A0A2N0UQV4	Teichoic acids export ATP-binding protein TagH	NA
UHGV-0124782_2	eggNOG-mapper	1160721.RBI_I00539	NA	NA
UHGV-0124782_2	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0124782_2	COG	COG1134	ABC-type polysaccharide/polyol phosphate transport system, ATPase component	NA
UHGV-0124782_3	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-0124782_3	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0124782_3	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-0124782_3	eggNOG-mapper	877411.JMMA01000002_gene2599	epimerase dehydratase	NA
UHGV-0124782_3	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0124782_3	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-0124782_3	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA
UHGV-0124782_4	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-0124782_4	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-0124782_4	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-0124782_4	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0124782_4	Pfam	PF04991	LicD family	LicD
UHGV-0124782_4	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-0124782_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0124782_5	PHROG	phrog_20388	endolysin	lysis
UHGV-0124782_5	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124782_5	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124782_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0124782_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0124782_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0124782_5	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0124782_6	PHROG	phrog_774	NA	unknown function
UHGV-0124782_6	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0124782_7	PHROG	phrog_881	holin	lysis
UHGV-0124782_7	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0124782_7	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0124782_7	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0124782_7	Structural annotation	PF16938	NA	NA
UHGV-0124782_8	UniRef90	UniRef90_A0A374MYZ3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0124782_8	eggNOG-mapper	1007096.BAGW01000032_gene1580	NA	NA
UHGV-0124782_10	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0124782_10	Structural annotation	PF01664	NA	NA
UHGV-0124782_11	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0124782_12	PHROG	phrog_1194	NA	unknown function
UHGV-0124782_12	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0124782_12	Pfam	PF20458	NA	DUF6711
UHGV-0124782_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0124782_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0124782_13	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0124782_13	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0124782_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0124782_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0124782_14	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0124782_14	UniRef90	UniRef90_UPI00189A9092	ORF6N domain-containing protein	NA
UHGV-0124782_14	eggNOG-mapper	929506.CbC4_1188	ORF6N domain	NA
UHGV-0124782_14	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0124782_14	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0124782_16	UniRef90	UniRef90_UPI0013798457	ribbon-helix-helix protein, CopG family	NA
UHGV-0124782_16	eggNOG-mapper	1235793.C809_02220	NA	NA
UHGV-0124782_16	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0124782_18	PHROG	phrog_706	NA	unknown function
UHGV-0124782_18	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0124782_18	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0124782_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0124782_18	Structural annotation	PF06854	NA	NA
UHGV-0124782_19	PHROG	phrog_11299	NA	unknown function
UHGV-0124782_19	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0124782_19	Structural annotation	PF10666	NA	NA
UHGV-0124782_20	PHROG	phrog_3099	NA	unknown function
UHGV-0124782_20	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0124782_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0124782_21	PHROG	phrog_3266	tail completion	connector
UHGV-0124782_21	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0124782_21	Structural annotation	PF20765	NA	NA
UHGV-0124782_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0124782_22	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0124782_22	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0124782_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0124782_22	Structural annotation	PF11114	NA	NA
UHGV-0124782_23	PHROG	phrog_3366	NA	unknown function
UHGV-0124782_23	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0124782_23	Pfam	PF20536	NA	DUF6751
UHGV-0124782_23	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0124782_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0124782_24	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0124782_24	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0124782_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-0124782_25	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0124782_25	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0124782_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0124782_26	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0124782_26	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0124782_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0124782_26	Structural annotation	PF06810	NA	NA
UHGV-0124782_27	PHROG	phrog_2616	NA	unknown function
UHGV-0124782_27	Structural annotation	PF01281	NA	NA
UHGV-0124782_28	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0124782_28	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0124782_28	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0124782_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0124782_30	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0124782_30	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0124782_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0124782_30	COG	COG2369	NA	NA
UHGV-0124782_30	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0124782_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0124782_31	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0124782_31	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0124782_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0124782_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0124782_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0124782_32	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-0124782_32	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0124782_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0124782_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0124782_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0124782_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0124782_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0124782_33	Structural annotation	TIGR01636	NA	NA
UHGV-0124782_36	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0124782_36	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0124782_36	UniRef90	UniRef90_A0A2N0ULU7	SF3 helicase domain-containing protein	NA
UHGV-0124782_36	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0124782_36	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0124782_36	Pfam	PF19263	NA	DUF5906
UHGV-0124782_36	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0124782_36	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0124782_36	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0124782_36	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0124782_37	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0124782_37	UniRef90	UniRef90_A0A374ND86	NA	NA
UHGV-0124782_37	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0124782_37	Pfam	PF05037	NA	DUF669
UHGV-0124782_37	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0124782_38	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0124782_38	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-0124782_38	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0124782_38	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0124782_38	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0124782_39	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0124782_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0124782_39	UniRef90	UniRef90_A0A374N1T8	Helicase	NA
UHGV-0124782_39	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0124782_39	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0124782_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0124782_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0124782_39	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0124782_39	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0124782_40	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0124782_40	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-0124782_40	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0124782_40	Pfam	PF13479	AAA domain	AAA_24
UHGV-0124782_40	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0124782_41	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0124782_41	UniRef90	UniRef90_R6R2R3	Siphovirus Gp157	NA
UHGV-0124782_41	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0124782_41	Structural annotation	PF05565	NA	NA
UHGV-0124782_42	PHROG	phrog_15609	NA	unknown function
UHGV-0124782_42	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0124782_42	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0124782_42	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0124782_43	PHROG	phrog_8470	NA	unknown function
UHGV-0124782_43	UniRef90	UniRef90_UPI0018E45158	PcfJ domain-containing protein	NA
UHGV-0124782_43	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0124782_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0124782_43	Structural annotation	PF14284	NA	NA
UHGV-0124782_44	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0124782_46	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0124782_46	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0124782_48	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0124782_48	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0124782_48	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-0124782_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124782_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0124782_48	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0124782_49	UniRef90	UniRef90_A0A2N0ULS1	YozE_SAM_like domain-containing protein	NA
UHGV-0124782_49	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0124782_51	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0124782_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0124782_56	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0124782_56	UniRef90	UniRef90_A0A373KVP1	XRE family transcriptional regulator	NA
UHGV-0124782_56	eggNOG-mapper	908340.HMPREF9406_2608	Helix-turn-helix XRE-family like proteins	NA
UHGV-0124782_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0124782_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124782_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0124782_56	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0124782_57	PHROG	phrog_16442	NA	unknown function
UHGV-0124782_57	UniRef90	UniRef90_A0A373KW38	Nucleotide-binding protein	NA
UHGV-0124782_57	eggNOG-mapper	397291.C804_06293	Predicted nucleotide-binding protein containing TIR-like domain	NA
UHGV-0124782_57	PADLOC	Effector_00069	TIR	CBASS
UHGV-0124782_57	Pfam	PF10137	CAP12/Pycsar effector protein, TIR domain	CAP12-PCTIR_TIR
UHGV-0124782_57	COG	COG4271	Predicted nucleotide-binding protein containing TIR -like domain	NA
UHGV-0124782_57	Structural annotation	PF10137, COG4271	NA	NA
UHGV-0124782_58	Structural annotation	PF20505, MF_00194, NF001462, COG2974	NA	NA
UHGV-0124782_59	Structural annotation	PF15968	NA	NA
UHGV-0124782_60	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0124782_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0124782_60	UniRef90	UniRef90_A0A374NFM5	XRE family transcriptional regulator	NA
UHGV-0124782_60	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0124782_60	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0124782_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0124782_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0124782_61	KOfam	K14059	int; integrase	NA
UHGV-0124782_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0124782_61	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-0124782_61	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-0124782_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0124782_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0124782_61	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA